Rmu_ssc0000408.1_g000003

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000408.1
OG0018464
Physical Location & Seq
Reverse (-)
10816 .. 11487
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000408.1_g000003.1.cds

Sequence Viewer

Length: 672 bp
atgagagaagcagcgaacaacacccccacagccgccatgagacccgccaccaacaccaaggactccgccagctcaccaactcttagagattgcgtagtacttctttttttactgctggcaatcatggcaatcgtgcttatgatactggttccaatagtacttatgaatttgcctgatcaaaccctagagtttcagatcaactctctttcagtctctccgtttctagtcttctcctccttcatcactgccaattggaacatcactttacttgctagaaacccttacaaggacaagatcgtctactatgacgccattgaagtttcggttttctatcaaaagctgtttctaacttcttcgaagatagctttaaaggaatccttgtatcaaagtcccaagaacgaatcaatgctgcaggcgaatcttgcaatctcctcagtgtatgttggggattggatggaggcagcggccatgctcgaggagtggagaaacaaagttgtggggttcggcgtcagagcagatgctcttgtcaggttaggcgacagtgacaaggatttggagaggaagctggtgagggccaactgtgattatttgaaggttgagatttcaccgaatcaaacggcgggagtcttgttgggtggatcaagaaactgtgatgtcatagaagtgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

223

Amino Acids

24.82

Weight (kDa)

