Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0022256

Physical Location & Seq

Genomic Coordinates Reverse (-)

55384472 .. 55385692

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTTGGTTTTTGCTGTAGAAAATTGCAATTACTATTTCCCAGTTGTAGCTTTGCTGTTGATTATTCAGTCACCCATTTTCAAAAGGCATCTCATTTTACAAGATTATATTCATCAAAATCATTATTAAGGGCCCAAGGTAAAAAAGATTGCTCTTTTACAGTTTCTTACCTTATAAATTCATGTGGGTTATCCCCAGAACTTGCTCTCTCTTTGTCCAAGAGGCATAGGGTACACTTTGAATCCCCAGAAAAACCAGACTCAGTTGTTAAGCTTTTCAAGGACTATGGATTCAGCAATGCCCACAACTCTGAAATTGTCAAGAAACTCCCAGAGCTGCTCTTAGTCAGTGAGAAGACCCTTTTGCCTAAACTTGAGTTCTTGGGTTCCATTGGAATTACAGGCACTCCCCTGGCTGAGACCCTTTGCGGCAACCCAACTGTGTTGAAAATGAGCTTAGAGAATTGTATTAGACCTTGTTGTGATATCATCAAAACTCTAGGTATCCCTTATGGAAAGGTCCCTCGTTTCATTAAGAGATCGCAGTGGTTGTTTAAGGTCAAAGTACTGAGCAATGTTGCTCGCAATGTTTCAGTACTGAGGTCACTAAAAGTGCCAGAATCCACAATCGATTTGTGTAGGCCCCACAATCTTGTTCCAGTGTCCACTGATGCCGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGTATGGGATTTCCTCCTTCAAGCTGTACATTTATGAAAGCACTGTATGTGATTTCTATGATGGATGAATCAAAATTGGCACAGAGGAAGGAGTTTTATAGGAAGTTTGGTTGGACTGAAGATAATATATTGTTGGCATTTAGAAAGAATCCCATTTTTATGTCCATTTCTGAGAAGAATTTTTTGAGTAAAATGGATTTTCTTGTGAACAAAATGGGTTTACAGCCGGCTGATGTGGCTGGATATCCCAGTGTTCTAACTAATAGTTTGGAGAAATGGATCATAGCTAGGTGTTCAGTTATCAGAGTTCTGCTGTTGAAGGGCTTAATACGGAAGGGACAATTTTCTTTACTTGGTACCGCGTTAATGGGCAATAAAGACCTGTTCTTGCATAGATTTGTGAACAAGTATCAAGAGCAAGTACCCGAATTATTGAGCATCTTTCAAGGAAAAATTGGTCTTGCAGAACTGGGCTTAGGATTTGAGGAAAGAGATGGAGTGAAACAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

406

Amino Acids

45.82

Weight (kDa)

