Rmu_sc0036638.1_g000001

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036638.1
OG0021101
Physical Location & Seq
Reverse (-)
2 .. 600
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036638.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
atggcaacctctcaaatccagcagtcagcatttgccggccagaccgcattgaagcaatcaaatgagctcatccaaaagattggaggccttggtggtggccgcatcacgatgaggcgcactgttaagagtgcccccgaaagcatatggtatggccctgaccgtccaaaatacttgggaccattctccgagcaaactccatcctacttgactggtgaattcccaggcgactacggatgggacactgctggactatctgcagaccccgagacctttgccaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

92

Amino Acids

9.93

Weight (kDa)

5.21

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021101)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41001
pyrus_communis pycom17g10500
rosa_multiflora Rmu_sc0036638.1_g000001
rosa_samantha Rh2CG505300 Rh2CG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 100
AcoI YGGCCR 2 cut(s) 37, 97
AcsI RAATTY 1 cut(s) 215
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 37, 85, 97, 151
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 152, 176
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 2 cut(s) 205, 228
BcgI CGANNNNNNTGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 152, 176
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 88, 220
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 88, 220
BseGI GGATG 3 cut(s) 69, 197, 239
BseNI ACTGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 133
BshFI GGCC 4 cut(s) 39, 87, 99, 153
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 189, 251
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 189, 251
BsnI GGCC 4 cut(s) 39, 87, 99, 153
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 69, 133
BspACI CCGC 2 cut(s) 45, 100
BspANI GGCC 4 cut(s) 39, 87, 99, 153
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 88, 220
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 121, 161
BstC8I GCNNGC 1 cut(s) 37
BstF5I GGATG 3 cut(s) 69, 197, 239
BstHHI GCGC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 80
BsuRI GGCC 4 cut(s) 39, 87, 99, 153
BtsCI GGATG 3 cut(s) 69, 197, 239
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 117, 240
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 152, 176
CviJI RGCY 5 cut(s) 39, 67, 87, 99, 153
CviKI_1 RGCY 5 cut(s) 39, 67, 87, 99, 153
EaeI YGGCCR 2 cut(s) 37, 97
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 3 cut(s) 143, 145, 150
FaqI GGGAC 2 cut(s) 189, 251
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 3 cut(s) 56, 184, 246
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 4 cut(s) 39, 87, 99, 153
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 121, 161
HpyCH4V TGCA 1 cut(s) 257
HspAI GCGC 1 cut(s) 115
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
LpnPI CCDG 8 cut(s) 32, 49, 53, 168, 195, 207, 231, 234
LweI GCATC 1 cut(s) 111
MhlI GDGCHC 2 cut(s) 69, 133
MluCI AATT 1 cut(s) 215
MnlI CCTC 3 cut(s) 19, 77, 105
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NaeI GCCGGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 143
NgoMIV GCCGGC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 177
PceI AGGCCT 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 152, 176
PstI CTGCAG 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 152, 176
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 69, 133
SetI ASST 3 cut(s) 11, 69, 272
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 215
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 2 cut(s) 45, 100
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 121, 161
TasI AATT 1 cut(s) 215
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 124, 247
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 124, 247
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.