Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003473

Physical Location & Seq

Genomic Coordinates Reverse (-)

58635494 .. 58637101

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAAATACAGGGGGCCCCTTTAGTTGAAAATGCAAGAGAGATGGCAGTTGCAGCTAAGGAAAGTTCTAGACGGCTTCAGGTTATGACTTCGGAAGAAAGGAAAAGAATTCTACTGGATATAGCTGATGCGCTTGAAGGAAATTCGCATATAATCCATGTAGAAAATGAAGCTGATGTATGTGCATCAGAACATGCTGGACATGAAAAATCCTTGATATCTCGGCTAGCTCTAAGCCCTGGGAAGATCACACGTCTTGCAAACGACATTCGTGTACTTGCAAACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACGCAGGTGAGGTGGGCTTGCAGATGGCCTCATCTTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGTTATATTTGAGTCTCATCCTGATGCACTAACACAGATAGCTACCTTGGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

7.02

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003473)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770 FvH4_6g23770
rosa_chinensis	RchiOBHm_Chr1g0368571
rosa_samantha	Rh3AG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	108, 142
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	29, 137, 312
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	5 cut(s)	56, 125, 173, 230, 428
AluI	AGCT	5 cut(s)	56, 125, 173, 230, 428
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	3 cut(s)	15, 301, 344
ApaI	GGGCCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	108, 142
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	15, 16
AsuHPI	GGTGA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	37, 336
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	69, 227
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	54, 304
BlsI	GCNGC	2 cut(s)	55, 305
Bme1390I	CCNGG	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	15, 16
BmiI	GGNNCC	3 cut(s)	16, 17, 18
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	3 cut(s)	118, 194, 400
BmtI	GCTAGC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	238, 239, 432
Bse1I	ACTGG	2 cut(s)	120, 379
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	238, 239, 432
BseGI	GGATG	1 cut(s)	403
BseNI	ACTGG	2 cut(s)	120, 379
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	3 cut(s)	17, 303, 346
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	17, 303, 346
Bsp120I	GGGCCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	246, 292
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	3 cut(s)	17, 303, 346
BspLI	GGNNCC	3 cut(s)	16, 17, 18
BspMI	ACCTGC	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	120, 379
BssECI	CCNNGG	3 cut(s)	238, 239, 432
BssMI	GATC	2 cut(s)	246, 292
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	228, 337
BstDEI	CTNAG	3 cut(s)	57, 233, 353
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	249, 295
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	246, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 434
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	17, 303, 346
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	228, 337
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	15, 16
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	5 cut(s)	158, 194, 203, 286, 367
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	3 cut(s)	57, 233, 353
DpnI	GATC	2 cut(s)	248, 294
DpnII	GATC	2 cut(s)	246, 292
EaeI	YGGCCR	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	15, 16
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	5 cut(s)	161, 197, 206, 289, 370
FatI	CATG	5 cut(s)	157, 193, 202, 285, 366
Fnu4HI	GCNGC	2 cut(s)	54, 304
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	54, 304
FspBI	CTAG	2 cut(s)	69, 227
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	54, 304
HaeIII	GGCC	3 cut(s)	17, 303, 346
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	161, 197, 206, 289, 370
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	275, 372
Hpy188I	TCNGA	3 cut(s)	94, 190, 443
Hpy188III	TCNNGA	3 cut(s)	69, 312, 407
Hpy8I	GTNNAC	2 cut(s)	275, 372
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	8 cut(s)	4, 35, 53, 185, 260, 281, 339, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 434
HpyF3I	CTNAG	3 cut(s)	57, 233, 353
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	161, 197, 206, 289, 370
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	246, 292
LpnPI	CCDG	8 cut(s)	65, 101, 183, 225, 252, 308, 360, 420
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	3 cut(s)	118, 194, 400
MaeI	CTAG	2 cut(s)	69, 227
MaeII	ACGT	1 cut(s)	253
MalI	GATC	2 cut(s)	248, 294
MboI	GATC	2 cut(s)	246, 292
MboII	GAAGA	3 cut(s)	107, 256, 302
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	3 cut(s)	108, 142, 297
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	2 cut(s)	321, 357
MslI	CAYNNNNRTG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	53, 434
NdeII	GATC	2 cut(s)	246, 292
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	161, 197, 206, 289, 370
NlaIV	GGNNCC	3 cut(s)	16, 17, 18
NmeAIII	GCCGAG	1 cut(s)	202
NspI	RCATGY	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	313
PasI	CCCWGGG	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	55, 305
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	16, 17, 18
PspOMI	GGGCCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	15, 16
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	408
SatI	GCNGC	2 cut(s)	54, 304
Sau3AI	GATC	2 cut(s)	246, 292
Sau96I	GGNCC	2 cut(s)	15, 16
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	118, 194, 400
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	108, 142, 297
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	69, 227
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	256
TasI	AATT	3 cut(s)	108, 142, 297
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	306
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	183, 219
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	2 cut(s)	108, 142
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	2 cut(s)	69, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.