MD12G1040500.v1.1

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
4405915 .. 4408221
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1040500.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGGAGATCACCGAGTTAGCAACTGCAGGGGAAGAGAAGGTTGGAGCTTTCACGCGGTTGTGTGGATGGCTCAAGGCCTTGCTAGTGAAGTTGAGTACCAAGGTTGTCAAAGTTATAAAGAGCATTATAAAGCTAGGACAAGATGACCCAAGGAGAGTAACTCACTCTCTAAAAGTGGCTTTGGCTCTTACATTGGTGTCCATATTGTACTATTGGCAAGCCCTTTTCGATGGTATTGGTGTTGCAGGAATCTGGGCGGTGCTAACCGTGGTAGTAGTGTTTGAATTCACTGTAGGTGCAACCCTCAGCAAAGGTTTAAATAGAGGTTTTGCAACATTCTTGGCTGGTGCTCTTGGCCTTGGAGCTAACCACATAGCTAGTCTCTTTGGAGTGAAAGGAGAACCCATTGTGCTTGGGATCTTTGTCTTCCTACTAGCTACAGCATCTACATTCTCACGGTTCTTCCCACGGATCAAGGCGAGATATGACTATGGGGTGTTGATATTCATACTGACATTTAGCATGGTAACCGTCTCGGGGTATCGTGTTCAAGGGATCTTGGAGATGGCACATGAGAGACTCTTAACAATTGGAATAGGTGGAGGAACCTGCATGATCATTTCAGGTTTTGTCTGTCCAGTATGGGCTGGTGAAGATCTGCAGAAGCTGATAGCTTCCAATATAGAAAAGCTTGCAAACTACTTAGAAGATTTTGGGGGTGAATATTTTCCATTACCTAAGAATGGAAAGTCTGGCATGGTCTCCAAAAATAAGGAATCATTTCTTCAAGGATATAAGAGTGTCCTCAACTCAAAAAGCAGTGAAGAATCCTTGGTAAATTTTGCAAGATGGGAGCCAGGACATGGTAGTTTTAAATTTCGCCATCCATGGAAGCAGTACTTGAAGATCGGTGCCCTTGCCAGGCAATGTGCCTACCAGATTGAAACTCTAAATGGTCACATCAACTCAGATGTACAAGTACCACCAGAATTTTTACAGATAATTCAAGACTCATGTAGAACAATGAGTATTGAACCTGGAAAAGCCCTAAAAGCGTTAGCCATAGCAATCAAAACCATGAAAGAACCAAAAGATGCTTGTGAACATTTGGAGAACTCCAAAACTGCAGTCGAAGACCTCAAAATTGCACTCAAAGCTGCATCACTAGAAACTGCTGACATACTTGCAATTGTACCAGCTGCAACAGTTGCTTCAATACTAGTTGAGATTGTCAAAGGGGTAGAAAACATTTCTAAGTCAGTTCATGAGCTTTCTGAACTGGCACACTTCAAAAAAGCTGTGGAGCCCACTGTATCGCCAGAGAAGCCACCATTGCTGCACAGGGGAAGCGTTAATCCTGTACTTTTGGATGGTGAAGATGCCCACGTTATAATCACCGTAGGTGAAACAAACATTGGTTTCCAAGAAAATGAGGTTAATCCTCAGGCACCAAAATGCCCAAAACCAAGGGAGGAAATGTAA

Protein Analysis

494

Amino Acids

53.72

Weight (kDa)

8.3

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 44 - 388 1.3e-148 Aluminium activated malate transporter
FUSC_2 PF13515 82 - 205 2.2e-07 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11680 AT3G11680
fragaria_vesca FvH4_6g20330
malus_domestica MD12G1040500.v1.1 MD14G1039500.v1.1
prunus_persica Prupe.7G094400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475951
rosa_laevigata RLG00000023797
rosa_multiflora Rmu_sc0000581.1_g000005
rosa_roxburghii Rroxscaffold_6G00405680
rosa_rugosa Rorug03G0152300
rosa_samantha Rh3AG203100 Rh3BG232900 Rh3CG228400 Rh3DG228600
rosa_wichuraiana Rw3G018470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 116, 128, 1391
Acc36I ACCTGC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 911, 1447
AccB7I CCANNNNNTGG 1 cut(s) 863
AccII CGCG 1 cut(s) 55
AciI CCGC 2 cut(s) 55, 257
AclWI GGATC 3 cut(s) 425, 479, 563
