Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022256

Physical Location & Seq

Genomic Coordinates Reverse (-)

69786511 .. 69787858

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTGTCTGTGGAGATTGCAGCCACAGCTTCTGATGAATTGGATATGATGTTAAGACCAGTTAATGTTAAGGGTGGAGCTGGATATGAGAAGGAAAAGTTGTTACTATATTCTCTCATATCTGGTTCAAGAAGCCTTTTTGACAGCCTGCTAGAAGATCAGCCAACTCTATTCGACACTGAAGAGGATTTCTACTGGTTTAGATTATCATCTATAAGAGAACCAGTTGGAGCTGCATCCACTGTTATGAATGCTGGCTTGGAACCATACACATTGAAGGATTTGCAGGTCTATGTGAATAACTCTGCCCCAGGAACTTATACAACAAATGGAGCAGACCCTCTGATGTATCCTTATGTTTTGCTTTTAAGTATCCAGTTGATAACAGCTATCGTATACATGTCTAATGAAATTGGAGGTGAAGGGTATAACATTGATGCTGCCCACATATCAATTGCGCTAGCGGACCACGGTGTCCTCTCTGAAGTTGCTGGTGCCGGACAAGGGATTGGTGTGATGGATGCTTATGAAAAGGCATCTCGCATCACCAAGCAGTATGGATCTGTGAATTTCCTTCCTGATAATCTATCAATGGCTTTAGAATATTATGCACAAGCTGCTGCTGTCCTTGGTGGTGGACGGTTGTCGTGGCCTATAAGAGGTAATGTGGATCAGCAAAGGCAGAGAAATTTGATGCTGAAGCACGTCCTGACAGAGCTTTTGATGCGAGAGGGTGGTATCTGCCTTCTTCTTGGTTCAAGAGGCAAGGAAGGTGAACTGTCAAGGTTTTTCACTGATGTGGAAGGAAGGATACAGTTCCTGCATGAAGCTGCTCAGCAGTGTCAGGAAGTTGGGTTATCTGACAAGTCTTTGGAGATTACCAATCGCATTGGAGACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

300

Amino Acids

32.76

Weight (kDa)

4.68

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nic96	PF04097	33 - 296	2.2e-24	Nup93/Nic96