5.3

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018464)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41370
rosa_chinensis RchiOBHm_Chr2g0156911
rosa_laevigata RLG00000020952
rosa_multiflora Rmu_ssc0000408.1_g000003
rosa_roxburghii Rroxscaffold_2G00092590
rosa_rugosa Rorug02G0457100
rosa_samantha Rh2AG522800 Rh2BG536100 Rh2CG507700 Rh2DG545100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 300
AciI CCGC 5 cut(s) 33, 45, 66, 464, 620
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 166
AcyI GRCGYC 2 cut(s) 309, 507
AfaI GTAC 3 cut(s) 99, 159, 668
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 2 cut(s) 317, 592
AluBI AGCT 4 cut(s) 72, 340, 365, 565
AluI AGCT 4 cut(s) 72, 340, 365, 565
Alw26I GTCTC 2 cut(s) 34, 217
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 2 cut(s) 465, 573
ApeKI GCWGC 3 cut(s) 11, 409, 461
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 66, 580, 597
AsuII TTCGAA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 23, 396, 473
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 633
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 34, 217
BfaI CTAG 4 cut(s) 185, 224, 273, 670
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 5 cut(s) 12, 33, 410, 462, 465
BlsI GCNGC 5 cut(s) 13, 34, 411, 463, 466
BmcAI AGTACT 2 cut(s) 99, 159
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 573
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 356
BsaHI GRCGYC 2 cut(s) 309, 507
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 3 cut(s) 223, 421, 491
BseXI GCAGC 3 cut(s) 23, 396, 473
BshFI GGCC 2 cut(s) 467, 575
BsiHKCI CYCGRG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 34, 217
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 467, 575
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 356
Bsp143I GATC 4 cut(s) 175, 195, 294, 638
BspACI CCGC 5 cut(s) 33, 45, 66, 464, 620
BspANI GGCC 2 cut(s) 467, 575
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 414
BspPI GGATC 1 cut(s) 646
BspT104I TTCGAA 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 175, 195, 294, 638
BssNI GRCGYC 2 cut(s) 309, 507
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 542, 581, 650
BstACI GRCGYC 2 cut(s) 309, 507
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 70, 117, 414
BstDEI CTNAG 2 cut(s) 83, 433
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 4 cut(s) 178, 198, 297, 641
BstMAI GTCTC 2 cut(s) 34, 217
BstMBI GATC 4 cut(s) 175, 195, 294, 638
BstMWI GCNNNNNNNGC 2 cut(s) 125, 422
BstSFI CTRYAG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 23, 396, 473
BstV2I GAAGAC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 467, 575
BtsCI GGATG 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 243, 441, 547
Cac8I GCNNGC 3 cut(s) 70, 117, 414
Cfr13I GGNCC 1 cut(s) 573
CseI GACGC 2 cut(s) 317, 496
Csp6I GTAC 3 cut(s) 98, 158, 667
CviAII CATG 3 cut(s) 37, 124, 469
CviJI RGCY 7 cut(s) 32, 72, 340, 365, 467, 565, 575
CviKI_1 RGCY 7 cut(s) 32, 72, 340, 365, 467, 565, 575
CviQI GTAC 3 cut(s) 98, 158, 667
DdeI CTNAG 2 cut(s) 83, 433
DpnI GATC 4 cut(s) 177, 197, 296, 640
DpnII GATC 4 cut(s) 175, 195, 294, 638
DraI TTTAAA 1 cut(s) 369
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 465
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 40, 127, 472
FaiI YATR 8 cut(s) 38, 125, 140, 164, 306, 441, 470, 659
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 375
FatI CATG 3 cut(s) 36, 123, 468
FauI CCCGC 2 cut(s) 52, 613
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 12, 33, 410, 462, 465
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 5 cut(s) 12, 33, 410, 462, 465
FspBI CTAG 4 cut(s) 185, 224, 273, 670
GluI GCNGC 5 cut(s) 12, 33, 410, 462, 465
HaeIII GGCC 2 cut(s) 467, 575
HgaI GACGC 2 cut(s) 317, 496
Hin1I GRCGYC 2 cut(s) 309, 507
Hin1II CATG 3 cut(s) 40, 127, 472
HinfI GANTC 6 cut(s) 62, 374, 401, 418, 610, 624
HphI GGTGA 3 cut(s) 66, 580, 597
Hpy166II GTNNAC 2 cut(s) 301, 667
Hpy188I TCNGA 2 cut(s) 195, 512
Hpy188III TCNNGA 1 cut(s) 642
Hpy8I GTNNAC 2 cut(s) 301, 667
HpyAV CCTTC 2 cut(s) 247, 586
HpyCH4III ACNGT 3 cut(s) 542, 581, 650
HpyCH4V TGCA 2 cut(s) 412, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 422
HpyF3I CTNAG 2 cut(s) 83, 433
Hsp92I GRCGYC 2 cut(s) 309, 507
Hsp92II CATG 3 cut(s) 40, 127, 472
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 195, 294, 638
LpnPI CCDG 7 cut(s) 82, 101, 131, 186, 398, 514, 551
Lsp1109I GCAGC 3 cut(s) 23, 396, 473
LweI GCATC 1 cut(s) 508
MaeI CTAG 4 cut(s) 185, 224, 273, 670
MaeIII GTNAC 1 cut(s) 542
MalI GATC 4 cut(s) 177, 197, 296, 640
MboI GATC 4 cut(s) 175, 195, 294, 638
MboII GAAGA 3 cut(s) 220, 345, 370
MfeI CAATTG 1 cut(s) 250
MluCI AATT 2 cut(s) 166, 250
MlyI GAGTC 2 cut(s) 56, 633
MnlI CCTC 6 cut(s) 244, 442, 451, 469, 552, 564
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 464
MunI CAATTG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 125, 422
NdeII GATC 4 cut(s) 175, 195, 294, 638
NlaIII CATG 3 cut(s) 40, 127, 472
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 542
NspV TTCGAA 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 473
PfeI GAWTC 4 cut(s) 374, 401, 418, 610
PkrI GCNGC 5 cut(s) 13, 34, 411, 463, 466
PleI GAGTC 2 cut(s) 56, 632
PpsI GAGTC 2 cut(s) 56, 632
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 573
PspXI VCTCGAGB 1 cut(s) 473
PstI CTGCAG 1 cut(s) 414
RsaI GTAC 3 cut(s) 99, 159, 668
RsaNI GTAC 3 cut(s) 98, 158, 667
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 5 cut(s) 12, 33, 410, 462, 465
Sau3AI GATC 4 cut(s) 175, 195, 294, 638
Sau96I GGNCC 1 cut(s) 573
ScaI AGTACT 2 cut(s) 99, 159
SchI GAGTC 2 cut(s) 56, 633
SetI ASST 6 cut(s) 74, 342, 367, 533, 567, 597
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 410
Sfr274I CTCGAG 1 cut(s) 473
SfuI TTCGAA 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 2 cut(s) 166, 250
SsiI CCGC 5 cut(s) 33, 45, 66, 464, 620
SspMI CTAG 4 cut(s) 185, 224, 273, 670
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 542, 581, 650
TaqI TCGA 2 cut(s) 356, 474
TasI AATT 2 cut(s) 166, 250
TatI WGTACW 3 cut(s) 97, 157, 666
TauI GCSGC 2 cut(s) 35, 467
TfiI GAWTC 4 cut(s) 374, 401, 418, 610
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 3 cut(s) 250, 441, 547
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 3 cut(s) 11, 409, 461
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 2 cut(s) 179, 229
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 3 cut(s) 250, 441, 547
XapI RAATTY 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 4 cut(s) 185, 224, 273, 670
ZrmI AGTACT 2 cut(s) 99, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.