FvH4_6g41370

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018464
Physical Location & Seq
Reverse (-)
32531246 .. 32532244
999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41370.t1

Sequence Viewer

Length: 663 bp
ATGAGAGAAGCAGCGATCAACATCCCCACAGCTGCCATGAGACCTTCCACCAACACCAAGGACTCCACCAGCTCACCAACTTGCTTAAAACTTCTTTTATACCTGCTGATATGCATGACAATCGTGCTTTTCATACTGGTTCCAATAGTATATACGAATTTGCCTGATCAAACCCTAGAGTTTCAGATCAACTCTCTTTCAGTCTCTCCCTTTCTAGTCTACTCCTCCTCCATCACTGCCAATTGGAACATCACCTTACTTGCTAGAAATCCTTATAAGGACAAAATCGTCTACTATGACGCCATTGAAGTTTCGGTTTTCTATCACAAGCTGTTTCTAACTTCGTCGCATATAGCTATGAATGGATCCTTGTATCAAAGTCCCAAGAATGAGTCAATGCTGCAGGTGAACCTTGCAATCTCATCAGTGTATATGGGCAATTGGATGGAGGCGGCGGCCATGCTGGAGGAGTGGAGGAACAGAGGTGTAGGGTTTGGTGTTAGAGCAGAGGCTATTGTCAGGTTAGGCGACAGCGAAAAGAATTTAAAGAGGAAGCTGGTAAGGGCCAACTGTGATTATTTGAAGGTTGAGATCTCACCGAATCAAACGGCGGGAGTCTTGTTGGGTGGATCAAGAAACTGTGATGTCAAAGAAGTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

221

Amino Acids

24.65

Weight (kDa)

