FvH4_6g45950

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
35159326 .. 35159703
378 bp
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UTR
Exon/CDS
Intron
FvH4_6g45950.t1

Sequence Viewer

Length: 378 bp
ATGGAGTCTTATAAACACTTGTTGAGCACAGAAGGATGTAGCAGCAGTGAGTCAGGGTGGACTACATATATTGCCTCTCCCATGGAAGAAGATGAACCTCAATGCAGTTATGATGATGTCGAATACAACTATAACAGCATTACAACTCGCACAAGCATTCAAGAGATTGACAAAGACGACAATGGCAGTGATGATTCAATGGCTTCGGATGCTTCTTCTGGCCCGAGCCACCATCAACACCACCTTGTATTGCCTTCTCGCAGTAAAGAAAGTAATCCAGGTACTGCTCGTTTCAGGCGTGATATCAAGCAATCAAGGAACAAGACCACAAGCAAACAAGAGAAGAAAAGGGGTGAAAAGAGTACCAAACGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.15

Weight (kDa)

6.2

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30580 AT5G38790
fragaria_vesca FvH4_6g45950
malus_domestica MD17G1069000.v1.1
prunus_persica Prupe.3G245600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164181
rosa_laevigata RLG00000021442
rosa_multiflora Rmu_sc0001427.1_g000017
rosa_roxburghii Rroxscaffold_2G00086740
rosa_rugosa Rorug02G0507000
rosa_samantha Rh2AG575300 Rh2BG585800 Rh2CG556600 Rh2DG595300
rosa_wichuraiana Rw2G047600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AfaI GTAC 2 cut(s) 283, 364
AgsI TTSAA 2 cut(s) 161, 198
AjnI CCWGG 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 279
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 41, 214
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 41, 214
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 41, 214
BtsI GCAGTG 2 cut(s) 52, 193
BtsIMutI CAGTG 2 cut(s) 52, 193
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 282, 363
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 203, 222, 228
CviKI_1 RGCY 3 cut(s) 203, 222, 228
CviQI GTAC 2 cut(s) 282, 363
Eco130I CCWWGG 1 cut(s) 81
Eco32I GATATC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 85
FaiI YATR 6 cut(s) 12, 67, 69, 83, 111, 132
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 2 cut(s) 48, 221
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 85
HinfI GANTC 3 cut(s) 5, 50, 194
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 26, 264
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 85
LpnPI CCDG 5 cut(s) 39, 204, 264, 280, 291
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 98, 101, 207, 355
MhlI GDGCHC 1 cut(s) 29
MlyI GAGTC 2 cut(s) 14, 59
MnlI CCTC 2 cut(s) 85, 108
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 81
NlaIII CATG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 295
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 2 cut(s) 13, 58
PpsI GAGTC 2 cut(s) 13, 58
PsiI TTATAA 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 283, 364
RsaNI GTAC 2 cut(s) 282, 363
SatI GCNGC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 14, 59
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 29
SetI ASST 3 cut(s) 100, 246, 283
SfaNI GCATC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 120
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 52, 193
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 2 cut(s) 52, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.