AT3G02360

Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
481776 .. 484152
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02360.2

Sequence Viewer

Length: 1461 bp
ATGGCTGTTCAACCTACAAGAATAGGTCTAGCTGGACTTGCTGTGATGGGTCAGAACCTAGCTCTCAACATTGCAGAGAAAGGCTTCCCAATCTCTGTTTACAACAGAACTACTTCCAAAGTTGATGAGACCGTCGAACGAGCCAAAAAGGAAGGCAATCTTCCTCTTTACGGCTTCCATGACCCCGAGTCTTTTGTCAAGTCCATTCAGAAGCCACGCGTTATTATCATGCTTGTTAAGGCTGGTTCTCCCGTTGACCAGACCATCAAGACCCTCTCTGCTTATTTGGAGAAAGGTGACTGTATTGTCGATGGTGGTAATGAATGGTATGAGAACACTGAGAGGAGAGAAAAAGCCGTGGCGGAGAACGGTTTCCTCTACCTTGGAATGGGAGTTTCTGGTGGTGAAGAAGGTGCTCGTAATGGCCCATCTATGATGCCTGGAGGCTCTTATGAAGCCTACAAGAATATCGAAGACATTGTTCTCAAGGTTGCTGCTCAGGTTAGGGATAGTGGTCCCTGTGTGACTTATATCGGTAAGGGCGGGTCTGGAAACTTTGTCAAAATGGTCCACAATGGGATCGAGTACGGTGATATGCAGCTGATTGCAGAAGCTTATGACGTCCTCAAGTCTGTTGGTAAATTATCGAATGAGGAGCTTCACAGTGTCTTCTCTGACTGGAACAAAGGTGAGCTTGAGAGTTTCTTGGTAGAGATCACAGCAGATATTTTCGGGATCAAGGACGATAAGGGAGATGGGCATTTGGTTGACAAGGTCTTGGACAAAACCGGCATGAAAGGCACAGGAAAGTGGACCGTGCAGCAAGCTGCTGAGCTATCTGTTCCTGCTCCCACCATTGAATCCTCTCTTGATGCGAGGTTCCTTAGCGGGCTTAAAGATGAACGTGTGCAAGCAGCTAAAGTCTTCAAGGCAGGTGGGTTTGGAGATATCTTGACCGATCAGAAAGTTGACAAGAAACAGCTAGTCGATGACGTGAGGAAGGCTCTTTACGCATCCAAAATCTGCAGCTACGCACAAGGCATGAACCTTATCCGTGCCAAGAGCATAGAAAAGGGGTGGGGATTGAAGCTAGGTGAGTTAGCTAGAATCTGGAAAGGAGGCTGCATCATCAGAGCAATCTTCCTAGACAGGATCAAGCAAGCTTATGACAGGAACGCAGAGCTAGCTAACCTCTTGGTGGATCCAGAGTTTGCGAAAGAGATAATCGAGAGACAGTCCGCGTGGAGAAGAGTCGTCTGCTTAGCTATCAACTCGGGTATCAGCACACCGGGTATGTCTGCGAGTCTAGCCTACTTTGATTCTTACAGGAGAGAGAGATTGCCGGCAAATCTAGTCCAAGCACAGAGAGACTACTTTGGTGCTCATACATATGAAAGGACTGATGTGGAAGGATCTTTCCACACCGAGTGGTTCAAGATTGCAAGACAATCTAAGATCTGA

Protein Analysis

486

Amino Acids

53.58

Weight (kDa)