8.61

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018464)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41370
rosa_chinensis RchiOBHm_Chr2g0156911
rosa_laevigata RLG00000020952
rosa_multiflora Rmu_ssc0000408.1_g000003
rosa_roxburghii Rroxscaffold_2G00092590
rosa_rugosa Rorug02G0457100
rosa_samantha Rh2AG522800 Rh2BG536100 Rh2CG507700 Rh2DG545100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AarI CACCTGC 1 cut(s) 394
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 2 cut(s) 111, 394
AccI GTMKAC 2 cut(s) 219, 291
AciI CCGC 3 cut(s) 452, 455, 611
AclWI GGATC 3 cut(s) 360, 373, 637
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 157, 541
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 659
AgsI TTSAA 2 cut(s) 308, 583
AluBI AGCT 5 cut(s) 32, 72, 331, 356, 556
AluI AGCT 5 cut(s) 32, 72, 331, 356, 556
Alw26I GTCTC 2 cut(s) 34, 208
AlwI GGATC 3 cut(s) 360, 373, 637
AoxI GGCC 2 cut(s) 456, 564
ApeKI GCWGC 3 cut(s) 11, 32, 400
ApoI RAATTY 2 cut(s) 157, 541
AspS9I GGNCC 1 cut(s) 564
AsuHPI GGTGA 4 cut(s) 66, 244, 418, 588
BamHI GGATCC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 19, 23, 387
BccI CCATC 2 cut(s) 239, 439
BceAI ACGGC 1 cut(s) 624
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 34, 208
BfaI CTAG 4 cut(s) 176, 215, 264, 661
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 2 cut(s) 111, 394
BglII AGATCT 1 cut(s) 591
BisI GCNGC 5 cut(s) 12, 33, 401, 453, 456
BlsI GCNGC 5 cut(s) 13, 34, 402, 454, 457
BmgT120I GGNCC 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 141, 367
BpmI CTGGAG 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 21, 450
BseJI GATNNNNATC 1 cut(s) 20
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 3 cut(s) 214, 217, 482
BseXI GCAGC 3 cut(s) 19, 23, 387
BshFI GGCC 2 cut(s) 458, 566
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 34, 208
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 458, 566
Bso31I GGTCTC 1 cut(s) 34
Bsp143I GATC 6 cut(s) 15, 166, 186, 365, 591, 629
BspACI CCGC 3 cut(s) 452, 455, 611
BspANI GGCC 2 cut(s) 458, 566
BspLI GGNNCC 2 cut(s) 141, 367
BspMAI CTGCAG 1 cut(s) 405
BspMI ACCTGC 2 cut(s) 111, 394
BspPI GGATC 3 cut(s) 360, 373, 637
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 15, 166, 186, 365, 591, 629
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 572, 641
BstACI GRCGYC 1 cut(s) 300
BstF5I GGATG 2 cut(s) 21, 450
BstKTI GATC 6 cut(s) 18, 169, 189, 368, 594, 632
BstMAI GTCTC 2 cut(s) 34, 208
BstMBI GATC 6 cut(s) 15, 166, 186, 365, 591, 629
BstSFI CTRYAG 1 cut(s) 401
BstV1I GCAGC 3 cut(s) 19, 23, 387
BstX2I RGATCY 2 cut(s) 365, 591
BstYI RGATCY 2 cut(s) 365, 591
BsuRI GGCC 2 cut(s) 458, 566
BtsCI GGATG 2 cut(s) 21, 450
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 234, 432
BveI ACCTGC 2 cut(s) 111, 394
Cfr13I GGNCC 1 cut(s) 564
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 658
CviAII CATG 3 cut(s) 37, 115, 460
CviJI RGCY 8 cut(s) 32, 72, 331, 356, 458, 512, 556, 566
CviKI_1 RGCY 8 cut(s) 32, 72, 331, 356, 458, 512, 556, 566
CviQI GTAC 1 cut(s) 658
DpnI GATC 6 cut(s) 17, 168, 188, 367, 593, 631
DpnII GATC 6 cut(s) 15, 166, 186, 365, 591, 629
DraI TTTAAA 1 cut(s) 546
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 40, 118, 463
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 36, 114, 459
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 2 cut(s) 219, 291
Fnu4HI GCNGC 5 cut(s) 12, 33, 401, 453, 456
FokI GGATG 2 cut(s) 8, 457
Fsp4HI GCNGC 5 cut(s) 12, 33, 401, 453, 456
FspBI CTAG 4 cut(s) 176, 215, 264, 661
GluI GCNGC 5 cut(s) 12, 33, 401, 453, 456
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 458, 566
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 3 cut(s) 40, 118, 463
HinfI GANTC 4 cut(s) 62, 392, 601, 615
HphI GGTGA 4 cut(s) 66, 244, 418, 588
Hpy166II GTNNAC 4 cut(s) 220, 292, 409, 658
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 633
Hpy8I GTNNAC 4 cut(s) 220, 292, 409, 658
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 54, 577
HpyCH4III ACNGT 2 cut(s) 572, 641
HpyCH4V TGCA 3 cut(s) 114, 403, 416
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 3 cut(s) 40, 118, 463
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 6 cut(s) 15, 166, 186, 365, 591, 629
LpnPI CCDG 8 cut(s) 82, 116, 122, 177, 389, 449, 505, 542
Lsp1109I GCAGC 3 cut(s) 19, 23, 387
MaeI CTAG 4 cut(s) 176, 215, 264, 661
MalI GATC 6 cut(s) 17, 168, 188, 367, 593, 631
MboI GATC 6 cut(s) 15, 166, 186, 365, 591, 629
MfeI CAATTG 2 cut(s) 241, 439
MflI RGATCY 2 cut(s) 365, 591
MluCI AATT 4 cut(s) 157, 241, 439, 541
MlyI GAGTC 3 cut(s) 56, 401, 624
MnlI CCTC 8 cut(s) 235, 238, 442, 460, 468, 476, 502, 543
Mph1103I ATGCAT 1 cut(s) 116
MseI TTAA 2 cut(s) 86, 545
MspA1I CMGCKG 1 cut(s) 32
MunI CAATTG 2 cut(s) 241, 439
NdeII GATC 6 cut(s) 15, 166, 186, 365, 591, 629
NlaIII CATG 3 cut(s) 40, 118, 463
NlaIV GGNNCC 2 cut(s) 141, 367
NsiI ATGCAT 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 5 cut(s) 13, 34, 402, 454, 457
PleI GAGTC 3 cut(s) 56, 400, 623
PpsI GAGTC 3 cut(s) 56, 400, 623
PsiI TTATAA 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 141, 367
PspPI GGNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 2 cut(s) 365, 591
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 86, 545
SatI GCNGC 5 cut(s) 12, 33, 401, 453, 456
Sau3AI GATC 6 cut(s) 15, 166, 186, 365, 591, 629
Sau96I GGNCC 1 cut(s) 564
SchI GAGTC 3 cut(s) 56, 401, 624
SfcI CTRYAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 157, 241, 439, 541
SsiI CCGC 3 cut(s) 452, 455, 611
SspMI CTAG 4 cut(s) 176, 215, 264, 661
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 572, 641
TasI AATT 4 cut(s) 157, 241, 439, 541
TatI WGTACW 1 cut(s) 657
TauI GCSGC 2 cut(s) 455, 458
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 86, 545
Tru9I TTAA 2 cut(s) 86, 545
TscAI CASTG 2 cut(s) 241, 432
TseI GCWGC 3 cut(s) 11, 32, 400
TspDTI ATGAA 2 cut(s) 121, 374
TspRI CASTG 2 cut(s) 241, 432
XapI RAATTY 2 cut(s) 157, 541
XmiI GTMKAC 2 cut(s) 219, 291
XspI CTAG 4 cut(s) 176, 215, 264, 661
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.