Rroxscaffold_2G00092590

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018464
Physical Location & Seq
Forward (+)
14145875 .. 14153668
7794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092590.1

Sequence Viewer

Length: 636 bp
ATGGCAATCGTACTTATGATACTGGTTCCAATAGTACTTATGAATTTGCCTGATGAAACCCTAGAGTTTCAGATCAACTCTCTTTCAGTCTCTCCGTTTCTAGTCTTCTCCTCCTTCATCACTGCCAATTGGAACATCACTTTACTTGCTAGAAACCCTTACAAGGACAAGATCGTCTACTATGACGCCATTGAAGTTTCGGTTTTCTATCACAAGCTGTTTCTAACTTCGTCGAAGATAGCTTTAAAGGAATCCTTGTATCAAAGTCCCAAGAACGAATCAATGCTGCAGGCGAATCTCGCAATCTCCTCAGTGTATGTTGGGGATTGGATGGAGGCAGCGGCCATGCTCGAGGAGTGGAGAAACAAAGTTGTGGGGTTCGGCGTCAGAGCAGATGCTATTGTCAGGTTAGGCGACAGTGACAAGAATTTGGAGAGGAAGCTGGTGAGGGCCAACTGTGATTATTTGAAGATTGAGATTTCACCGAATCAAACGGCGGGAGACTTGTTGGGTGGATCAAGAAACTGTGATGTCATAGAAATTAGGGTTAGTTTTGGAGCGAAAAGGGTACCACGAAAAACTATTAAATTTACGAGCGTAGTTACTTCCAAGAAATTAGGGATTTTACGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