7.02

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_2 PF03446 7 - 179 2.6e-46 NAD binding domain of 6-phosphogluconate dehydrogenase
6PGD PF00393 184 - 477 2.9e-129 6-phosphogluconate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 923
AasI GACNNNNNNGTC 1 cut(s) 305
AatII GACGTC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 923
AccII CGCG 2 cut(s) 219, 1241
AciI CCGC 4 cut(s) 362, 543, 888, 1239
AclWI GGATC 6 cut(s) 587, 743, 1160, 1196, 1209, 1420
AcyI GRCGYC 1 cut(s) 621
AdeI CACNNNGTG 1 cut(s) 1428
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 3 cut(s) 170, 388, 1198
AflIII ACRYGT 2 cut(s) 217, 904
AgsI TTSAA 5 cut(s) 11, 860, 928, 1087, 1435
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 994
AjnI CCWGG 1 cut(s) 439
Alw21I GWGCWC 2 cut(s) 418, 1384
Alw26I GTCTC 3 cut(s) 122, 1225, 1362
AlwI GGATC 6 cut(s) 587, 743, 1160, 1196, 1209, 1420
Ama87I CYCGRG 2 cut(s) 185, 1273
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 7 cut(s) 494, 598, 820, 827, 914, 1026, 1122
Asp700I GAANNNNTTC 3 cut(s) 83, 112, 371
AspS9I GGNCC 4 cut(s) 425, 515, 568, 813
AsuC2I CCSGG 1 cut(s) 1290
AsuHPI GGTGA 5 cut(s) 308, 416, 602, 701, 1106
AsuNHI GCTAGC 1 cut(s) 1183
AvaI CYCGRG 2 cut(s) 185, 1273
AvaII GGWCC 3 cut(s) 515, 568, 813
BaeI ACNNNNGTAYC 2 cut(s) 1261, 1294
BamHI GGATCC 1 cut(s) 1201
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BbsI GAAGAC 3 cut(s) 480, 661, 916
Bbv12I GWGCWC 2 cut(s) 418, 1384
BbvI GCAGC 7 cut(s) 481, 610, 814, 832, 926, 1038, 1109
BccI CCATC 5 cut(s) 40, 272, 305, 436, 749
BceAI ACGGC 2 cut(s) 187, 341
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 1 cut(s) 1290
BcoDI GTCTC 3 cut(s) 122, 1225, 1362
BfaI CTAG 9 cut(s) 29, 59, 983, 1091, 1104, 1145, 1184, 1307, 1352
BfmI CTRYAG 1 cut(s) 1024
BfuAI ACCTGC 1 cut(s) 923
BglII AGATCT 1 cut(s) 1455
BisI GCNGC 7 cut(s) 495, 599, 821, 828, 915, 1027, 1123
BlpI GCTNAGC 2 cut(s) 831, 1261
BlsI GCNGC 7 cut(s) 496, 600, 822, 829, 916, 1028, 1124
Bme1390I CCNGG 2 cut(s) 441, 1290
Bme18I GGWCC 3 cut(s) 515, 568, 813
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 185, 1273
BmgBI CACGTC 1 cut(s) 994
BmgT120I GGNCC 4 cut(s) 425, 515, 568, 813
BmiI GGNNCC 3 cut(s) 517, 881, 1203
BmrFI CCNGG 2 cut(s) 441, 1290
BmsI GCATC 4 cut(s) 426, 862, 1022, 1134
BmtI GCTAGC 1 cut(s) 1187
BpiI GAAGAC 3 cut(s) 480, 661, 916
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 1 cut(s) 462
Bpu10I CCTNAGC 2 cut(s) 498, 884
Bpu1102I GCTNAGC 2 cut(s) 831, 1261
BpuEI CTTGAG 3 cut(s) 470, 611, 716
BpuMI CCSGG 1 cut(s) 1290
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 357, 382
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 388, 1198
Bse118I RCCGGY 2 cut(s) 788, 1342
Bse1I ACTGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 357, 382