AcsI RAATTY 4 cut(s) 284, 838, 875, 989
AfaI GTAC 7 cut(s) 97, 209, 899, 975, 981, 1194, 1362
AfiI CCNNNNNNNGG 4 cut(s) 537, 743, 863, 921
AgsI TTSAA 9 cut(s) 284, 551, 788, 904, 944, 1007, 1034, 1215, 1291
AhlI ACTAGT 1 cut(s) 1219
AjnI CCWGG 3 cut(s) 856, 920, 1036
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 1398, 1430
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 4 cut(s) 386, 538, 571, 766
AlwI GGATC 3 cut(s) 425, 479, 563
AlwNI CAGNNNCTG 1 cut(s) 667
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 2 cut(s) 75, 355
ApeKI GCWGC 3 cut(s) 1157, 1199, 1336
ApoI RAATTY 4 cut(s) 284, 838, 875, 989
ArsI GACNNNNNNTTYG 2 cut(s) 1113, 1145
Asp700I GAANNNNTTC 2 cut(s) 726, 780
AsuHPI GGTGA 5 cut(s) 662, 731, 1385, 1387, 1415
AvaI CYCGRG 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 1443
BaeGI GKGCMC 1 cut(s) 916
BanI GGYRCC 2 cut(s) 911, 1447
BanII GRGCYC 1 cut(s) 1308
BbsI GAAGAC 2 cut(s) 418, 1140
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 1144, 1186, 1323
BccI CCATC 6 cut(s) 60, 224, 559, 843, 891, 1364
BciT130I CCWGG 3 cut(s) 858, 922, 1038
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 4 cut(s) 386, 538, 571, 766
BcuI ACTAGT 1 cut(s) 1219
BfaI CTAG 6 cut(s) 83, 134, 378, 434, 1166, 1220
BfmI CTRYAG 5 cut(s) 24, 291, 438, 659, 1125
BfuAI ACCTGC 1 cut(s) 617
BglII AGATCT 1 cut(s) 655
BisI GCNGC 3 cut(s) 1158, 1200, 1337
BlsI GCNGC 3 cut(s) 1159, 1201, 1338
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 3 cut(s) 858, 922, 1038
BmeT110I CYCGRG 1 cut(s) 535
BmiI GGNNCC 5 cut(s) 607, 855, 913, 1305, 1449
BmrFI CCNGG 3 cut(s) 858, 922, 1038
BmsI GCATC 4 cut(s) 452, 1084, 1169, 1369
BpiI GAAGAC 2 cut(s) 418, 1140
BplI GAGNNNNNCTC 2 cut(s) 145, 177
Bpu10I CCTNAGC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 8 cut(s) 99, 149, 267, 358, 467, 831, 887, 1466
BsaXI ACNNNNNCTCC 1 cut(s) 1463
Bsc4I CCNNNNNNNGG 4 cut(s) 537, 743, 863, 921
Bse1I ACTGG 2 cut(s) 638, 1284
Bse21I CCTNAGG 1 cut(s) 1443
Bse3DI GCAATG 2 cut(s) 932, 1331
BseBI CCWGG 3 cut(s) 858, 922, 1038
BseDI CCNNGG 8 cut(s) 99, 149, 267, 358, 467, 831, 887, 1466
BseGI GGATG 3 cut(s) 71, 883, 1375
BseLI CCNNNNNNNGG 4 cut(s) 537, 743, 863, 921
BseMI GCAATG 2 cut(s) 932, 1331
BseMII CTCAG 3 cut(s) 319, 981, 1457
BseNI ACTGG 2 cut(s) 638, 1284
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 3 cut(s) 1144, 1186, 1323
BsgI GTGCAG 1 cut(s) 1322
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 77, 357
BshNI GGYRCC 2 cut(s) 911, 1447
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 535
BslI CCNNNNNNNGG 4 cut(s) 537, 743, 863, 921
