Rorug02G0489300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019255
Physical Location & Seq
Forward (+)
61852684 .. 61853383
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0489300.1

Sequence Viewer

Length: 552 bp
ATGGATCTGCAGAGTTTCAGCTCATTTCAAGTTCATTTGGTCAGTCTGCCGCCCCTCCTTCCTTGTTTAGCTCGGTTTCTCCTAGCCGAAGTAGGAAAATGCCAAAATGCTTATTTTGGGTCCAAACATCTACGTCGGCCTCCTCCAAAGGGCAAGATTACTCACCCTAGTGACTATGCCGATCCTACAGTCGTCTTGCCTGATGGGTTTATCGGACGGACGACTAGGATCGGGAAGGTCATAGGATGGGCCCCACAAGTAGACGTGTTGGCCCATCCGGCCGTCGGGGGTTTTGTATCTCATTGTGGGTGGAATTCCATTCTCGAGAGTTTATGGTTTGGGGTGCCAATTGCCACGTGGCCTATGTACGCAGAACAACAAATGAATGCATTTGAAATGGTGAGAGAATGGGGATTGGCCGTGAAAATCAGTGTGGAGTATGGCAGTGTGTTTCATAGTACTGCCGAAGAGAGGCAACTGGTTTTGATTGCACAAGAGATAGAGAGAGGAATAAGGGAGGTGATGGAGCCTGATAGTATTGTAAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

6.59

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 71 - 143 3.9e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019255)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44430
prunus_persica Prupe.3G228800_v2.0.a1
rosa_roxburghii Rroxscaffold_2G00088850
rosa_rugosa Rorug02G0489300
rosa_samantha Rh2AG555500 Rh2BG568700 Rh2CG539400 Rh2DG578300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 261
AciI CCGC 1 cut(s) 50
AclWI GGATC 3 cut(s) 12, 176, 236
AcoI YGGCCR 2 cut(s) 279, 417
AcsI RAATTY 1 cut(s) 313
AcvI CACGTG 1 cut(s) 357
AfaI GTAC 2 cut(s) 368, 460
AfiI CCNNNNNNNGG 3 cut(s) 149, 284, 471
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 29, 395
AjiI CACGTC 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 2 cut(s) 21, 71
AluI AGCT 2 cut(s) 21, 71
AlwI GGATC 3 cut(s) 12, 176, 236
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 6 cut(s) 137, 249, 270, 279, 359, 417
ApaI GGGCCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 4 cut(s) 120, 249, 250, 271
AsuHPI GGTGA 3 cut(s) 155, 412, 532
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 253
BbrPI CACGTG 1 cut(s) 357
BccI CCATC 4 cut(s) 197, 240, 282, 517
BceAI ACGGC 2 cut(s) 266, 404
BfaI CTAG 3 cut(s) 83, 168, 225
BfmI CTRYAG 2 cut(s) 8, 186
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmcAI AGTACT 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 4 cut(s) 120, 249, 250, 271
BmiI GGNNCC 5 cut(s) 121, 251, 252, 345, 528
BsaAI YACGTR 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 284, 471
Bse1I ACTGG 1 cut(s) 483
BseGI GGATG 2 cut(s) 251, 274
BseLI CCNNNNNNNGG 3 cut(s) 149, 284, 471
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 253
BseX3I CGGCCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 6 cut(s) 139, 251, 272, 281, 361, 419
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 149, 284, 471
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 6 cut(s) 139, 251, 272, 281, 361, 419
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 4, 181, 228
BspACI CCGC 1 cut(s) 50
BspANI GGCC 6 cut(s) 139, 251, 272, 281, 361, 419
BspLI GGNNCC 5 cut(s) 121, 251, 252, 345, 528
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 3 cut(s) 12, 176, 236
BspT107I GGYRCC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 483
BssMI GATC 3 cut(s) 4, 181, 228
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 357
BstF5I GGATG 2 cut(s) 251, 274
BstKTI GATC 3 cut(s) 7, 184, 231
BstMBI GATC 3 cut(s) 4, 181, 228
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstSFI CTRYAG 2 cut(s) 8, 186
BstSLI GKGCMC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 6 cut(s) 139, 251, 272, 281, 361, 419
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 251, 274
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 436, 451
Cfr13I GGNCC 4 cut(s) 120, 249, 250, 271
Csp6I GTAC 2 cut(s) 367, 459
CviQI GTAC 2 cut(s) 367, 459
DpnI GATC 3 cut(s) 6, 183, 230
DpnII GATC 3 cut(s) 4, 181, 228
EaeI YGGCCR 2 cut(s) 279, 417
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
EclXI CGGCCG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 279
Eco72I CACGTG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 253
FaiI YATR 6 cut(s) 177, 242, 334, 365, 441, 456
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 2 cut(s) 258, 261
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 3 cut(s) 83, 168, 225
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 6 cut(s) 139, 251, 272, 281, 361, 419
HapII CCGG 1 cut(s) 278
HpaII CCGG 1 cut(s) 278
HphI GGTGA 3 cut(s) 155, 412, 532
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 3 cut(s) 232, 323, 325
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 138, 287
HpyAV CCTTC 2 cut(s) 68, 229
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 3 cut(s) 133, 264, 356
HpyCH4V TGCA 3 cut(s) 10, 389, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 3 cut(s) 133, 264, 356
Kzo9I GATC 3 cut(s) 4, 181, 228
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 4 cut(s) 213, 291, 464, 543
MaeI CTAG 3 cut(s) 83, 168, 225
MaeII ACGT 3 cut(s) 133, 264, 356
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 6, 183, 230
MboI GATC 3 cut(s) 4, 181, 228
MboII GAAGA 1 cut(s) 479
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 313, 348
MnlI CCTC 6 cut(s) 65, 150, 153, 465, 500, 511
Mph1103I ATGCAT 1 cut(s) 391
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 1 cut(s) 278
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 3 cut(s) 4, 181, 228
NlaIV GGNNCC 5 cut(s) 121, 251, 252, 345, 528
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 323
PctI GAATGC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 357
PmlI CACGTG 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 357
PspCI CACGTG 1 cut(s) 357
PspN4I GGNNCC 5 cut(s) 121, 251, 252, 345, 528
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 4 cut(s) 120, 249, 250, 271
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 368, 460
RsaNI GTAC 2 cut(s) 367, 459
RseI CAYNNNNRTG 1 cut(s) 168
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 3 cut(s) 4, 181, 228
Sau96I GGNCC 4 cut(s) 120, 249, 250, 271
ScaI AGTACT 1 cut(s) 460
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 23, 73, 136, 240, 267, 359, 522
SfcI CTRYAG 2 cut(s) 8, 186
SfiI GGCCNNNNNGGCC 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 313, 348
SsiI CCGC 1 cut(s) 50
SspMI CTAG 3 cut(s) 83, 168, 225
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 3 cut(s) 136, 267, 359
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 313, 348
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 52
TscAI CASTG 2 cut(s) 436, 451
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 23, 398, 443
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 2 cut(s) 436, 451
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 3 cut(s) 83, 168, 225
ZrmI AGTACT 1 cut(s) 460
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.