FvH4_6g44430

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0019255
Physical Location & Seq
Forward (+)
34219521 .. 34219962
442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44430.t1

Sequence Viewer

Length: 231 bp
ATGCAAGGAAGCAAGGACCAAGCTCAAAAAGCCAAGTATTCCATCCTCGCATCTCCCAAGCCAATTATAGCAAAGTTATCTGCAGGATTCAGCACTCCGAATAATGAAGCCGTTGCTGCTGTCAACAACACTACTACTAATACTACTCCTACTACAGATCACAGCAGGCTCAAACAGGCTGAGGAGTCCTTCCGCACTGTCATGTACTTGAGCTGTTGGGGTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

77

Amino Acids

8.22

Weight (kDa)

9.3

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 2 - 75 3.5e-12 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019255)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44430
prunus_persica Prupe.3G228800_v2.0.a1
rosa_roxburghii Rroxscaffold_2G00088850
rosa_rugosa Rorug02G0489300
rosa_samantha Rh2AG555500 Rh2BG568700 Rh2CG539400 Rh2DG578300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AfaI GTAC 1 cut(s) 206
AluBI AGCT 2 cut(s) 23, 213
AluI AGCT 2 cut(s) 23, 213
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 16, 221
AvaII GGWCC 2 cut(s) 16, 221
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 95
BfmI CTRYAG 2 cut(s) 81, 153
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 2 cut(s) 16, 221
BmgT120I GGNCC 2 cut(s) 16, 221
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 229
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 85
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 29, 116
BstSFI CTRYAG 2 cut(s) 81, 153
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 16, 221
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 23, 32, 61, 110, 169, 179, 213
CviKI_1 RGCY 7 cut(s) 23, 32, 61, 110, 169, 179, 213
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 16, 221
EcoO109I RGGNCCY 1 cut(s) 221
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 68, 203
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 87, 185
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 4, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 116
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 69, 151, 161
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 59
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MluCI AATT 2 cut(s) 63, 226
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 2 cut(s) 56, 175
MseI TTAA 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 29, 116
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 16, 221
PspPPI RGGWCCY 1 cut(s) 221
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 16, 221
SchI GAGTC 1 cut(s) 194
SetI ASST 2 cut(s) 25, 215
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 2 cut(s) 81, 153
SinI GGWCC 2 cut(s) 16, 221
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 2 cut(s) 63, 226
SsiI CCGC 1 cut(s) 193
TaaI ACNGT 1 cut(s) 199
TasI AATT 2 cut(s) 63, 226
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 16, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.