9.16

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018464)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41370
rosa_chinensis RchiOBHm_Chr2g0156911
rosa_laevigata RLG00000020952
rosa_multiflora Rmu_ssc0000408.1_g000003
rosa_roxburghii Rroxscaffold_2G00092590
rosa_rugosa Rorug02G0457100
rosa_samantha Rh2AG522800 Rh2BG536100 Rh2CG507700 Rh2DG545100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 568
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 341, 497
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 3 cut(s) 43, 427, 587
AcyI GRCGYC 2 cut(s) 186, 384
AfaI GTAC 3 cut(s) 12, 36, 570
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 194, 469
AluBI AGCT 3 cut(s) 217, 242, 442
AluI AGCT 3 cut(s) 217, 242, 442
Alw26I GTCTC 2 cut(s) 94, 495
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 342, 450
ApeKI GCWGC 2 cut(s) 286, 338
ApoI RAATTY 3 cut(s) 43, 427, 587
Asp718I GGTACC 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 457, 474
AvaI CYCGRG 1 cut(s) 350
BanI GGYRCC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 273, 350
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 94, 495
BfaI CTAG 3 cut(s) 62, 101, 150
BfmI CTRYAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 287, 339, 342
BlsI GCNGC 3 cut(s) 288, 340, 343
BmcAI AGTACT 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 27, 570
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 97
BsaHI GRCGYC 2 cut(s) 186, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 3 cut(s) 100, 298, 368
BseXI GCAGC 2 cut(s) 273, 350
BshFI GGCC 2 cut(s) 344, 452
BshNI GGYRCC 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 94, 495
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 2 cut(s) 344, 452
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 3 cut(s) 72, 171, 515
BspACI CCGC 2 cut(s) 341, 497
BspANI GGCC 2 cut(s) 344, 452
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 27, 570
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 568
BsrI ACTGG 1 cut(s) 27
BssMI GATC 3 cut(s) 72, 171, 515
BssNI GRCGYC 2 cut(s) 186, 384
Bst4CI ACNGT 3 cut(s) 419, 458, 527
BstACI GRCGYC 2 cut(s) 186, 384
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 3 cut(s) 75, 174, 518
BstMAI GTCTC 2 cut(s) 94, 495
BstMBI GATC 3 cut(s) 72, 171, 515
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 273, 350
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 344, 452
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 120, 318, 424
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 2 cut(s) 194, 373
Csp6I GTAC 3 cut(s) 11, 35, 569
CviAII CATG 1 cut(s) 346
CviJI RGCY 5 cut(s) 217, 242, 344, 442, 452
CviKI_1 RGCY 5 cut(s) 217, 242, 344, 442, 452
CviQI GTAC 3 cut(s) 11, 35, 569
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 74, 173, 517
DpnII GATC 3 cut(s) 72, 171, 515
DraI TTTAAA 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 350
FaeI CATG 1 cut(s) 349
FaiI YATR 7 cut(s) 17, 41, 183, 318, 347, 536, 634
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 490
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 287, 339, 342
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 287, 339, 342
FspBI CTAG 3 cut(s) 62, 101, 150
GluI GCNGC 3 cut(s) 287, 339, 342
HaeIII GGCC 2 cut(s) 344, 452
HgaI GACGC 2 cut(s) 194, 373
Hin1I GRCGYC 2 cut(s) 186, 384
Hin1II CATG 1 cut(s) 349
HinfI GANTC 4 cut(s) 251, 278, 295, 487
HphI GGTGA 2 cut(s) 457, 474
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 72, 389
Hpy188III TCNNGA 1 cut(s) 519
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 419, 458, 527
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 310
Hsp92I GRCGYC 2 cut(s) 186, 384
Hsp92II CATG 1 cut(s) 349
KpnI GGTACC 1 cut(s) 572
Kzo9I GATC 3 cut(s) 72, 171, 515
LmnI GCTCC 1 cut(s) 557
LpnPI CCDG 5 cut(s) 8, 63, 275, 391, 428
Lsp1109I GCAGC 2 cut(s) 273, 350
LweI GCATC 1 cut(s) 385
MaeI CTAG 3 cut(s) 62, 101, 150
MaeIII GTNAC 2 cut(s) 419, 601
MalI GATC 3 cut(s) 74, 173, 517
MboI GATC 3 cut(s) 72, 171, 515
MboII GAAGA 3 cut(s) 97, 247, 481
MfeI CAATTG 1 cut(s) 127
MluCI AATT 6 cut(s) 43, 127, 427, 540, 587, 614
MnlI CCTC 6 cut(s) 121, 319, 328, 346, 429, 441
MseI TTAA 2 cut(s) 245, 585
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 3 cut(s) 72, 171, 515
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 2 cut(s) 27, 570
NmuCI GTSAC 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 350
PfeI GAWTC 4 cut(s) 251, 278, 295, 487
PkrI GCNGC 3 cut(s) 288, 340, 343
PspN4I GGNNCC 2 cut(s) 27, 570
PspPI GGNCC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 291
RsaI GTAC 3 cut(s) 12, 36, 570
RsaNI GTAC 3 cut(s) 11, 35, 569
SaqAI TTAA 2 cut(s) 245, 585
SatI GCNGC 3 cut(s) 287, 339, 342
Sau3AI GATC 3 cut(s) 72, 171, 515
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 36
SetI ASST 4 cut(s) 219, 244, 410, 444
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 287
Sfr274I CTCGAG 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 6 cut(s) 43, 127, 427, 540, 587, 614
SsiI CCGC 2 cut(s) 341, 497
SspMI CTAG 3 cut(s) 62, 101, 150
TaaI ACNGT 3 cut(s) 419, 458, 527
TaqI TCGA 2 cut(s) 233, 351
TasI AATT 6 cut(s) 43, 127, 427, 540, 587, 614
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 4 cut(s) 251, 278, 295, 487
Tru1I TTAA 2 cut(s) 245, 585
Tru9I TTAA 2 cut(s) 245, 585
TscAI CASTG 3 cut(s) 127, 318, 424
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 2 cut(s) 286, 338
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 56, 69, 106
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 127, 318, 424
XapI RAATTY 3 cut(s) 43, 427, 587
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 62, 101, 150
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.