FvH4_6g20330

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
13916591 .. 13919478
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20330.t1

Sequence Viewer

Length: 1488 bp
ATGGAGATCATCAATGATCAGTTAGCCAGAGGTGAACATCCGAAGGCCGGAGTTTTTGAACGTGCTTGGTCTTGGGTTAAGGCCTTGCCGGGAAACTTCAAAAACAAGGTTACCAAAGTTGCAAAGAACACTATCAAGCTAGGAAAAGATGACCCGAGAAGAGTCATTCACTCTCTGAAAGTGGCTATGGCTCTCACATTGGTGTCCTTATTGTATTATTGGAGAGCCCTTTATGATGGTCTTGGGGTTGCAGGAATGTGGGCGGTTCTAACAGTGGTAGTAGTGTTTGAATTCACTGTAGGTGCAACACTCAGCAAGGGTTTAAACAGAAGCTTTGCAACATTACTTGCCGGTGCTCTAGGAATTGGAGCAAATCATTTGGCTAGTCTCTTCGGAGAGCAAGGAGAACCCATTATCCTAGGTGTCCTTGTCTTTCTACTAGCTGCAGCATCTACATTTTCAAGGTTTTTCCCAAGGATCAAAGAGAGATATGATTATGGGGTGTTGATATTCATACTGACATTTAGTATGGTAACTGTATCGGGCTATCGGGTTGAGGGGCTCTTGCAGATGGCCTATCAAAGACTAATTACAATTTTAATAGGTGGAGGAACCTGCATAATCTTATCAATTTTCTTATGTCCAGTATGGGCTGGTGAAGATTTGCATAGTCTTATAGCATCCAACATAGACAAGATTGCTAACTACCTTGAAGGAATTGGAGGAGGTGAATATTTTCAACTTCCCAAGGATGGAAAGTCTACCAAGGTCACACAAAACAATGGATATAAAAGTGTCCTCAACTCAAAAAACACTGAAGAATCCTGGGCAAACTTTGCAAGATGGGAACCAGGACACGGACGCTTCAAATTTCGTCATCCATGGAAGCAATATTTGAAGACAGGAGCCCTTGTCAGGCAATGTGCTTATCAGATTGAAACTCTAAATAGCCACATCAACTCAGATGTACAGGTGCCACAAGAATTTTTACAAATAATCCAAGCCTCATGCATAACAATGAGTACTGAGTCTGGCAAAGCACTAAAAGCTTTAGGCACAGCAATAAAAACCATGAAGGACCCAAAATCTGCCTGTCAACATTTGGAGAATTCCAAAAATGCAGTAGAAGAACTTCACATTGCACTGAAAGCAGCATCACTGGAAGATGCCGACATCCTTGCAATCATACCTGCAGCCACAATTGCTTCAATACTAGTTGAGATTGTCACATGTGTGGAGAAAATTTCCATGTCAGTTTACGAGCTTTCCCAATTAGCAGATTTCAAGGTGGTGGAAGCAACTGTTTCGCCAGAGATTAAGCCACAATTACTGCACAAAGGAAGCATAAACCCTATACTTCTGGATGATGGTGATTATAATCCCCATGTTGTGATTAGAGTAGATGAAATAGATATGGGTTCTCATCAAGAAGATGACAAAATTTCTCGTCAGACACCGAAAGGTCCAAAACAAATCGAAGAAGTGTAA

Protein Analysis

496

Amino Acids

54.54

Weight (kDa)

