Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003473

Physical Location & Seq

Genomic Coordinates Forward (+)

17864271 .. 17867549

Gene Structure 3279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23770.t34

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCTGGAGCTGCGCAGGAAGCTGGATATGATAGGGCACTAATAGCTCGATTGGCCCTAAAGCCTGGGAAGATTTCTTCACTTGCAAAATCTATGCGTCAGCTTGCGGACATGGACGAGCCCATTGGCCGTGTCTTGCAGAAAACAGAGGTTGCAGATGGACTTATCTTAGAGAAAGCGACTTGTCCCTTGGGTGTACTTCTGGTTGTTTTTGAGTCCCGAACTGATGCCCTTGTTCAGCTTGGGAGTACAGGCTACCTGGGATTGGATGACTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004350 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

94

Amino Acids

9.95

Weight (kDa)

4.95

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003473)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770
rosa_chinensis	RchiOBHm_Chr1g0368571
rosa_samantha	Rh3AG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
AciI	CCGC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	127
AfaI	GTAC	2 cut(s)	198, 250
AfiI	CCNNNNNNNGG	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	64, 258
AluBI	AGCT	5 cut(s)	11, 23, 47, 103, 241
AluI	AGCT	5 cut(s)	11, 23, 47, 103, 241
AoxI	GGCC	2 cut(s)	54, 127
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	123
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	66, 260
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	66, 260
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	66, 260
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	65, 189, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	66, 260
BseDI	CCNNGG	3 cut(s)	65, 189, 259
BseGI	GGATG	2 cut(s)	274, 282
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	56, 129
BslFI	GGGAC	2 cut(s)	171, 202
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	171, 202
BsnI	GGCC	2 cut(s)	56, 129
Bsp1286I	GDGCHC	2 cut(s)	40, 123
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	56, 129
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	65, 189, 259
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	66, 260
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	274, 282
BstHHI	GCGC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 44, 53
BstNI	CCWGG	2 cut(s)	66, 260
BstSCI	CCNGG	2 cut(s)	64, 258
BstSLI	GKGCMC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	56, 129
BtsCI	GGATG	2 cut(s)	274, 282
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	197, 249
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	2 cut(s)	197, 249
DdeI	CTNAG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	64, 258
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	30, 95, 113
FaqI	GGGAC	2 cut(s)	171, 202
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	12
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	56, 129
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	6, 219
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	86, 139, 155
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 44, 53
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	9 cut(s)	2, 9, 51, 78, 188, 237, 245, 259, 272
LweI	GCATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	69, 82
MhlI	GDGCHC	2 cut(s)	40, 123
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	142
MspR9I	CCNGG	2 cut(s)	66, 260
MvaI	CCWGG	2 cut(s)	66, 260
MwoI	GCNNNNNNNGC	3 cut(s)	20, 44, 53
NlaIII	CATG	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	64, 258
PspGI	CCWGG	2 cut(s)	64, 258
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	198, 250
RsaNI	GTAC	2 cut(s)	197, 249
SatI	GCNGC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	66, 260
SduI	GDGCHC	2 cut(s)	40, 123
SetI	ASST	7 cut(s)	13, 25, 49, 105, 153, 243, 261
SfaNI	GCATC	1 cut(s)	217
SsiI	CCGC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	64, 258
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	49
TatI	WGTACW	2 cut(s)	196, 248
TseI	GCWGC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.