BseGI GGATG 1 cut(s) 1013
BseLI CCNNNNNNNGG 3 cut(s) 170, 388, 1198
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 330, 512, 822
BseNI ACTGG 1 cut(s) 683
BseRI GAGGAG 2 cut(s) 358, 668
BseXI GCAGC 7 cut(s) 481, 610, 814, 832, 926, 1038, 1109
BsgI GTGCAG 1 cut(s) 839
Bsh1236I CGCG 2 cut(s) 219, 1241
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 2 cut(s) 418, 1384
BsiHKCI CYCGRG 2 cut(s) 185, 1273
BsiSI CCGG 3 cut(s) 789, 1289, 1343
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 3 cut(s) 170, 388, 1198
BsmAI GTCTC 3 cut(s) 122, 1225, 1362
BsmFI GGGAC 1 cut(s) 501
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 2 cut(s) 185, 1273
Bsp1286I GDGCHC 2 cut(s) 418, 1384
Bsp143I GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
Bsp1720I GCTNAGC 2 cut(s) 831, 1261
BspACI CCGC 4 cut(s) 362, 543, 888, 1239
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 3 cut(s) 331, 511, 823
BspFNI CGCG 2 cut(s) 219, 1241
BspLI GGNNCC 3 cut(s) 517, 881, 1203
BspMAI CTGCAG 1 cut(s) 1028
BspMI ACCTGC 1 cut(s) 923
BspOI GCTAGC 1 cut(s) 1187
BspPI GGATC 6 cut(s) 587, 743, 1160, 1196, 1209, 1420
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 788, 1342
BsrI ACTGG 1 cut(s) 683
BssAI RCCGGY 2 cut(s) 788, 1342
BssECI CCNNGG 2 cut(s) 357, 382
BssMI GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
BssNI GRCGYC 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 7 cut(s) 133, 302, 371, 590, 665, 817, 1236
Bst6I CTCTTC 1 cut(s) 1243
BstACI GRCGYC 1 cut(s) 621
BstC8I GCNNGC 6 cut(s) 825, 890, 912, 1161, 1185, 1344
BstDEI CTNAG 6 cut(s) 339, 498, 831, 884, 1261, 1452
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 1013
BstFNI CGCG 2 cut(s) 219, 1241
BstKTI GATC 8 cut(s) 582, 717, 738, 961, 1155, 1204, 1415, 1458
BstMAI GTCTC 3 cut(s) 122, 1225, 1362
BstMBI GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
BstMWI GCNNNNNNNGC 5 cut(s) 38, 798, 1010, 1184, 1307
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 2 cut(s) 439, 1288
BstSFI CTRYAG 1 cut(s) 1024
BstUI CGCG 2 cut(s) 219, 1241
BstV1I GCAGC 7 cut(s) 481, 610, 814, 832, 926, 1038, 1109
BstV2I GAAGAC 3 cut(s) 480, 661, 916
BstX2I RGATCY 3 cut(s) 1201, 1412, 1455
BstYI RGATCY 3 cut(s) 1201, 1412, 1455
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 994
BtsCI GGATG 1 cut(s) 1013
BtsIMutI CAGTG 2 cut(s) 336, 670
BveI ACCTGC 1 cut(s) 923
Cac8I GCNNGC 6 cut(s) 825, 890, 912, 1161, 1185, 1344
Cfr10I RCCGGY 2 cut(s) 788, 1342
Cfr13I GGNCC 4 cut(s) 425, 515, 568, 813
Csp6I GTAC 1 cut(s) 586
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 4 cut(s) 179, 229, 793, 1042
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 6 cut(s) 339, 498, 831, 884, 1261, 1452
DpnI GATC 8 cut(s) 581, 716, 737, 960, 1154, 1203, 1414, 1457