7.64

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 46 - 386 6.7e-147 Aluminium activated malate transporter
FUSC_2 PF13515 84 - 207 5.8e-09 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11680 AT3G11680
fragaria_vesca FvH4_6g20330
malus_domestica MD12G1040500.v1.1 MD14G1039500.v1.1
prunus_persica Prupe.7G094400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475951
rosa_laevigata RLG00000023797
rosa_multiflora Rmu_sc0000581.1_g000005
rosa_roxburghii Rroxscaffold_6G00405680
rosa_rugosa Rorug03G0152300
rosa_samantha Rh3AG203100 Rh3BG232900 Rh3CG228400 Rh3DG228600
rosa_wichuraiana Rw3G018470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1377
Acc36I ACCTGC 2 cut(s) 623, 1198
AccB1I GGYRCC 1 cut(s) 973
AccI GTMKAC 1 cut(s) 761
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 6 cut(s) 290, 869, 983, 1108, 1242, 1440
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 2 cut(s) 969, 1024
AfiI CCNNNNNNNGG 4 cut(s) 47, 752, 857, 915
AflIII ACRYGT 1 cut(s) 1229
AhlI ACTAGT 1 cut(s) 1213
AjnI CCWGG 2 cut(s) 824, 850
AleI CACNNNNGTG 2 cut(s) 200, 1232
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 5 cut(s) 139, 333, 443, 1049, 1264
AluI AGCT 5 cut(s) 139, 333, 443, 1049, 1264
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 3 cut(s) 45, 81, 573
ApeKI GCWGC 4 cut(s) 443, 446, 1151, 1193
ApoI RAATTY 6 cut(s) 290, 869, 983, 1108, 1242, 1440
Asp700I GAANNNNTTC 2 cut(s) 735, 1131
AspA2I CCTAGG 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 1078, 1463
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 4 cut(s) 44, 668, 740, 1382
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 1078, 1463
AvrII CCTAGG 1 cut(s) 418
BanI GGYRCC 1 cut(s) 973
BanII GRGCYC 3 cut(s) 229, 564, 910
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 4 cut(s) 430, 458, 1163, 1205
BccI CCATC 5 cut(s) 230, 565, 746, 837, 1361
BcgI CGANNNNNNTGC 4 cut(s) 1160, 1194, 1287, 1321
BciT130I CCWGG 2 cut(s) 826, 852
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 1213
BfaI CTAG 6 cut(s) 140, 359, 384, 419, 440, 1214
BfmI CTRYAG 3 cut(s) 297, 444, 1191
BfuAI ACCTGC 2 cut(s) 623, 1198
BisI GCNGC 4 cut(s) 444, 447, 1152, 1194
BlnI CCTAGG 1 cut(s) 418
BlsI GCNGC 4 cut(s) 445, 448, 1153, 1195
BmcAI AGTACT 1 cut(s) 1024
Bme1390I CCNGG 3 cut(s) 90, 826, 852
Bme18I GGWCC 2 cut(s) 1078, 1463
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 1078, 1463
BmiI GGNNCC 5 cut(s) 613, 849, 907, 975, 1080
BmrFI CCNGG 3 cut(s) 90, 826, 852
BmsI GCATC 4 cut(s) 458, 689, 1156, 1163
BpiI GAAGAC 1 cut(s) 905
BpuMI CCSGG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 1377
BsaJI CCNNGG 6 cut(s) 418, 473, 747, 765, 825, 881
BsaXI ACNNNNNCTCC 2 cut(s) 897, 927
