Rroxscaffold_2G00088850

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019255
Physical Location & Seq
Reverse (-)
10736332 .. 10736556
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088850.1

Sequence Viewer

Length: 225 bp
ATGCAAGGAAGCAAGGACCAAGCTCAAAAAGCCAAATACTCCATCCTCGCATCTCGCAAGCCAATTATAGCAAAGTCATCTGCAGGGTTTAGCAATTCCAATAATGAAGCCGTTGCTGCTGTCAACAACACTAGTACTACTGCAACTACAGATCACAGCAGGCTCAAACAAGCTGAAGAGTCCTTCCGCACTGTCATGTACTTGAGCTGTTGGGGTCCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

74

Amino Acids

8.0

Weight (kDa)

9.58

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 2 - 73 5.8e-14 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019255)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44430
prunus_persica Prupe.3G228800_v2.0.a1
rosa_roxburghii Rroxscaffold_2G00088850
rosa_rugosa Rorug02G0489300
rosa_samantha Rh2AG555500 Rh2BG568700 Rh2CG539400 Rh2DG578300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 136, 200
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 3 cut(s) 23, 173, 207
AluI AGCT 3 cut(s) 23, 173, 207
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 16, 215
AvaII GGWCC 2 cut(s) 16, 215
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 81, 147
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 136
Bme18I GGWCC 2 cut(s) 16, 215
BmgT120I GGNCC 2 cut(s) 16, 215
BmiI GGNNCC 2 cut(s) 216, 217
BmsI GCATC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 223
BseGI GGATG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 216, 217
BspMAI CTGCAG 1 cut(s) 85
BssMI GATC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 59, 161
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 29, 116
BstSFI CTRYAG 2 cut(s) 81, 147
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 59, 161
Cfr13I GGNCC 2 cut(s) 16, 215
Csp6I GTAC 2 cut(s) 135, 199
CviAII CATG 1 cut(s) 196
CviJI RGCY 7 cut(s) 23, 32, 61, 110, 163, 173, 207
CviKI_1 RGCY 7 cut(s) 23, 32, 61, 110, 163, 173, 207
CviQI GTAC 2 cut(s) 135, 199
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 16, 215
Eco57I CTGAAG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 215
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 68, 197
FaqI GGGAC 1 cut(s) 201
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 4, 83, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 116
Hsp92II CATG 1 cut(s) 199
KflI GGGWCCC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 69, 145
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 188
MluCI AATT 2 cut(s) 63, 94
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 29, 116
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 216, 217
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 216, 217
PspPI GGNCC 2 cut(s) 16, 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 2 cut(s) 136, 200
RsaNI GTAC 2 cut(s) 135, 199
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 16, 215
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 25, 175, 209
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 2 cut(s) 81, 147
SinI GGWCC 2 cut(s) 16, 215
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 2 cut(s) 63, 94
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 193
TasI AATT 2 cut(s) 63, 94
TatI WGTACW 2 cut(s) 134, 198
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 16, 215
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.