DpnII GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
DraIII CACNNNGTG 1 cut(s) 1428
DrdI GACNNNNNNGTC 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 1243
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 1243
EciI GGCGGA 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 949
Eco47I GGWCC 3 cut(s) 515, 568, 813
Eco88I CYCGRG 2 cut(s) 185, 1273
EcoRII CCWGG 1 cut(s) 439
EcoRV GATATC 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 182, 232, 796, 1045
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 678, 710
FaqI GGGAC 1 cut(s) 501
FatI CATG 4 cut(s) 178, 228, 792, 1041
FauI CCCGC 2 cut(s) 536, 881
FauNDI CATATG 1 cut(s) 1390
Fnu4HI GCNGC 7 cut(s) 495, 599, 821, 828, 915, 1027, 1123
FokI GGATG 1 cut(s) 1000
Fsp4HI GCNGC 7 cut(s) 495, 599, 821, 828, 915, 1027, 1123
FspBI CTAG 9 cut(s) 29, 59, 983, 1091, 1104, 1145, 1184, 1307, 1352
GluI GCNGC 7 cut(s) 495, 599, 821, 828, 915, 1027, 1123
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 1 cut(s) 426
HapII CCGG 3 cut(s) 789, 1289, 1343
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 4 cut(s) 182, 232, 796, 1045
HincII GTYRAC 3 cut(s) 256, 769, 970
HindII GTYRAC 3 cut(s) 256, 769, 970
HindIII AAGCTT 2 cut(s) 612, 1161
HinfI GANTC 6 cut(s) 188, 860, 1107, 1251, 1303, 1319
HpaII CCGG 3 cut(s) 789, 1289, 1343
HphI GGTGA 5 cut(s) 308, 416, 602, 701, 1106
Hpy166II GTNNAC 6 cut(s) 100, 256, 571, 769, 813, 970
Hpy188I TCNGA 6 cut(s) 54, 210, 676, 963, 1133, 1460
Hpy188III TCNNGA 9 cut(s) 268, 549, 733, 869, 952, 1111, 1205, 1228, 1435
Hpy8I GTNNAC 6 cut(s) 100, 256, 571, 769, 813, 970
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 146, 404, 994, 1403
HpyCH4III ACNGT 7 cut(s) 133, 302, 371, 590, 665, 817, 1236
HpyCH4IV ACGT 3 cut(s) 621, 904, 993
HpyCH4V TGCA 8 cut(s) 74, 598, 608, 820, 910, 1026, 1125, 1442
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 798, 1010, 1184, 1307
HpyF3I CTNAG 6 cut(s) 339, 498, 831, 884, 1261, 1452
HpySE526I ACGT 3 cut(s) 621, 904, 993
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 4 cut(s) 182, 232, 796, 1045
KroI GCCGGC 1 cut(s) 1342
KroNI GCCGGC 1 cut(s) 1344
Kzo9I GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
LmnI GCTCC 2 cut(s) 655, 853
Lsp1109I GCAGC 7 cut(s) 481, 610, 814, 832, 926, 1038, 1109
LweI GCATC 4 cut(s) 426, 862, 1022, 1134
MaeI CTAG 9 cut(s) 29, 59, 983, 1091, 1104, 1145, 1184, 1307, 1352
MaeII ACGT 3 cut(s) 621, 904, 993
MaeIII GTNAC 2 cut(s) 296, 523
MalI GATC 8 cut(s) 581, 716, 737, 960, 1154, 1203, 1414, 1457
MboI GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
MboII GAAGA 7 cut(s) 152, 419, 485, 661, 916, 1132, 1260
MflI RGATCY 3 cut(s) 1201, 1412, 1455
MhlI GDGCHC 2 cut(s) 418, 1384
MluCI AATT 1 cut(s) 641
MluI ACGCGT 1 cut(s) 217
