Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0022256

Physical Location & Seq

Genomic Coordinates Reverse (-)

30700726 .. 30702810

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTTGCATTCCACTGAAATGTCACTGGTACTTGGGGCAAAGCGCTTCCTAGAGTGGAGACATTCCAAATACATGATGGGTAGAATCTCAGAGTATCCTGTACTGGCTGCCCTGGGAGGGGAGGTTGTAAACATGCAACAGATTCGCGCATTCCTCAGGGTGCATTTGAAAGATTATGGACTTCTAGATTTTGATGCAAGTGATGTTAGTAATCCACCTCCTGTCGATACCACTTGGCAGCAGATCTACTTTTGCCTGAGATCTGGGTATAATGATGAAGCAAGAACAGTTGCTGCATCATCGAATGCTTCACAGGAGTTTGCGCCACCGCTGAACGAGTGGATCACATCTGGAGGGAGGGTGTCTCCGGAGACCTCAGCTAGAGCTTCATATGAGTTGGATATGATGTTGAGGACATATGATGTTGAGGGTGGAGCTGGTTACGAGAAGGAGAAGATGTTAGTATATGCTCTCGTATCTGGTTCAAGAAGCCTCTTCCACCGCCTGCGGGAAGATTATTCACCTCTATTTGACACTGATGAGCATTACCACTGGTTCATGTTAGCGTCTATTAGAGATATCCCAGTTGGAGCTGCATCCACTGTCACGCATGCTGGCTTGGAGACACTCACATTGAGCGATTTGCAGGTCTATGTGAATACCTCTGGCCCAGATGAAGCAGACCGTCTCATGTATCCTTATCTTTTACTTTTGAGCATCCAGTTGATACCAGCTATCACATACATGTTTGAGGAGTATGACATTGATGCTGCCCACGTATCGATTGCGCTAGCAGACCATGGTGTCCTATCAGAAGTTGCTGGTGCTGCACAAGGGATTGGTATGATGGATGCTTATGGAAAAGCATCTCACATCACCAAGCAGTATGGATCTACCAGATTTCTTCCTCATGATATATCAATGGCCTTAGAATATTATGCACAAGCTGCTGCTGTCCTTGGTGGTGGACGGTTGGCATGGCCTATAGGAGGTAATGTGGGTCAGCAGAGGCAGAGAAATGCGAGGCTGAAGCATGTCCTTAGTGAGCTTCTAATGACAGATGGTGGTATCCGCCTTCTTTTTGGTTTTAGAGGCAAGGAAGGTGAACTTGCAAGATTCTTCCCTGATGTGAATGAAAGGATTCAGTTCCTGCATGAAGCTGCACGACAATGTCAGGAATTTGGGTTGCCTGGCAAGTGTCGAGAGATTAAAGCTGAGATTCGACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

411

Amino Acids

45.79

Weight (kDa)

