Rh2CG505300

Chlorophyll a-b binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0021101
Physical Location & Seq
Forward (+)
67732037 .. 67733712
1676 bp
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UTR
Exon/CDS
Intron
Rh2CG505300.1

Sequence Viewer

Length: 183 bp
ATGGCAACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGACTGCTTTGAAGCCATCGAATGAGCTCGTCCGAAAGATTGGCGGCCTTGGTGGTGGCCGTATCTCCATGAGGCGCACTGTCAAAAGTGCCCCAGAAAGCATATGTTATCAGTGGCTATGTGATGTGCTCATGTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

60

Amino Acids

6.46

Weight (kDa)

9.65

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021101)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41001
pyrus_communis pycom17g10500
rosa_multiflora Rmu_sc0036638.1_g000001
rosa_samantha Rh2CG505300 Rh2CG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 27, 84
AcoI YGGCCR 2 cut(s) 37, 97
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 2 cut(s) 69, 171
AoxI GGCC 3 cut(s) 37, 85, 97
AspLEI GCGC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 171
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 84
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 133
BshFI GGCC 3 cut(s) 39, 87, 99
BsiHKAI GWGCWC 2 cut(s) 69, 171
BsiSI CCGG 1 cut(s) 36
BsnI GGCC 3 cut(s) 39, 87, 99
Bsp1286I GDGCHC 3 cut(s) 69, 133, 171
BspACI CCGC 2 cut(s) 27, 84
BspANI GGCC 3 cut(s) 39, 87, 99
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 37
BstHHI GCGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 39, 87, 99
BtsIMutI CAGTG 2 cut(s) 117, 158
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 35
CviAII CATG 2 cut(s) 109, 172
CviJI RGCY 6 cut(s) 39, 55, 67, 87, 99, 157
CviKI_1 RGCY 6 cut(s) 39, 55, 67, 87, 99, 157
EaeI YGGCCR 2 cut(s) 37, 97
EciI GGCGGA 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 112, 175
FaiI YATR 5 cut(s) 110, 143, 145, 160, 173
FatI CATG 2 cut(s) 108, 171
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 85
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 3 cut(s) 39, 87, 99
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 112, 175
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 112, 175
HspAI GCGC 1 cut(s) 115
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 32, 49, 53, 147
MhlI GDGCHC 3 cut(s) 69, 133, 171
MnlI CCTC 2 cut(s) 19, 105
MroNI GCCGGC 1 cut(s) 35
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 143
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 112, 175
PdiI GCCGGC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 69
SatI GCNGC 1 cut(s) 85
SduI GDGCHC 3 cut(s) 69, 133, 171
SetI ASST 2 cut(s) 11, 69
SgeI CNNG 7 cut(s) 31, 48, 52, 80, 101, 121, 146
SsiI CCGC 2 cut(s) 27, 84
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 59
TauI GCSGC 1 cut(s) 87
TscAI CASTG 2 cut(s) 124, 158
TspRI CASTG 2 cut(s) 124, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.