MlyI GAGTC 3 cut(s) 197, 1260, 1312
MroNI GCCGGC 1 cut(s) 1342
MroXI GAANNNNTTC 3 cut(s) 83, 112, 371
MseI TTAA 2 cut(s) 237, 894
MslI CAYNNNNRTG 1 cut(s) 1389
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 3 cut(s) 789, 1289, 1343
MspR9I CCNGG 2 cut(s) 441, 1290
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 2 cut(s) 219, 1241
MwoI GCNNNNNNNGC 5 cut(s) 38, 798, 1010, 1184, 1307
NaeI GCCGGC 1 cut(s) 1344
NciI CCSGG 1 cut(s) 1290
NdeI CATATG 1 cut(s) 1390
NdeII GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
NgoMIV GCCGGC 1 cut(s) 1342
NheI GCTAGC 1 cut(s) 1183
NlaIII CATG 4 cut(s) 182, 232, 796, 1045
NlaIV GGNNCC 3 cut(s) 517, 881, 1203
NmuCI GTSAC 2 cut(s) 296, 523
PaqCI CACCTGC 1 cut(s) 923
PdiI GCCGGC 1 cut(s) 1344
PdmI GAANNNNTTC 3 cut(s) 83, 112, 371
PfeI GAWTC 3 cut(s) 860, 1107, 1319
PflFI GACNNNGTC 1 cut(s) 773
PkrI GCNGC 7 cut(s) 496, 600, 822, 829, 916, 1028, 1124
PleI GAGTC 3 cut(s) 196, 1259, 1311
PpsI GAGTC 3 cut(s) 196, 1259, 1311
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 517, 881, 1203
PspPI GGNCC 4 cut(s) 425, 515, 568, 813
PstI CTGCAG 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 1201, 1412, 1455
PsyI GACNNNGTC 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 1 cut(s) 1389
SaqAI TTAA 2 cut(s) 237, 894
SatI GCNGC 7 cut(s) 495, 599, 821, 828, 915, 1027, 1123
Sau3AI GATC 8 cut(s) 579, 714, 735, 958, 1152, 1201, 1412, 1455
Sau96I GGNCC 4 cut(s) 425, 515, 568, 813
SchI GAGTC 3 cut(s) 197, 1260, 1312
ScrFI CCNGG 2 cut(s) 441, 1290
SduI GDGCHC 2 cut(s) 418, 1384
SfaNI GCATC 4 cut(s) 426, 862, 1022, 1134
SfcI CTRYAG 1 cut(s) 1024
SinI GGWCC 3 cut(s) 515, 568, 813
SmiMI CAYNNNNRTG 1 cut(s) 1389
SmlI CTYRAG 3 cut(s) 485, 626, 695
SmoI CTYRAG 3 cut(s) 485, 626, 695
Sse9I AATT 1 cut(s) 641
SsiI CCGC 4 cut(s) 362, 543, 888, 1239
SspMI CTAG 9 cut(s) 29, 59, 983, 1091, 1104, 1145, 1184, 1307, 1352
StyD4I CCNGG 2 cut(s) 439, 1288
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 7 cut(s) 133, 302, 371, 590, 665, 817, 1236
TaiI ACGT 3 cut(s) 624, 907, 996
TaqI TCGA 7 cut(s) 135, 309, 471, 582, 647, 987, 1227
TaqII GACCGA 1 cut(s) 971
TasI AATT 1 cut(s) 641
TfiI GAWTC 3 cut(s) 860, 1107, 1319
Tru1I TTAA 2 cut(s) 237, 894
Tru9I TTAA 2 cut(s) 237, 894
TscAI CASTG 2 cut(s) 343, 670
TseFI GTSAC 2 cut(s) 296, 523
TseI GCWGC 7 cut(s) 494, 598, 820, 827, 914, 1026, 1122
Tsp45I GTSAC 2 cut(s) 296, 523
TspDTI ATGAA 6 cut(s) 336, 468, 809, 915, 1058, 1407
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 2 cut(s) 343, 670
Tth111I GACNNNGTC 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 515, 568, 813
XmnI GAANNNNTTC 3 cut(s) 83, 112, 371
XspI CTAG 9 cut(s) 29, 59, 983, 1091, 1104, 1145, 1184, 1307, 1352
ZraI GACGTC 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.