9.42

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	91 - 209	1.6e-12	mTERF
mTERF	PF02536	254 - 352	2.2e-13	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022256)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38800
rosa_chinensis	RchiOBHm_Chr2g0152371 RchiOBHm_Chr2g0152381
rosa_rugosa	Rorug02G0432600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	1064
AccB1I	GGYRCC	1 cut(s)	1064
AccII	CGCG	1 cut(s)	1070
AciI	CCGC	2 cut(s)	429, 1068
AclWI	GGATC	1 cut(s)	995
AcsI	RAATTY	2 cut(s)	178, 886
AcuI	CTGAAG	1 cut(s)	846
AfaI	GTAC	6 cut(s)	234, 567, 597, 736, 1066, 1131
AgsI	TTSAA	7 cut(s)	83, 242, 280, 448, 729, 1027, 1154
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	6 cut(s)	51, 274, 337, 456, 732, 995
AluI	AGCT	6 cut(s)	51, 274, 337, 456, 732, 995
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	995
AoxI	GGCC	2 cut(s)	132, 641
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	178, 886
Asp718I	GGTACC	1 cut(s)	1064
AspS9I	GGNCC	4 cut(s)	132, 133, 520, 642
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	763, 1196
BciT130I	CCWGG	1 cut(s)	413
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	500, 996
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	2 cut(s)	338, 430
BlsI	GCNGC	2 cut(s)	339, 431
BmcAI	AGTACT	2 cut(s)	567, 597
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	4 cut(s)	132, 133, 520, 642
BmiI	GGNNCC	5 cut(s)	134, 388, 522, 644, 1066
BmrFI	CCNGG	1 cut(s)	413
BmrI	ACTGGG	3 cut(s)	36, 951, 1187
BmsI	GCATC	3 cut(s)	98, 661, 1155
BmuI	ACTGGG	3 cut(s)	36, 951, 1187
BpiI	GAAGAC	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	1183
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	136, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bse118I	RCCGGY	1 cut(s)	934
Bse1I	ACTGG	4 cut(s)	42, 659, 957, 1182
Bse3DI	GCAATG	3 cut(s)	304, 580, 592
BseBI	CCWGG	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	136, 411
BseGI	GGATG	1 cut(s)	778
BseMI	GCAATG	3 cut(s)	304, 580, 592
BseMII	CTCAG	5 cut(s)	276, 408, 560, 590, 870
BseNI	ACTGG	4 cut(s)	42, 659, 957, 1182
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	1070
BshFI	GGCC	2 cut(s)	134, 643
BshNI	GGYRCC	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	2 cut(s)	506, 1059
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	2 cut(s)	506, 1059
BsnI	GGCC	2 cut(s)	134, 643
Bso31I	GGTCTC	1 cut(s)	413
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	539, 987
BspACI	CCGC	2 cut(s)	429, 1068
BspANI	GGCC	2 cut(s)	134, 643
BspCNI	CTCAG	5 cut(s)	275, 409, 561, 591, 871
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	1070
BspLI	GGNNCC	5 cut(s)	134, 388, 522, 644, 1066
BspPI	GGATC	1 cut(s)	995
BspT107I	GGYRCC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	3 cut(s)	304, 580, 592
BsrFI	RCCGGY	1 cut(s)	934
BsrGI	TGTACA	1 cut(s)	734
BsrI	ACTGG	4 cut(s)	42, 659, 957, 1182
BssAI	RCCGGY	1 cut(s)	934
BssECI	CCNNGG	2 cut(s)	136, 411
BssMI	GATC	2 cut(s)	539, 987
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	163, 442, 753
BstAUI	TGTACA	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	583, 936
BstDEI	CTNAG	8 cut(s)	262, 343, 417, 457, 569, 599, 879, 1183
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	1 cut(s)	1070
BstKTI	GATC	2 cut(s)	542, 990
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	539, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	134, 643
BsuTUI	ATCGAT	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	6 cut(s)	355, 551, 666, 666, 749, 964
Cac8I	GCNNGC	2 cut(s)	583, 936
Cfr10I	RCCGGY	1 cut(s)	934
Cfr13I	GGNCC	4 cut(s)	132, 133, 520, 642
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	6 cut(s)	233, 566, 596, 735, 1065, 1130
CviAII	CATG	1 cut(s)	183
CviQI	GTAC	6 cut(s)	233, 566, 596, 735, 1065, 1130