BsmAI GTCTC 4 cut(s) 386, 538, 571, 766
BsmBI CGTCTC 1 cut(s) 538
BsnI GGCC 2 cut(s) 77, 357
Bso31I GGTCTC 1 cut(s) 766
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 3 cut(s) 352, 916, 1308
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
Bsp19I CCATGG 1 cut(s) 887
BspACI CCGC 2 cut(s) 55, 257
BspANI GGCC 2 cut(s) 77, 357
BspCNI CTCAG 3 cut(s) 318, 980, 1456
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 5 cut(s) 607, 855, 913, 1305, 1449
BspMAI CTGCAG 3 cut(s) 28, 663, 1129
BspMI ACCTGC 1 cut(s) 617
BspPI GGATC 3 cut(s) 425, 479, 563
BspT107I GGYRCC 2 cut(s) 911, 1447
BspTNI GGTCTC 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 932, 1331
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 638, 1284
BssECI CCNNGG 8 cut(s) 99, 149, 267, 358, 467, 831, 887, 1466
BssMI GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
BssT1I CCWWGG 6 cut(s) 99, 149, 358, 831, 887, 1466
Bst2UI CCWGG 3 cut(s) 858, 922, 1038
Bst4CI ACNGT 7 cut(s) 268, 292, 459, 532, 1207, 1312, 1399
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstAUI TGTACA 1 cut(s) 973
BstC8I GCNNGC 2 cut(s) 219, 693
BstDEI CTNAG 6 cut(s) 305, 703, 738, 967, 1254, 1443
BstDSI CCRYGG 3 cut(s) 267, 467, 887
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 3 cut(s) 71, 883, 1375
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 7 cut(s) 9, 420, 474, 558, 618, 658, 909
BstMAI GTCTC 4 cut(s) 386, 538, 571, 766
BstMBI GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
BstMWI GCNNNNNNNGC 5 cut(s) 1052, 1154, 1208, 1324, 1333
BstNI CCWGG 3 cut(s) 858, 922, 1038
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 856, 920, 1036
BstSFI CTRYAG 5 cut(s) 24, 291, 438, 659, 1125
BstSLI GKGCMC 1 cut(s) 916
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 1144, 1186, 1323
BstV2I GAAGAC 2 cut(s) 418, 1140
BstX2I RGATCY 3 cut(s) 417, 555, 655
BstYI RGATCY 3 cut(s) 417, 555, 655
Bsu36I CCTNAGG 1 cut(s) 1443
BsuRI GGCC 2 cut(s) 77, 357
BtgI CCRYGG 3 cut(s) 267, 467, 887
BtsCI GGATG 3 cut(s) 71, 883, 1375
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 3 cut(s) 288, 826, 1308
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 2 cut(s) 219, 693
CaiI CAGNNNCTG 1 cut(s) 667
CciI TCATGA 1 cut(s) 1264
Csp6I GTAC 7 cut(s) 96, 208, 898, 974, 980, 1193, 1361
CviAII CATG 9 cut(s) 523, 572, 613, 757, 863, 888, 1014, 1078, 1265
CviQI GTAC 7 cut(s) 96, 208, 898, 974, 980, 1193, 1361
DdeI CTNAG 6 cut(s) 305, 703, 738, 967, 1254, 1443
DpnI GATC 7 cut(s) 8, 419, 473, 557, 617, 657, 908
DpnII GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
DraI TTTAAA 2 cut(s) 318, 874