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022256)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38800
rosa_chinensis	RchiOBHm_Chr2g0152371 RchiOBHm_Chr2g0152381
rosa_rugosa	Rorug02G0432600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	568, 678
AcsI	RAATTY	2 cut(s)	568, 688
AcuI	CTGAAG	3 cut(s)	201, 504, 719
AfiI	CCNNNNNNNGG	2 cut(s)	504, 659
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	129, 277, 759
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	7 cut(s)	29, 80, 233, 389, 617, 718, 830
AluI	AGCT	7 cut(s)	29, 80, 233, 389, 617, 718, 830
Alw26I	GTCTC	1 cut(s)	888
AlwI	GGATC	2 cut(s)	568, 678
AlwNI	CAGNNNCTG	2 cut(s)	32, 820
AoxI	GGCC	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	20, 233, 440, 617, 620, 830
ApoI	RAATTY	2 cut(s)	568, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	431, 538, 785
AsuNHI	GCTAGC	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	795, 827
BbvI	GCAGC	6 cut(s)	32, 220, 427, 604, 607, 817
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	3 cut(s)	360, 383, 804
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	2 cut(s)	152, 461
BfuAI	ACCTGC	1 cut(s)	277
BfuI	GTATCC	3 cut(s)	360, 383, 804
BisI	GCNGC	6 cut(s)	21, 234, 441, 618, 621, 831
BlpI	GCTNAGC	1 cut(s)	834
BlsI	GCNGC	6 cut(s)	22, 235, 442, 619, 622, 832
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	466
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	264, 496
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	7 cut(s)	245, 427, 511, 545, 552, 684, 714
BmtI	GCTAGC	1 cut(s)	464
BoxI	GACNNNNGTC	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	310, 469, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 659
Bse1I	ACTGG	4 cut(s)	59, 200, 224, 376
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	310, 469, 628
BseGI	GGATG	2 cut(s)	236, 526
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	504, 659
BseMII	CTCAG	1 cut(s)	848
BseNI	ACTGG	4 cut(s)	59, 200, 224, 376
BseXI	GCAGC	6 cut(s)	32, 220, 427, 604, 607, 817
BshFI	GGCC	1 cut(s)	652
BshNI	GGYRCC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	504, 659
BsmAI	GTCTC	1 cut(s)	888
BsmBI	CGTCTC	1 cut(s)	888
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	157, 560, 670
Bsp1720I	GCTNAGC	1 cut(s)	834
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	652
BspCNI	CTCAG	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	264, 496
BspMI	ACCTGC	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	568, 678
BspT107I	GGYRCC	1 cut(s)	494
BsrI	ACTGG	4 cut(s)	59, 200, 224, 376
BssECI	CCNNGG	3 cut(s)	310, 469, 628
BssMI	GATC	3 cut(s)	157, 560, 670
BssNAI	GTATAC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	628
Bst1107I	GTATAC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	6 cut(s)	244, 473, 642, 780, 816, 899
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	149, 256, 462
BstDEI	CTNAG	1 cut(s)	834
BstDSI	CCRYGG	1 cut(s)	469
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	236, 526
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	3 cut(s)	160, 563, 673
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	3 cut(s)	157, 560, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 617, 724
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	403
BstPAI	GACNNNNGTC	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	6 cut(s)	32, 220, 427, 604, 607, 817
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BstZ17I	GTATAC	1 cut(s)	397
BsuI	GTATCC	3 cut(s)	360, 383, 804
BsuRI	GGCC	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	236, 526
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	4 cut(s)	177, 240, 792, 845
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	149, 256, 462
CaiI	CAGNNNCTG	2 cut(s)	32, 820
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	466
CviAII	CATG	2 cut(s)	400, 824
DdeI	CTNAG	1 cut(s)	834
DpnI	GATC	3 cut(s)	159, 562, 672
DpnII	GATC	3 cut(s)	157, 560, 670
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	3 cut(s)	201, 504, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	2 cut(s)	403, 827
FatI	CATG	2 cut(s)	399, 823
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	21, 234, 441, 618, 621, 831
FokI	GGATG	2 cut(s)	223, 533
Fsp4HI	GCNGC	6 cut(s)	21, 234, 441, 618, 621, 831
FspBI	CTAG	2 cut(s)	152, 461
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	6 cut(s)	21, 234, 441, 618, 621, 831
HaeIII	GGCC	1 cut(s)	652
HapII	CCGG	1 cut(s)	498
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	403, 827
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	3 cut(s)	431, 538, 785
Hpy166II	GTNNAC	3 cut(s)	397, 638, 776
Hpy188I	TCNGA	4 cut(s)	34, 345, 484, 862
Hpy188III	TCNNGA	5 cut(s)	129, 578, 709, 759, 845
Hpy8I	GTNNAC	3 cut(s)	397, 638, 776
HpyAV	CCTTC	8 cut(s)	85, 271, 416, 584, 755, 764, 797, 801
HpyCH4III	ACNGT	6 cut(s)	244, 473, 642, 780, 816, 899
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	5 cut(s)	20, 236, 286, 611, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 617, 724
HpyF3I	CTNAG	1 cut(s)	834
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	2 cut(s)	403, 827
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	157, 560, 670
LmnI	GCTCC	3 cut(s)	77, 230, 332
Lsp1109I	GCAGC	6 cut(s)	32, 220, 427, 604, 607, 817
LweI	GCATC	7 cut(s)	245, 427, 511, 545, 552, 684, 714
MaeI	CTAG	2 cut(s)	152, 461
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	3 cut(s)	159, 562, 672
MboI	GATC	3 cut(s)	157, 560, 670
MboII	GAAGA	3 cut(s)	167, 194, 740
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	560
MluCI	AATT	5 cut(s)	38, 411, 453, 568, 688
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	7 cut(s)	178, 351, 410, 488, 653, 724, 755
MseI	TTAA	4 cut(s)	53, 63, 69, 368
MslI	CAYNNNNRTG	2 cut(s)	245, 797
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	26, 617, 724
NdeII	GATC	3 cut(s)	157, 560, 670
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	403, 827
NlaIV	GGNNCC	2 cut(s)	264, 496
NspI	RCATGY	1 cut(s)	403
OliI	CACNNNNGTG	1 cut(s)	797
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	22, 235, 442, 619, 622, 832
PscI	ACATGT	1 cut(s)	399
PshAI	GACNNNNGTC	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	264, 496
PspPI	GGNCC	1 cut(s)	466
PstNI	CAGNNNCTG	2 cut(s)	32, 820
PsuI	RGATCY	1 cut(s)	560
RseI	CAYNNNNRTG	2 cut(s)	245, 797
SaqAI	TTAA	4 cut(s)	53, 63, 69, 368
SatI	GCNGC	6 cut(s)	21, 234, 441, 618, 621, 831
Sau3AI	GATC	3 cut(s)	157, 560, 670
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	7 cut(s)	245, 427, 511, 545, 552, 684, 714
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	2 cut(s)	245, 797
Sse9I	AATT	5 cut(s)	38, 411, 453, 568, 688
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	2 cut(s)	152, 461
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	6 cut(s)	244, 473, 642, 780, 816, 899
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	1 cut(s)	174
TasI	AATT	5 cut(s)	38, 411, 453, 568, 688
Tru1I	TTAA	4 cut(s)	53, 63, 69, 368
Tru9I	TTAA	4 cut(s)	53, 63, 69, 368
TscAI	CASTG	4 cut(s)	184, 247, 799, 845
TseI	GCWGC	6 cut(s)	20, 233, 440, 617, 620, 830
TspDTI	ATGAA	5 cut(s)	51, 263, 423, 543, 840
TspRI	CASTG	4 cut(s)	184, 247, 799, 845
VpaK11BI	GGWCC	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	2 cut(s)	568, 688
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	152, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.