RLG00000023895

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017332
Physical Location & Seq
Forward (+)
29630382 .. 29631369
988 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023895

Sequence Viewer

Length: 402 bp
ATGGGACGGTTGGAGAATGTGACCTACGCTCCTGCACAAATGAAAAACATAGAATTTAAAATATCTAGGCTGAAAGTGAGGTGCAGAAGAGACTCTGTTTCCCCTTTTGTTTTGGTCGTGTTTAGTGTTTGCTTGTTAACTCGCGAGCTACAAGACCCTGACCATCTGAAAAGCAATGGAGTGGGGGAGGTGATTGACTTGGGCAAGATTGCTAGCTATTTTGTCATCAATGTAGAGAAAGGAGACTGCTTAGATCTCCTTCTCTGGGAGTCTACTGCAAATTTGTGTTCCCAGGACCTTGCTGTCTTATGCTTGCTGATCTGCATGATGGATTACGAGGAAAGTCCTGGGAATGGAATTCTAAGCAAGGAGAATTATTTTACTGATTATTCCCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

4.82

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19471
rosa_laevigata RLG00000023894 RLG00000023895
rosa_multiflora Rmu_sc0004848.1_g000006
rosa_roxburghii Rroxscaffold_6G00406840
rosa_rugosa Rorug03G0144000
rosa_samantha Rh3AG193700 Rh3AG193800 Rh3BG223500 Rh3BG223600 Rh3CG218400 Rh3CG218500 Rh3DG219500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 272
AccII CGCG 1 cut(s) 144
AcsI RAATTY 3 cut(s) 53, 280, 357
AfiI CCNNNNNNNGG 2 cut(s) 265, 353
AjnI CCWGG 2 cut(s) 291, 346
AluBI AGCT 2 cut(s) 148, 216
AluI AGCT 2 cut(s) 148, 216
Alw26I GTCTC 2 cut(s) 84, 237
ApoI RAATTY 3 cut(s) 53, 280, 357
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 212
AvaII GGWCC 1 cut(s) 295
BccI CCATC 2 cut(s) 171, 322
BciT130I CCWGG 2 cut(s) 293, 348
BcoDI GTCTC 2 cut(s) 84, 237
BfaI CTAG 2 cut(s) 66, 213
BglII AGATCT 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 293, 348
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 2 cut(s) 293, 348
BmtI GCTAGC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 291, 347
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 353
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 2 cut(s) 293, 348
BseDI CCNNGG 2 cut(s) 291, 347
BseLI CCNNNNNNNGG 2 cut(s) 265, 353
BseMI GCAATG 1 cut(s) 181
BsgI GTGCAG 2 cut(s) 18, 103
Bsh1236I CGCG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 265, 353
BsmAI GTCTC 2 cut(s) 84, 237
BsmFI GGGAC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 253, 318
Bsp68I TCGCGA 1 cut(s) 144
BspFNI CGCG 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 291, 347
BssMI GATC 2 cut(s) 253, 318
Bst2UI CCWGG 2 cut(s) 293, 348
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 3 cut(s) 146, 214, 314
BstDEI CTNAG 2 cut(s) 250, 362
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 2 cut(s) 256, 321
BstMAI GTCTC 2 cut(s) 84, 237
BstMBI GATC 2 cut(s) 253, 318
BstNI CCWGG 2 cut(s) 293, 348
BstSCI CCNGG 2 cut(s) 291, 346
BstUI CGCG 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 146, 214, 314
Cfr13I GGNCC 1 cut(s) 295
CviAII CATG 1 cut(s) 325
CviJI RGCY 3 cut(s) 70, 148, 216
CviKI_1 RGCY 3 cut(s) 70, 148, 216
DdeI CTNAG 2 cut(s) 250, 362
DpnI GATC 2 cut(s) 255, 320
DpnII GATC 2 cut(s) 253, 318
DraI TTTAAA 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 291, 346
FaeI CATG 1 cut(s) 328
FaiI YATR 4 cut(s) 50, 310, 326, 400
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 272
FspBI CTAG 2 cut(s) 66, 213
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 2 cut(s) 92, 269
HpaI GTTAAC 1 cut(s) 138
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 138, 273
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 138, 273
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 35, 84, 278, 324
HpyF3I CTNAG 2 cut(s) 250, 362
Hsp92II CATG 1 cut(s) 328
KspAI GTTAAC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 253, 318
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 45, 171, 250, 278, 305, 333, 360
MaeI CTAG 2 cut(s) 66, 213
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 255, 320
MboI GATC 2 cut(s) 253, 318
MboII GAAGA 1 cut(s) 99
MflI RGATCY 1 cut(s) 253
MluCI AATT 4 cut(s) 53, 280, 357, 373
MlyI GAGTC 2 cut(s) 86, 278
MnlI CCTC 3 cut(s) 72, 181, 331
MseI TTAA 2 cut(s) 57, 137
MspR9I CCNGG 2 cut(s) 293, 348
MvaI CCWGG 2 cut(s) 293, 348
MvnI CGCG 1 cut(s) 144
NdeII GATC 2 cut(s) 253, 318
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 19
NruI TCGCGA 1 cut(s) 144
PleI GAGTC 2 cut(s) 86, 277
PpsI GAGTC 2 cut(s) 86, 277
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 291, 346
PspGI CCWGG 2 cut(s) 291, 346
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PsuI RGATCY 1 cut(s) 253
RruI TCGCGA 1 cut(s) 144
SaqAI TTAA 2 cut(s) 57, 137
Sau3AI GATC 2 cut(s) 253, 318
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 2 cut(s) 86, 278
ScrFI CCNGG 2 cut(s) 293, 348
SetI ASST 6 cut(s) 26, 83, 150, 192, 218, 300
SinI GGWCC 1 cut(s) 295
Sse9I AATT 4 cut(s) 53, 280, 357, 373
SspMI CTAG 2 cut(s) 66, 213
StyD4I CCNGG 2 cut(s) 291, 346
TaaI ACNGT 1 cut(s) 9
TasI AATT 4 cut(s) 53, 280, 357, 373
Tru1I TTAA 2 cut(s) 57, 137
Tru9I TTAA 2 cut(s) 57, 137
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 3 cut(s) 53, 280, 357
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 2 cut(s) 66, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.