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 6 cut(s) 99, 149, 358, 831, 887, 1466
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 1308
Eco31I GGTCTC 1 cut(s) 766
Eco81I CCTNAGG 1 cut(s) 1443
Eco88I CYCGRG 1 cut(s) 535
Eco91I GGTNACC 1 cut(s) 526
EcoO65I GGTNACC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 856, 920, 1036
EcoT14I CCWWGG 6 cut(s) 99, 149, 358, 831, 887, 1466
EcoT38I GRGCYC 1 cut(s) 1308
ErhI CCWWGG 6 cut(s) 99, 149, 358, 831, 887, 1466
Esp3I CGTCTC 1 cut(s) 538
FaeI CATG 9 cut(s) 526, 575, 616, 760, 866, 891, 1017, 1081, 1268
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FatI CATG 9 cut(s) 522, 571, 612, 756, 862, 887, 1013, 1077, 1264
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 1158, 1200, 1337
FokI GGATG 3 cut(s) 78, 870, 1382
FriOI GRGCYC 1 cut(s) 1308
Fsp4HI GCNGC 3 cut(s) 1158, 1200, 1337
FspBI CTAG 6 cut(s) 83, 134, 378, 434, 1166, 1220
GluI GCNGC 3 cut(s) 1158, 1200, 1337
HaeIII GGCC 2 cut(s) 77, 357
Hin1II CATG 9 cut(s) 526, 575, 616, 760, 866, 891, 1017, 1081, 1268
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 5 cut(s) 249, 579, 776, 827, 1010
HphI GGTGA 5 cut(s) 662, 731, 1385, 1387, 1415
Hpy166II GTNNAC 1 cut(s) 1103
Hpy188I TCNGA 2 cut(s) 970, 1276
Hpy188III TCNNGA 2 cut(s) 1007, 1265
Hpy8I GTNNAC 1 cut(s) 1103
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 7 cut(s) 268, 292, 459, 532, 1207, 1312, 1399
HpyCH4IV ACGT 1 cut(s) 1386
HpyF10VI GCNNNNNNNGC 5 cut(s) 1052, 1154, 1208, 1324, 1333
HpyF3I CTNAG 6 cut(s) 305, 703, 738, 967, 1254, 1443
HpySE526I ACGT 1 cut(s) 1386
Hsp92II CATG 9 cut(s) 526, 575, 616, 760, 866, 891, 1017, 1081, 1268
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
LmnI GCTCC 4 cut(s) 44, 362, 853, 1303
Lsp1109I GCAGC 3 cut(s) 1144, 1186, 1323
LweI GCATC 4 cut(s) 452, 1084, 1169, 1369
MaeI CTAG 6 cut(s) 83, 134, 378, 434, 1166, 1220
MaeII ACGT 1 cut(s) 1386
MaeIII GTNAC 3 cut(s) 157, 526, 956
MalI GATC 7 cut(s) 8, 419, 473, 557, 617, 657, 908
MboI GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
MfeI CAATTG 2 cut(s) 588, 1188
MflI RGATCY 3 cut(s) 417, 555, 655
MhlI GDGCHC 3 cut(s) 352, 916, 1308
MluCI AATT 8 cut(s) 284, 588, 838, 875, 989, 1002, 1143, 1188
MlyI GAGTC 2 cut(s) 573, 1004
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 8 cut(s) 314, 317, 596, 815, 1148, 1426, 1452, 1465
MroXI GAANNNNTTC 2 cut(s) 726, 780
MseI TTAA 5 cut(s) 317, 584, 873, 1353, 1437
MslI CAYNNNNRTG 1 cut(s) 1453
MspA1I CMGCKG 1 cut(s) 1199
MspR9I CCNGG 3 cut(s) 858, 922, 1038
MunI CAATTG 2 cut(s) 588, 1188
MvaI CCWGG 3 cut(s) 858, 922, 1038
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 5 cut(s) 1052, 1154, 1208, 1324, 1333