DdeI	CTNAG	8 cut(s)	262, 343, 417, 457, 569, 599, 879, 1183
DpnI	GATC	2 cut(s)	541, 989
DpnII	GATC	2 cut(s)	539, 987
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	413
Eco32I	GATATC	2 cut(s)	487, 953
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	846
EcoO109I	RGGNCCY	3 cut(s)	132, 520, 642
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	2 cut(s)	487, 953
EcoT14I	CCWWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	186
FaqI	GGGAC	2 cut(s)	506, 1059
FatI	CATG	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	338, 430
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	338, 430
FspBI	CTAG	2 cut(s)	500, 996
GluI	GCNGC	2 cut(s)	338, 430
HaeIII	GGCC	2 cut(s)	134, 643
HapII	CCGG	1 cut(s)	935
Hin1II	CATG	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	6 cut(s)	242, 260, 291, 620, 776, 856
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	6 cut(s)	235, 666, 697, 916, 929, 1111
Hpy188I	TCNGA	3 cut(s)	313, 880, 1013
Hpy188III	TCNNGA	2 cut(s)	322, 1121
Hpy8I	GTNNAC	6 cut(s)	235, 666, 697, 916, 929, 1111
HpyAV	CCTTC	4 cut(s)	735, 790, 1021, 1036
HpyCH4III	ACNGT	3 cut(s)	163, 442, 753
HpyCH4V	TGCA	3 cut(s)	28, 1099, 1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	8 cut(s)	262, 343, 417, 457, 569, 599, 879, 1183
Hsp92II	CATG	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	1068
KroI	GCCGGC	1 cut(s)	934
KroNI	GCCGGC	1 cut(s)	936
Kzo9I	GATC	2 cut(s)	539, 987
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	3 cut(s)	98, 661, 1155
MaeI	CTAG	2 cut(s)	500, 996
MaeIII	GTNAC	2 cut(s)	70, 603
MalI	GATC	2 cut(s)	541, 989
MboI	GATC	2 cut(s)	539, 987
MboII	GAAGA	3 cut(s)	367, 839, 895
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	800
MnlI	CCTC	6 cut(s)	216, 534, 594, 732, 786, 1186
MroNI	GCCGGC	1 cut(s)	934
MseI	TTAA	7 cut(s)	128, 270, 534, 555, 684, 1034, 1073
MslI	CAYNNNNRTG	2 cut(s)	710, 866
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	1 cut(s)	944
NaeI	GCCGGC	1 cut(s)	936
NdeII	GATC	2 cut(s)	539, 987
NgoMIV	GCCGGC	1 cut(s)	934
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	5 cut(s)	134, 388, 522, 644, 1066
NmuCI	GTSAC	2 cut(s)	70, 603
PdiI	GCCGGC	1 cut(s)	936
PfeI	GAWTC	5 cut(s)	242, 291, 620, 776, 856
PkrI	GCNGC	2 cut(s)	339, 431
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	5 cut(s)	134, 388, 522, 644, 1066
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	132, 133, 520, 642
PspPPI	RGGWCCY	1 cut(s)	520
RsaI	GTAC	6 cut(s)	234, 567, 597, 736, 1066, 1131
RsaNI	GTAC	6 cut(s)	233, 566, 596, 735, 1065, 1130
RseI	CAYNNNNRTG	2 cut(s)	710, 866
SaqAI	TTAA	7 cut(s)	128, 270, 534, 555, 684, 1034, 1073
SatI	GCNGC	2 cut(s)	338, 430
Sau3AI	GATC	2 cut(s)	539, 987
Sau96I	GGNCC	4 cut(s)	132, 133, 520, 642
ScaI	AGTACT	2 cut(s)	567, 597
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	3 cut(s)	98, 661, 1155
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	2 cut(s)	710, 866
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	2 cut(s)	429, 1068
SspMI	CTAG	2 cut(s)	500, 996
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	163, 442, 753
TaqI	TCGA	1 cut(s)	630
TatI	WGTACW	3 cut(s)	565, 595, 734
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	5 cut(s)	242, 291, 620, 776, 856
Tru1I	TTAA	7 cut(s)	128, 270, 534, 555, 684, 1034, 1073
Tru9I	TTAA	7 cut(s)	128, 270, 534, 555, 684, 1034, 1073
TscAI	CASTG	6 cut(s)	355, 551, 666, 673, 756, 964
TseFI	GTSAC	2 cut(s)	70, 603
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	70, 603
TspDTI	ATGAA	6 cut(s)	102, 171, 520, 702, 758, 789
TspGWI	ACGGA	1 cut(s)	1054
TspRI	CASTG	6 cut(s)	355, 551, 666, 673, 756, 964
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	178, 886
XspI	CTAG	2 cut(s)	500, 996
ZrmI	AGTACT	2 cut(s)	567, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.