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 752, 857, 915
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 644, 1164
Bse3DI GCAATG 2 cut(s) 926, 1137
Bse8I GATNNNNATC 1 cut(s) 1377
BseBI CCWGG 2 cut(s) 826, 852
BseDI CCNNGG 6 cut(s) 418, 473, 747, 765, 825, 881
BseGI GGATG 6 cut(s) 37, 680, 757, 877, 1173, 1369
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 4 cut(s) 47, 752, 857, 915
BseMI GCAATG 2 cut(s) 926, 1137
BseMII CTCAG 3 cut(s) 325, 975, 1017
BseNI ACTGG 2 cut(s) 644, 1164
BseRI GAGGAG 1 cut(s) 738
BseXI GCAGC 4 cut(s) 430, 458, 1163, 1205
BsgI GTGCAG 1 cut(s) 1316
BshFI GGCC 3 cut(s) 47, 83, 575
BshNI GGYRCC 1 cut(s) 973
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 3 cut(s) 48, 89, 351
BslI CCNNNNNNNGG 4 cut(s) 47, 752, 857, 915
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 3 cut(s) 47, 83, 575
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 4 cut(s) 229, 358, 564, 910
Bsp1407I TGTACA 1 cut(s) 967
Bsp143I GATC 3 cut(s) 6, 16, 477
Bsp19I CCATGG 1 cut(s) 881
BspACI CCGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 47, 83, 575
BspCNI CTCAG 3 cut(s) 324, 974, 1018
BspLI GGNNCC 5 cut(s) 613, 849, 907, 975, 1080
BspMAI CTGCAG 2 cut(s) 448, 1195
BspMI ACCTGC 2 cut(s) 623, 1198
BspPI GGATC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 973
BsrDI GCAATG 2 cut(s) 926, 1137
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 967
BsrI ACTGG 2 cut(s) 644, 1164
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 6 cut(s) 418, 473, 747, 765, 825, 881
BssMI GATC 3 cut(s) 6, 16, 477
BssT1I CCWWGG 5 cut(s) 418, 473, 747, 765, 881
Bst2UI CCWGG 2 cut(s) 826, 852
Bst4CI ACNGT 4 cut(s) 274, 298, 538, 1303
Bst6I CTCTTC 2 cut(s) 154, 395
BstAPI GCANNNNNTGC 1 cut(s) 836
BstAUI TGTACA 1 cut(s) 967
BstDEI CTNAG 3 cut(s) 311, 961, 1026
BstDSI CCRYGG 1 cut(s) 881
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 6 cut(s) 37, 680, 757, 877, 1173, 1369
BstKTI GATC 3 cut(s) 9, 19, 480
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 6, 16, 477
BstMWI GCNNNNNNNGC 4 cut(s) 836, 1046, 1148, 1202
BstNI CCWGG 2 cut(s) 826, 852
BstNSI RCATGY 1 cut(s) 1233
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 3 cut(s) 88, 824, 850
BstSFI CTRYAG 3 cut(s) 297, 444, 1191
BstV1I GCAGC 4 cut(s) 430, 458, 1163, 1205
BstV2I GAAGAC 1 cut(s) 905
BsuRI GGCC 3 cut(s) 47, 83, 575
BtgI CCRYGG 1 cut(s) 881
BtsCI GGATG 6 cut(s) 37, 680, 757, 877, 1173, 1369
BtsIMutI CAGTG 5 cut(s) 279, 294, 813, 1142, 1157
BveI ACCTGC 2 cut(s) 623, 1198
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 1078, 1463
CseI GACGC 1 cut(s) 870
Csp6I GTAC 2 cut(s) 968, 1023
CviAII CATG 6 cut(s) 882, 1008, 1072, 1230, 1249, 1385
CviQI GTAC 2 cut(s) 968, 1023
DdeI CTNAG 3 cut(s) 311, 961, 1026