NcoI CCATGG 1 cut(s) 887
NdeII GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
NlaIII CATG 9 cut(s) 526, 575, 616, 760, 866, 891, 1017, 1081, 1268
NlaIV GGNNCC 5 cut(s) 607, 855, 913, 1305, 1449
NmuCI GTSAC 1 cut(s) 956
PagI TCATGA 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 77
PdmI GAANNNNTTC 2 cut(s) 726, 780
PfeI GAWTC 3 cut(s) 249, 776, 827
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 3 cut(s) 1159, 1201, 1338
PleI GAGTC 2 cut(s) 573, 1004
PpsI GAGTC 2 cut(s) 573, 1004
PsiI TTATAA 3 cut(s) 116, 128, 1391
Psp6I CCWGG 3 cut(s) 856, 920, 1036
PspEI GGTNACC 1 cut(s) 526
PspGI CCWGG 3 cut(s) 856, 920, 1036
PspN4I GGNNCC 5 cut(s) 607, 855, 913, 1305, 1449
PstI CTGCAG 3 cut(s) 28, 663, 1129
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 3 cut(s) 417, 555, 655
PvuII CAGCTG 1 cut(s) 1199
RsaI GTAC 7 cut(s) 97, 209, 899, 975, 981, 1194, 1362
RsaNI GTAC 7 cut(s) 96, 208, 898, 974, 980, 1193, 1361
RseI CAYNNNNRTG 1 cut(s) 1453
SaqAI TTAA 5 cut(s) 317, 584, 873, 1353, 1437
SatI GCNGC 3 cut(s) 1158, 1200, 1337
Sau3AI GATC 7 cut(s) 6, 417, 471, 555, 615, 655, 906
ScaI AGTACT 1 cut(s) 899
SchI GAGTC 2 cut(s) 573, 1004
ScrFI CCNGG 3 cut(s) 858, 922, 1038
SduI GDGCHC 3 cut(s) 352, 916, 1308
SfaNI GCATC 4 cut(s) 452, 1084, 1169, 1369
SfcI CTRYAG 5 cut(s) 24, 291, 438, 659, 1125
SmiMI CAYNNNNRTG 1 cut(s) 1453
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 1219
Sse9I AATT 8 cut(s) 284, 588, 838, 875, 989, 1002, 1143, 1188
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 2 cut(s) 55, 257
SspI AATATT 1 cut(s) 725
SspMI CTAG 6 cut(s) 83, 134, 378, 434, 1166, 1220
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 856, 920, 1036
StyI CCWWGG 6 cut(s) 99, 149, 358, 831, 887, 1466
TaaI ACNGT 7 cut(s) 268, 292, 459, 532, 1207, 1312, 1399
TaiI ACGT 1 cut(s) 1389
TaqI TCGA 2 cut(s) 228, 1131
TasI AATT 8 cut(s) 284, 588, 838, 875, 989, 1002, 1143, 1188
TatI WGTACW 4 cut(s) 207, 897, 973, 1360
TfiI GAWTC 3 cut(s) 249, 776, 827
Tru1I TTAA 5 cut(s) 317, 584, 873, 1353, 1437
Tru9I TTAA 5 cut(s) 317, 584, 873, 1353, 1437
TscAI CASTG 3 cut(s) 295, 826, 1315
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 3 cut(s) 1157, 1199, 1336
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 3 cut(s) 496, 1094, 1253
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 3 cut(s) 295, 826, 1315
Van91I CCANNNNNTGG 1 cut(s) 863
XapI RAATTY 4 cut(s) 284, 838, 875, 989
XmnI GAANNNNTTC 2 cut(s) 726, 780
XspI CTAG 6 cut(s) 83, 134, 378, 434, 1166, 1220
ZrmI AGTACT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.