Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007049

Physical Location & Seq

Genomic Coordinates Reverse (-)

63862748 .. 63866212

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0507000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATATCGAGGAGGTCCCAGACTTAAGCGTTACAACACCGGATTACATTTCACAGGGTAGCTTAGGACAAAATCCGATTTCTGTAACTCCAGTAACTCCAATGAGGAAAGCATGGTCAAAAGTTACTCTAATTTGGGATATATATTCAGCAGGAACAACTATAATGGTGAAGATAATATTTTCAAGAGTAATTCGCTCTATACATGAAATTCTAAGTTGGAAATGGATATTTGTGGTATCATGCATTGCAGTCTCATTGGATCCTTTGTTCCTTTACATTCCGATCATCGAGGGAAACAAGTGCCTTGGAATCGACAGAAATTTGAGGATAGTAACTCTAGTTCTCCGATCACTTATAGATATCACTTTCATAACTCACATTATTGGTCTAATTTCTGATTGGAAATACTCTGACGGCCCCCAAAGGCACGTCTCCTACTTCGACTCTCACTTTGAGCCAGCATCAGGCTTGCTTTGGAAACTAAAGTTCCTTAAACAAGCCATAGCTAAGAGGATGCCATGGTTATCTGGTACTGTCATGATCCACTTTCTTGCTATTCTTCCTATCCCACAGGTGGCAATAGTATATGTCTTTGCTCTAATTGGAAGCTCTGAATTTTTTCTCAAAACTGCGATTATCAACTTATTTCTTGTCTTCCAATATTTCCCGAGGGTTTGCCAAATCTACCTATCAAGTAAACTCAACATGACCGGAACACGGGTTAAAGGTGGATTCAATTTGTTTTTGTATATCCTTGCAAGTCATGTTATTGCAGCCTACTGGTATCTTTTTGCAATTCAGAGAGAGATCTCATGTTGGCACCAGGCTTGTGAAAAAAGTGCAGGATGCCTAGCAACTTATGCTTGTGGTGGCAGTACTTCAATGAATATCACATTCCAAAATGAGCTTTGCCCAATATTTTCACCAAATACTACATTATTTGATTTTGGAATATTTCTTGATATTCTTCAGTCTGGTAATGCAGGATCAGTAAATTTCTTGACAAAATTCTGTTACTCTCTATGGTGGGGACTAAAAAATCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0004616 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008037 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0019822 GO:0019953 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045026 GO:0050896 GO:0051704 GO:0055114 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0080173 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

350

Amino Acids

39.65

Weight (kDa)