DpnI GATC 3 cut(s) 8, 18, 479
DpnII GATC 3 cut(s) 6, 16, 477
DraI TTTAAA 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 154, 395
EarI CTCTTC 2 cut(s) 154, 395
Eco130I CCWWGG 5 cut(s) 418, 473, 747, 765, 881
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 3 cut(s) 229, 564, 910
Eco47I GGWCC 2 cut(s) 1078, 1463
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 1078
EcoO65I GGTNACC 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 290, 1108
EcoRII CCWGG 2 cut(s) 824, 850
EcoT14I CCWWGG 5 cut(s) 418, 473, 747, 765, 881
EcoT22I ATGCAT 1 cut(s) 1013
EcoT38I GRGCYC 3 cut(s) 229, 564, 910
ErhI CCWWGG 5 cut(s) 418, 473, 747, 765, 881
FaeI CATG 6 cut(s) 885, 1011, 1075, 1233, 1252, 1388
FatI CATG 6 cut(s) 881, 1007, 1071, 1229, 1248, 1384
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 761
Fnu4HI GCNGC 4 cut(s) 444, 447, 1152, 1194
FokI GGATG 6 cut(s) 24, 667, 764, 864, 1160, 1376
FriOI GRGCYC 3 cut(s) 229, 564, 910
Fsp4HI GCNGC 4 cut(s) 444, 447, 1152, 1194
FspBI CTAG 6 cut(s) 140, 359, 384, 419, 440, 1214
GluI GCNGC 4 cut(s) 444, 447, 1152, 1194
HaeIII GGCC 3 cut(s) 47, 83, 575
HapII CCGG 3 cut(s) 48, 89, 351
HgaI GACGC 1 cut(s) 870
Hin1II CATG 6 cut(s) 885, 1011, 1075, 1233, 1252, 1388
HincII GTYRAC 1 cut(s) 1097
HindII GTYRAC 1 cut(s) 1097
HindIII AAGCTT 2 cut(s) 331, 1047
HinfI GANTC 3 cut(s) 162, 821, 1028
HpaII CCGG 3 cut(s) 48, 89, 351
HphI GGTGA 4 cut(s) 44, 668, 740, 1382
Hpy166II GTNNAC 4 cut(s) 35, 762, 1097, 1258
Hpy188I TCNGA 6 cut(s) 42, 177, 395, 933, 964, 1452
Hpy188III TCNNGA 2 cut(s) 1361, 1427
Hpy8I GTNNAC 4 cut(s) 35, 762, 1097, 1258
HpyAV CCTTC 3 cut(s) 37, 707, 1069
HpyCH4III ACNGT 4 cut(s) 274, 298, 538, 1303
HpyCH4IV ACGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 4 cut(s) 836, 1046, 1148, 1202
HpyF3I CTNAG 3 cut(s) 311, 961, 1026
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 6 cut(s) 885, 1011, 1075, 1233, 1252, 1388
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 6, 16, 477
LmnI GCTCC 2 cut(s) 368, 905
Lsp1109I GCAGC 4 cut(s) 430, 458, 1163, 1205
LweI GCATC 4 cut(s) 458, 689, 1156, 1163
MaeI CTAG 6 cut(s) 140, 359, 384, 419, 440, 1214
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 4 cut(s) 109, 532, 769, 1225
MalI GATC 3 cut(s) 8, 18, 479
MboI GATC 3 cut(s) 6, 16, 477
MboII GAAGA 8 cut(s) 171, 382, 671, 830, 910, 1139, 1175, 1442
MfeI CAATTG 1 cut(s) 1200
MhlI GDGCHC 4 cut(s) 229, 358, 564, 910
MlyI GAGTC 2 cut(s) 171, 1037
MmeI TCCRAC 1 cut(s) 708
MnlI CCTC 7 cut(s) 23, 550, 602, 716, 719, 809, 1015
Mph1103I ATGCAT 1 cut(s) 1013
MroXI GAANNNNTTC 2 cut(s) 735, 1131
MseI TTAA 4 cut(s) 78, 323, 599, 1317
MslI CAYNNNNRTG 3 cut(s) 200, 1016, 1232
MspI CCGG 3 cut(s) 48, 89, 351
MspR9I CCNGG 3 cut(s) 90, 826, 852