5.65

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	5 - 393	2.2e-44	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022256)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38800
rosa_chinensis	RchiOBHm_Chr2g0152371 RchiOBHm_Chr2g0152381
rosa_rugosa	Rorug02G0432600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	637
AccII	CGCG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	4 cut(s)	329, 502, 508, 1072
AclWI	GGATC	2 cut(s)	350, 898
AcsI	RAATTY	1 cut(s)	1178
AcuI	CTGAAG	1 cut(s)	1049
AfaI	GTAC	2 cut(s)	30, 102
AfeI	AGCGCT	1 cut(s)	44
AfiI	CCNNNNNNNGG	4 cut(s)	117, 118, 508, 989
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	2 cut(s)	169, 486
AjnI	CCWGG	2 cut(s)	111, 1189
AluBI	AGCT	9 cut(s)	380, 386, 437, 593, 734, 947, 1048, 1160, 1214
AluI	AGCT	9 cut(s)	380, 386, 437, 593, 734, 947, 1048, 1160, 1214
Alw26I	GTCTC	5 cut(s)	52, 365, 369, 617, 692
AlwI	GGATC	2 cut(s)	350, 898
AlwNI	CAGNNNCTG	2 cut(s)	293, 1150
Aor13HI	TCCGGA	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	44
AoxI	GGCC	3 cut(s)	667, 924, 980
ApeKI	GCWGC	9 cut(s)	107, 238, 293, 593, 770, 827, 947, 950, 1160
ApoI	RAATTY	1 cut(s)	1178
Asp700I	GAANNNNTTC	1 cut(s)	1140
AspLEI	GCGC	4 cut(s)	45, 149, 325, 790
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	513, 868, 1115
AsuNHI	GCTAGC	1 cut(s)	790
AxyI	CCTNAGG	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	9 cut(s)	94, 250, 280, 580, 757, 814, 934, 937, 1147
BccI	CCATC	3 cut(s)	70, 841, 1055
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	2 cut(s)	113, 1191
BciVI	GTATCC	3 cut(s)	105, 705, 1079
BcoDI	GTCTC	5 cut(s)	52, 365, 369, 617, 692
BfaI	CTAG	4 cut(s)	50, 185, 381, 791
BfmI	CTRYAG	1 cut(s)	984
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	3 cut(s)	105, 705, 1079
BglII	AGATCT	2 cut(s)	243, 260
BisI	GCNGC	9 cut(s)	108, 239, 294, 594, 771, 828, 948, 951, 1161
BlsI	GCNGC	9 cut(s)	109, 240, 295, 595, 772, 829, 949, 952, 1162
Bme1390I	CCNGG	2 cut(s)	113, 1191
BmgT120I	GGNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	113, 1191
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	7 cut(s)	184, 305, 605, 726, 757, 841, 875
BmtI	GCTAGC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	111, 112, 799, 958
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 138, 345, 375, 443, 473, 981, 1011
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 118, 508, 989
Bse1I	ACTGG	5 cut(s)	30, 108, 557, 584, 721
Bse21I	CCTNAGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	113, 1191
BseCI	ATCGAT	1 cut(s)	782
BseDI	CCNNGG	4 cut(s)	111, 112, 799, 958
BseGI	GGATG	3 cut(s)	596, 717, 856
BseLI	CCNNNNNNNGG	4 cut(s)	117, 118, 508, 989
BseMII	CTCAG	5 cut(s)	102, 169, 248, 390, 1206
BseNI	ACTGG	5 cut(s)	30, 108, 557, 584, 721
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	9 cut(s)	94, 250, 280, 580, 757, 814, 934, 937, 1147
BsgI	GTGCAG	2 cut(s)	813, 1146
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	669, 926, 982
BshVI	ATCGAT	1 cut(s)	782
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	117, 118, 508, 989
BsmAI	GTCTC	5 cut(s)	52, 365, 369, 617, 692
BsmBI	CGTCTC	1 cut(s)	692
BsmI	GAATGC	3 cut(s)	7, 149, 310
BsnI	GGCC	3 cut(s)	669, 926, 982
Bso31I	GGTCTC	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	243, 260, 342, 890
Bsp19I	CCATGG	1 cut(s)	799
BspACI	CCGC	4 cut(s)	329, 502, 508, 1072
BspANI	GGCC	3 cut(s)	669, 926, 982
BspCNI	CTCAG	5 cut(s)	101, 168, 249, 389, 1207
