MD17G1069000.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016001
Physical Location & Seq
Reverse (-)
5581244 .. 5581706
463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1069000.v1.1.491

Sequence Viewer

Length: 381 bp
ATGATACATTTTCCCCTCAGAAATTTTTATGGCACAGAAGGATGCAGCAGCAGTGAATCAGGATGGACAACATACATTGCCTCTCCCATGCAAGAAGATGAGCCCGAATGCAGCAATATTGAAGACGTCGGTTACGAAAACCATCATCACATCGCATATCTCACCAGAAAAAAAGTTGGCAAAGATGACAATGAGAGTGATGATTCAATGGCTTCTGATGCTTCTTCTGGCCCAAGTCATCATCATGATCTCGTGCCTTCGCGCAGTAAAGACAGTAAAGGCACCGCTCGTTCCAAACGCGATAACAACAAGCAATCTAGGCACAAGAGCACAAGCAAACCAGAGAAGAAAACTGGCGAAAAGAGTACCAAAAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

7.83

Isoelectric Point (pI)

77.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30580 AT5G38790
fragaria_vesca FvH4_6g45950
malus_domestica MD17G1069000.v1.1
prunus_persica Prupe.3G245600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164181
rosa_laevigata RLG00000021442
rosa_multiflora Rmu_sc0001427.1_g000017
rosa_roxburghii Rroxscaffold_2G00086740
rosa_rugosa Rorug02G0507000
rosa_samantha Rh2AG575300 Rh2BG585800 Rh2CG556600 Rh2DG595300
rosa_wichuraiana Rw2G047600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 287
AccII CGCG 2 cut(s) 262, 300
AciI CCGC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 2 cut(s) 122, 207
Alw21I GWGCWC 1 cut(s) 332
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 3 cut(s) 45, 48, 111
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 57, 60, 123
BccI CCATC 2 cut(s) 57, 150
BfaI CTAG 1 cut(s) 318
BisI GCNGC 3 cut(s) 46, 49, 112
BlsI GCNGC 3 cut(s) 47, 50, 113
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 32, 208
BpiI GAAGAC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 75
BseGI GGATG 2 cut(s) 47, 68
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 57, 60, 123
Bsh1236I CGCG 2 cut(s) 262, 300
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 105, 332
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 2 cut(s) 262, 300
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 358
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 47, 68
BstFNI CGCG 2 cut(s) 262, 300
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 218, 319
BstUI CGCG 2 cut(s) 262, 300
BstV1I GCAGC 3 cut(s) 57, 60, 123
BstV2I GAAGAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 2 cut(s) 47, 68
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 366
CviAII CATG 2 cut(s) 88, 245
CviJI RGCY 3 cut(s) 103, 212, 231
CviKI_1 RGCY 3 cut(s) 103, 212, 231
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 91, 248
FaiI YATR 5 cut(s) 30, 73, 89, 157, 246
FatI CATG 2 cut(s) 87, 244
Fnu4HI GCNGC 3 cut(s) 46, 49, 112
FokI GGATG 2 cut(s) 54, 75
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 46, 49, 112
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 263
GluI GCNGC 3 cut(s) 46, 49, 112
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 91, 248
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 2 cut(s) 56, 203
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 20, 217
Hpy188III TCNNGA 2 cut(s) 60, 245
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 32, 267
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 45, 91, 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 319
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 91, 248
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 45, 178, 213, 339, 354
Lsp1109I GCAGC 3 cut(s) 57, 60, 123
LweI GCATC 2 cut(s) 32, 208
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 287
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 107, 134, 216, 358
MhlI GDGCHC 2 cut(s) 105, 332
MluCI AATT 1 cut(s) 22
MnlI CCTC 2 cut(s) 26, 91
MslI CAYNNNNRTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 2 cut(s) 262, 300
MwoI GCNNNNNNNGC 2 cut(s) 218, 319
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 91, 248
NlaIV GGNNCC 1 cut(s) 283
PagI TCATGA 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 56, 203
PkrI GCNGC 3 cut(s) 47, 50, 113
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 243
SatI GCNGC 3 cut(s) 46, 49, 112
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 2 cut(s) 105, 332
SetI ASST 1 cut(s) 129
SfaNI GCATC 2 cut(s) 32, 208
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 22
TfiI GAWTC 2 cut(s) 56, 203
TscAI CASTG 1 cut(s) 58
TseI GCWGC 3 cut(s) 45, 48, 111
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 318
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.