8.88

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02360 AT3G02360
fragaria_vesca	FvH4_6g45960 FvH4_6g45960
malus_domestica	MD09G1078700.v1.1 MD17G1068900.v1.1
prunus_persica	Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1
pyrus_communis	pycom09g00550 pycom17g06930
rosa_chinensis	RchiOBHm_Chr2g0164191
rosa_laevigata	RLG00000021443
rosa_multiflora	Rmu_sc0001427.1_g000016 Rmu_sc0025732.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086730
rosa_rugosa	Rorug02G0506700 Rorug02G0506800 Rorug02G0506900 Rorug02G0507000
rosa_samantha	Rh2AG575200 Rh2BG585900 Rh2CG556800 Rh2DG595500
rosa_wichuraiana	Rw2G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	822
AclWI	GGATC	4 cut(s)	257, 270, 538, 997
AcsI	RAATTY	5 cut(s)	210, 322, 617, 997, 1010
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	2 cut(s)	535, 880
AfiI	CCNNNNNNNGG	3 cut(s)	467, 577, 720
AflII	CTTAAG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	186, 739, 885
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	825
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	63, 509, 612, 910
AluI	AGCT	4 cut(s)	63, 509, 612, 910
Alw26I	GTCTC	2 cut(s)	259, 439
AlwI	GGATC	4 cut(s)	257, 270, 538, 997
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	776
ApoI	RAATTY	5 cut(s)	210, 322, 617, 997, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	16, 419
AsuHPI	GGTGA	2 cut(s)	181, 918
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	788
BceAI	ACGGC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	827
BcoDI	GTCTC	2 cut(s)	259, 439
BfaI	CTAG	2 cut(s)	341, 854
BfrI	CTTAAG	1 cut(s)	25
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	670
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	16, 419
BmiI	GGNNCC	4 cut(s)	18, 264, 421, 824
BmrFI	CCNGG	1 cut(s)	827
BmsI	GCATC	3 cut(s)	473, 507, 839
BpiI	GAAGAC	1 cut(s)	649
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	307, 521, 671
BsaWI	WCCGGW	2 cut(s)	40, 713
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 577, 720
Bse1I	ACTGG	2 cut(s)	92, 788
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	3 cut(s)	307, 521, 671
BseGI	GGATG	2 cut(s)	522, 854
BseLI	CCNNNNNNNGG	3 cut(s)	467, 577, 720
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	92, 788
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	788
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	41, 714
BslFI	GGGAC	2 cut(s)	2, 1047
BslI	CCNNNNNNNGG	3 cut(s)	467, 577, 720
BsmAI	GTCTC	2 cut(s)	259, 439
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	2 cut(s)	2, 1047
BsnI	GGCC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	670
Bsp143I	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
Bsp19I	CCATGG	1 cut(s)	521
BspANI	GGCC	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	18, 264, 421, 824
BspPI	GGATC	4 cut(s)	257, 270, 538, 997
BspT107I	GGYRCC	1 cut(s)	822
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	92, 788
BssECI	CCNNGG	3 cut(s)	307, 521, 671
BssMI	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
BssT1I	CCWWGG	2 cut(s)	307, 521
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	1 cut(s)	538
BstAFI	CTTAAG	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstC8I	GCNNGC	2 cut(s)	462, 473
BstDEI	CTNAG	3 cut(s)	64, 215, 510
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	522, 854
BstKTI	GATC	6 cut(s)	265, 288, 353, 546, 813, 992
BstMAI	GTCTC	2 cut(s)	259, 439
BstMBI	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
BstMWI	GCNNNNNNNGC	1 cut(s)	863
BstNI	CCWGG	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	825
BstV1I	GCAGC	1 cut(s)	788
BstV2I	GAAGAC	1 cut(s)	649
BstX2I	RGATCY	2 cut(s)	262, 810
BstYI	RGATCY	2 cut(s)	262, 810
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	522, 854
Cac8I	GCNNGC	2 cut(s)	462, 473
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	16, 419
Csp6I	GTAC	2 cut(s)	534, 879
CviAII	CATG	8 cut(s)	114, 206, 243, 522, 541, 709, 767, 816
CviQI	GTAC	2 cut(s)	534, 879
DdeI	CTNAG	3 cut(s)	64, 215, 510
DpnI	GATC	6 cut(s)	264, 287, 352, 545, 812, 991
DpnII	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
Eco130I	CCWWGG	2 cut(s)	307, 521
Eco32I	GATATC	2 cut(s)	7, 364
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	825
EcoRV	GATATC	2 cut(s)	7, 364
EcoT14I	CCWWGG	2 cut(s)	307, 521
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	2 cut(s)	307, 521
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	8 cut(s)	117, 209, 246, 525, 544, 712, 770, 819
FaqI	GGGAC	2 cut(s)	2, 1047
FatI	CATG	8 cut(s)	113, 205, 242, 521, 540, 708, 766, 815
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	2 cut(s)	529, 861
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	2 cut(s)	341, 854
GluI	GCNGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	2 cut(s)	41, 714
Hin1II	CATG	8 cut(s)	117, 209, 246, 525, 544, 712, 770, 819
HinfI	GANTC	3 cut(s)	312, 446, 735
HpaII	CCGG	2 cut(s)	41, 714
HphI	GGTGA	2 cut(s)	181, 918
Hpy166II	GTNNAC	1 cut(s)	701
Hpy188I	TCNGA	7 cut(s)	78, 285, 350, 400, 415, 616, 804
Hpy188III	TCNNGA	5 cut(s)	186, 541, 670, 962, 1003
Hpy8I	GTNNAC	1 cut(s)	701
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	7 cut(s)	246, 251, 761, 776, 797, 845, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	863
HpyF3I	CTNAG	3 cut(s)	64, 215, 510
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	8 cut(s)	117, 209, 246, 525, 544, 712, 770, 819
Kzo9I	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
Lsp1109I	GCAGC	1 cut(s)	788
LweI	GCATC	3 cut(s)	473, 507, 839
MaeI	CTAG	2 cut(s)	341, 854
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	6 cut(s)	31, 85, 94, 124, 334, 1016
MalI	GATC	6 cut(s)	264, 287, 352, 545, 812, 991
MboI	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
MboII	GAAGA	4 cut(s)	184, 554, 649, 962
MflI	RGATCY	2 cut(s)	262, 810
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	4, 7, 99, 286, 321, 507, 666
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	3 cut(s)	26, 495, 726
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	2 cut(s)	41, 714
MspR9I	CCNGG	1 cut(s)	827
MvaI	CCWGG	1 cut(s)	827
MwoI	GCNNNNNNNGC	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
NlaIII	CATG	8 cut(s)	117, 209, 246, 525, 544, 712, 770, 819
NlaIV	GGNNCC	4 cut(s)	18, 264, 421, 824
NsiI	ATGCAT	1 cut(s)	248
PagI	TCATGA	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	312, 735
PkrI	GCNGC	1 cut(s)	778
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	825
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	4 cut(s)	18, 264, 421, 824
PspPI	GGNCC	2 cut(s)	16, 419
PspPPI	RGGWCCY	1 cut(s)	16
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PsuI	RGATCY	2 cut(s)	262, 810
RsaI	GTAC	2 cut(s)	535, 880
RsaNI	GTAC	2 cut(s)	534, 879
SaqAI	TTAA	3 cut(s)	26, 495, 726
SatI	GCNGC	1 cut(s)	777
Sau3AI	GATC	6 cut(s)	262, 285, 350, 543, 810, 989
Sau96I	GGNCC	2 cut(s)	16, 419
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	827
SetI	ASST	9 cut(s)	18, 65, 435, 511, 579, 614, 693, 733, 912
SfaNI	GCATC	3 cut(s)	473, 507, 839
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SspI	AATATT	4 cut(s)	180, 665, 921, 957
SspMI	CTAG	2 cut(s)	341, 854
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	2 cut(s)	307, 521
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	4 cut(s)	9, 291, 315, 444
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	312, 735
Tru1I	TTAA	3 cut(s)	26, 495, 726
Tru9I	TTAA	3 cut(s)	26, 495, 726
TseI	GCWGC	1 cut(s)	776
TspDTI	ATGAA	3 cut(s)	222, 361, 902
Vha464I	CTTAAG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	5 cut(s)	210, 322, 617, 997, 1010
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	2 cut(s)	341, 854
ZrmI	AGTACT	1 cut(s)	880
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.