BspDI	ATCGAT	1 cut(s)	782
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	637
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	350, 898
BspTNI	GGTCTC	1 cut(s)	365
BsrI	ACTGG	5 cut(s)	30, 108, 557, 584, 721
BssECI	CCNNGG	4 cut(s)	111, 112, 799, 958
BssMI	GATC	4 cut(s)	243, 260, 342, 890
BssT1I	CCWWGG	2 cut(s)	799, 958
Bst2UI	CCWGG	2 cut(s)	113, 1191
Bst4CI	ACNGT	4 cut(s)	289, 604, 686, 972
Bst6I	CTCTTC	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	4 cut(s)	506, 612, 616, 792
BstDEI	CTNAG	7 cut(s)	88, 155, 257, 376, 928, 1040, 1215
BstDSI	CCRYGG	1 cut(s)	799
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	3 cut(s)	596, 717, 856
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	4 cut(s)	45, 149, 325, 790
BstKTI	GATC	4 cut(s)	246, 263, 345, 893
BstMAI	GTCTC	5 cut(s)	52, 365, 369, 617, 692
BstMBI	GATC	4 cut(s)	243, 260, 342, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	827, 947
BstNI	CCWGG	2 cut(s)	113, 1191
BstNSI	RCATGY	4 cut(s)	136, 614, 748, 1037
BstSCI	CCNGG	2 cut(s)	111, 1189
BstSFI	CTRYAG	1 cut(s)	984
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	9 cut(s)	94, 250, 280, 580, 757, 814, 934, 937, 1147
BstX2I	RGATCY	3 cut(s)	243, 260, 890
BstYI	RGATCY	3 cut(s)	243, 260, 890
Bsu15I	ATCGAT	1 cut(s)	782
Bsu36I	CCTNAGG	1 cut(s)	155
BsuI	GTATCC	3 cut(s)	105, 705, 1079
BsuRI	GGCC	3 cut(s)	669, 926, 982
BsuTUI	ATCGAT	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	3 cut(s)	596, 717, 856
BtsIMutI	CAGTG	5 cut(s)	12, 23, 534, 550, 600
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	506, 612, 616, 792
CaiI	CAGNNNCTG	2 cut(s)	293, 1150
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	4 cut(s)	45, 149, 325, 790
Cfr13I	GGNCC	1 cut(s)	668
ClaI	ATCGAT	1 cut(s)	782
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	29, 101
CviQI	GTAC	2 cut(s)	29, 101
DdeI	CTNAG	7 cut(s)	88, 155, 257, 376, 928, 1040, 1215
DpnI	GATC	4 cut(s)	245, 262, 344, 892
DpnII	GATC	4 cut(s)	243, 260, 342, 890
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	1 cut(s)	1061
Eco130I	CCWWGG	2 cut(s)	799, 958
Eco31I	GGTCTC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	580
Eco47III	AGCGCT	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	1049
Eco81I	CCTNAGG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoRII	CCWGG	2 cut(s)	111, 1189
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	2 cut(s)	799, 958
ErhI	CCWWGG	2 cut(s)	799, 958
Esp3I	CGTCTC	1 cut(s)	692
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FauI	CCCGC	1 cut(s)	501
FauNDI	CATATG	2 cut(s)	391, 418
Fnu4HI	GCNGC	9 cut(s)	108, 239, 294, 594, 771, 828, 948, 951, 1161
FokI	GGATG	3 cut(s)	583, 704, 863
Fsp4HI	GCNGC	9 cut(s)	108, 239, 294, 594, 771, 828, 948, 951, 1161
FspBI	CTAG	4 cut(s)	50, 185, 381, 791
GlaI	GCGC	4 cut(s)	44, 148, 324, 789
GluI	GCNGC	9 cut(s)	108, 239, 294, 594, 771, 828, 948, 951, 1161
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	3 cut(s)	669, 926, 982
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	4 cut(s)	45, 149, 325, 790
Hin6I	GCGC	4 cut(s)	43, 147, 323, 788
HinP1I	GCGC	4 cut(s)	43, 147, 323, 788
HinfI	GANTC	5 cut(s)	84, 142, 1116, 1141, 1219
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	513, 868, 1115
Hpy166II	GTNNAC	3 cut(s)	130, 968, 1106
Hpy188I	TCNGA	2 cut(s)	91, 814
Hpy188III	TCNNGA	7 cut(s)	185, 351, 368, 486, 911, 1175, 1202
Hpy8I	GTNNAC	3 cut(s)	130, 968, 1106
Hpy99I	CGWCG	1 cut(s)	1227
HpyAV	CCTTC	3 cut(s)	442, 1085, 1094
