FvH4_6g41001

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0021101
Physical Location & Seq
Forward (+)
32381074 .. 32382245
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41001.t1

Sequence Viewer

Length: 456 bp
ATGCCTCTACCTTTCCGACAGCATGACAATGACAATGACAGGCCAGAACAGAAAGGGAAAGTTCCACTGAACTTGATGATGCAGACAATTGAGAAGTTCTATTTTAATTTGCCTTCTGAACAATTAGGCAATGGTCAGGCAAGGAATTTTGGCAGAGCTGCCAGGAAGGCAAGAACTTCCAAAGCACAAGCTTATGTGGCTGGTATTCACAAACCACACACATTGCAGCCTTCTGCCACATGCCTACTGGATAACATCTACCTCCCTCCTGATCAACACCATCCCACCTCAAACAGAAAACTAGCCATGGCAACCTCTCAAATCCAGCAGTCAGCATTTGCCGGCCAGACCGCATTGAAGCAGTCGAATGAGCTCATCAAAAAGATTGGAGGCCTTGGTGGTGGCCCCATCACAATGAGGCGCACTGTTAAGAGTGCCCCCGAAAGTATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

10.12

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021101)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41001
pyrus_communis pycom17g10500
rosa_multiflora Rmu_sc0036638.1_g000001
rosa_samantha Rh2CG505300 Rh2CG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 145
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 3 cut(s) 158, 191, 373
AluI AGCT 3 cut(s) 158, 191, 373
Alw21I GWGCWC 1 cut(s) 375
AoxI GGCC 4 cut(s) 41, 343, 391, 403
ApeKI GCWGC 2 cut(s) 158, 226
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 145, 238
BccI CCATC 2 cut(s) 288, 416
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 271
BfaI CTAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 2 cut(s) 159, 227
BlsI GCNGC 2 cut(s) 160, 228
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 306, 394
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 136, 221
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 306, 394
BseGI GGATG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 136, 221
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 2 cut(s) 145, 238
BshFI GGCC 4 cut(s) 43, 345, 393, 405
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 342
BsnI GGCC 4 cut(s) 43, 345, 393, 405
Bsp1286I GDGCHC 2 cut(s) 375, 439
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 351
BspANI GGCC 4 cut(s) 43, 345, 393, 405
BspLI GGNNCC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 136, 221
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 306, 394
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 2 cut(s) 306, 394
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 167, 197
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 2 cut(s) 145, 238
BsuRI GGCC 4 cut(s) 43, 345, 393, 405
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 65, 423
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 404
CspCI CAANNNNNGTGG 4 cut(s) 54, 89, 204, 239
CviAII CATG 3 cut(s) 23, 240, 307
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 2 cut(s) 306, 394
Eco147I AGGCCT 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 306, 394
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 306, 394
FaeI CATG 3 cut(s) 26, 243, 310
FaiI YATR 6 cut(s) 24, 195, 241, 308, 449, 451
FatI CATG 3 cut(s) 22, 239, 306
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 159, 227
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 159, 227
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 159, 227
HaeIII GGCC 4 cut(s) 43, 345, 393, 405
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 26, 243, 310
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 189
HpaII CCGG 1 cut(s) 342
Hpy188I TCNGA 2 cut(s) 17, 118
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 123, 160, 240
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 82, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 197
Hsp92II CATG 3 cut(s) 26, 243, 310
HspAI GCGC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
Lsp1109I GCAGC 2 cut(s) 145, 238
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 302
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MfeI CAATTG 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 375, 439
MluCI AATT 4 cut(s) 87, 106, 122, 145
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 7 cut(s) 15, 272, 276, 298, 325, 383, 411
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 2 cut(s) 105, 429
MslI CAYNNNNRTG 2 cut(s) 27, 413
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 167, 197
NaeI GCCGGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 3 cut(s) 26, 243, 310
NlaIV GGNNCC 1 cut(s) 406
NspI RCATGY 1 cut(s) 243
PceI AGGCCT 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 160, 228
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 27, 413
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 105, 429
SatI GCNGC 2 cut(s) 159, 227
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 2 cut(s) 375, 439
SetI ASST 7 cut(s) 13, 160, 193, 264, 290, 317, 375
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 2 cut(s) 27, 413
Sse9I AATT 4 cut(s) 87, 106, 122, 145
SseBI AGGCCT 1 cut(s) 393
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 306, 394
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 365
TasI AATT 4 cut(s) 87, 106, 122, 145
Tru1I TTAA 2 cut(s) 105, 429
Tru9I TTAA 2 cut(s) 105, 429
TscAI CASTG 2 cut(s) 72, 430
TseI GCWGC 2 cut(s) 158, 226
TspRI CASTG 2 cut(s) 72, 430
XapI RAATTY 1 cut(s) 145
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.