MssI GTTTAAAC 1 cut(s) 324
MunI CAATTG 1 cut(s) 1200
MvaI CCWGG 2 cut(s) 826, 852
MwoI GCNNNNNNNGC 4 cut(s) 836, 1046, 1148, 1202
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 881
NdeII GATC 3 cut(s) 6, 16, 477
NlaIII CATG 6 cut(s) 885, 1011, 1075, 1233, 1252, 1388
NlaIV GGNNCC 5 cut(s) 613, 849, 907, 975, 1080
NmuCI GTSAC 2 cut(s) 769, 1225
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 1 cut(s) 1233
OliI CACNNNNGTG 2 cut(s) 200, 1232
PceI AGGCCT 1 cut(s) 83
PciI ACATGT 1 cut(s) 1229
PdmI GAANNNNTTC 2 cut(s) 735, 1131
PfeI GAWTC 1 cut(s) 821
PkrI GCNGC 4 cut(s) 445, 448, 1153, 1195
PleI GAGTC 2 cut(s) 170, 1036
PmeI GTTTAAAC 1 cut(s) 324
PpsI GAGTC 2 cut(s) 170, 1036
PpuMI RGGWCCY 1 cut(s) 1078
PscI ACATGT 1 cut(s) 1229
PsiI TTATAA 1 cut(s) 1377
Psp5II RGGWCCY 1 cut(s) 1078
Psp6I CCWGG 2 cut(s) 824, 850
PspEI GGTNACC 1 cut(s) 109
PspGI CCWGG 2 cut(s) 824, 850
PspN4I GGNNCC 5 cut(s) 613, 849, 907, 975, 1080
PspPI GGNCC 2 cut(s) 1078, 1463
PspPPI RGGWCCY 1 cut(s) 1078
PstI CTGCAG 2 cut(s) 448, 1195
RsaI GTAC 2 cut(s) 969, 1024
RsaNI GTAC 2 cut(s) 968, 1023
RseI CAYNNNNRTG 3 cut(s) 200, 1016, 1232
SaqAI TTAA 4 cut(s) 78, 323, 599, 1317
SatI GCNGC 4 cut(s) 444, 447, 1152, 1194
Sau3AI GATC 3 cut(s) 6, 16, 477
Sau96I GGNCC 2 cut(s) 1078, 1463
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 2 cut(s) 171, 1037
ScrFI CCNGG 3 cut(s) 90, 826, 852
SduI GDGCHC 4 cut(s) 229, 358, 564, 910
SfaNI GCATC 4 cut(s) 458, 689, 1156, 1163
SfcI CTRYAG 3 cut(s) 297, 444, 1191
SinI GGWCC 2 cut(s) 1078, 1463
SmiMI CAYNNNNRTG 3 cut(s) 200, 1016, 1232
SpeI ACTAGT 1 cut(s) 1213
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 263
SspI AATATT 2 cut(s) 734, 893
SspMI CTAG 6 cut(s) 140, 359, 384, 419, 440, 1214
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 88, 824, 850
StyI CCWWGG 5 cut(s) 418, 473, 747, 765, 881
TaaI ACNGT 4 cut(s) 274, 298, 538, 1303
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 1476
TatI WGTACW 2 cut(s) 967, 1022
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 4 cut(s) 78, 323, 599, 1317
Tru9I TTAA 4 cut(s) 78, 323, 599, 1317
TscAI CASTG 5 cut(s) 279, 301, 820, 1149, 1164
TseFI GTSAC 2 cut(s) 769, 1225
TseI GCWGC 4 cut(s) 443, 446, 1151, 1193
Tsp45I GTSAC 2 cut(s) 769, 1225
TspDTI ATGAA 3 cut(s) 502, 1088, 1419
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 5 cut(s) 279, 301, 820, 1149, 1164
VpaK11BI GGWCC 2 cut(s) 1078, 1463
XapI RAATTY 6 cut(s) 290, 869, 983, 1108, 1242, 1440
XceI RCATGY 1 cut(s) 1233
XmaJI CCTAGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 761
XmnI GAANNNNTTC 2 cut(s) 735, 1131
XspI CTAG 6 cut(s) 140, 359, 384, 419, 440, 1214
ZrmI AGTACT 1 cut(s) 1024
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.