HpyCH4III	ACNGT	4 cut(s)	289, 604, 686, 972
HpyCH4IV	ACGT	1 cut(s)	777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	827, 947
HpyF3I	CTNAG	7 cut(s)	88, 155, 257, 376, 928, 1040, 1215
HpySE526I	ACGT	1 cut(s)	777
HspAI	GCGC	4 cut(s)	43, 147, 323, 788
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	243, 260, 342, 890
LmnI	GCTCC	2 cut(s)	434, 590
Lsp1109I	GCAGC	9 cut(s)	94, 250, 280, 580, 757, 814, 934, 937, 1147
LweI	GCATC	7 cut(s)	184, 305, 605, 726, 757, 841, 875
MaeI	CTAG	4 cut(s)	50, 185, 381, 791
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	3 cut(s)	21, 440, 604
MalI	GATC	4 cut(s)	245, 262, 344, 892
MboI	GATC	4 cut(s)	243, 260, 342, 890
MboII	GAAGA	5 cut(s)	466, 487, 524, 896, 1111
MflI	RGATCY	3 cut(s)	243, 260, 890
MluCI	AATT	1 cut(s)	1178
MmeI	TCCRAC	2 cut(s)	378, 568
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	1140
MseI	TTAA	1 cut(s)	1209
MslI	CAYNNNNRTG	3 cut(s)	17, 743, 1168
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	113, 1191
Mva1269I	GAATGC	3 cut(s)	7, 149, 310
MvaI	CCWGG	2 cut(s)	113, 1191
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	827, 947
NcoI	CCATGG	1 cut(s)	799
NdeI	CATATG	2 cut(s)	391, 418
NdeII	GATC	4 cut(s)	243, 260, 342, 890
NheI	GCTAGC	1 cut(s)	790
NmuCI	GTSAC	2 cut(s)	21, 604
NspI	RCATGY	4 cut(s)	136, 614, 748, 1037
PaeI	GCATGC	1 cut(s)	614
PagI	TCATGA	1 cut(s)	910
PasI	CCCWGGG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	744
PctI	GAATGC	3 cut(s)	7, 149, 310
PdmI	GAANNNNTTC	1 cut(s)	1140
PfeI	GAWTC	5 cut(s)	84, 142, 1116, 1141, 1219
PflFI	GACNNNGTC	1 cut(s)	1170
PkrI	GCNGC	9 cut(s)	109, 240, 295, 595, 772, 829, 949, 952, 1162
Ppu21I	YACGTR	1 cut(s)	778
PscI	ACATGT	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	111, 1189
PspGI	CCWGG	2 cut(s)	111, 1189
PspPI	GGNCC	1 cut(s)	668
PstNI	CAGNNNCTG	2 cut(s)	293, 1150
PsuI	RGATCY	3 cut(s)	243, 260, 890
PsyI	GACNNNGTC	1 cut(s)	1170
RsaI	GTAC	2 cut(s)	30, 102
RsaNI	GTAC	2 cut(s)	29, 101
RseI	CAYNNNNRTG	3 cut(s)	17, 743, 1168
SaqAI	TTAA	1 cut(s)	1209
SatI	GCNGC	9 cut(s)	108, 239, 294, 594, 771, 828, 948, 951, 1161
Sau3AI	GATC	4 cut(s)	243, 260, 342, 890
Sau96I	GGNCC	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	113, 1191
SfaNI	GCATC	7 cut(s)	184, 305, 605, 726, 757, 841, 875
SfcI	CTRYAG	1 cut(s)	984
SmiMI	CAYNNNNRTG	3 cut(s)	17, 743, 1168
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	1 cut(s)	1178
SsiI	CCGC	4 cut(s)	329, 502, 508, 1072
SspI	AATATT	1 cut(s)	935
SspMI	CTAG	4 cut(s)	50, 185, 381, 791
StyD4I	CCNGG	2 cut(s)	111, 1189
StyI	CCWWGG	2 cut(s)	799, 958
TaaI	ACNGT	4 cut(s)	289, 604, 686, 972
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	5 cut(s)	225, 302, 782, 1201, 1222
TasI	AATT	1 cut(s)	1178
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	5 cut(s)	84, 142, 1116, 1141, 1219
Tru1I	TTAA	1 cut(s)	1209
Tru9I	TTAA	1 cut(s)	1209
TscAI	CASTG	5 cut(s)	19, 30, 541, 557, 607
TseFI	GTSAC	2 cut(s)	21, 604
TseI	GCWGC	9 cut(s)	107, 238, 293, 593, 770, 827, 947, 950, 1160
Tsp45I	GTSAC	2 cut(s)	21, 604
TspDTI	ATGAA	6 cut(s)	291, 378, 547, 690, 1149, 1170
TspRI	CASTG	5 cut(s)	19, 30, 541, 557, 607
Tth111I	GACNNNGTC	1 cut(s)	1170
XagI	CCTNNNNNAGG	1 cut(s)	987
XapI	RAATTY	1 cut(s)	1178
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	4 cut(s)	136, 614, 748, 1037
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	1140
XspI	CTAG	4 cut(s)	50, 185, 381, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.