Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007049

Physical Location & Seq

Genomic Coordinates Forward (+)

422336 .. 423202

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAGCTCATAGCAGAGGCTTATGATGTGCTGAAATCAGTGGGAAAGTTGTCAAATGAGGAACTCCAAAAAGCTTTCTCAGAGTGGAACAAGGGTGAGCTTCTCAGCTTCCTGATTGAAATCACTGCCGATATATTTGGAATCAAGGATGACAAGGGAGATGGATATTTGGTTGACAAGGTTTTGGACAAGACTGGCATGAAGGGTACTGGTAAATGGACTGTACAGCAAGCTGCTGAACTATCTGTTGCAGCTCCAACAATTGAATCTTCTTTGGATGCAAGGTTCCTTAGTGGGTTAAAGGACGAGAGGGTTAAAGCAGCTAAAGTGTTCAAATCAGCTGGCTTTGAGGATAGCTTGAATGCCCCAGAGGTGGATAAGGCAAAGTTGATCGATGATGTGAGGCAAGCTCTTTATGCATCCAAGATATGCAGTTATGCACAAGGGATGAATCTGATCCGTGCAAAGAGTATTGAGCAGGGATGGGACTTGAAGTTGGGCGAATTGGCCAGGATTTGGAAGGGAGGATGCATCATTCGTGCAGTGTTCCTGGACAGAATTAAGAAGGCATATGATAGGAATGCTGATCTCGCAAACCTTCTCGTGGACCCAGAGTTCTCGAAAGAGATTGTTGAGAGGCAGTCTGCCTGGAGAAGGGTGGTATGCCTTGCTATCAACTCAGGCATCAGCACCCCAGGTATGTCAGCAAGTCTTGCTTATTTTGACTCCTACAGAAGGGAGAGCCTGCCGGCGAACTTGGTCCAAGCTCAACGAGACTACTTTGGTGCTCATACATACGAACGCACTGACATGGAAGGCACTTTCCATACCGAATGGTTCAAGATCGCCAAACAGTCAAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0004616 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008037 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0019822 GO:0019953 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045026 GO:0050896 GO:0051704 GO:0055114 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0080173 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

289

Amino Acids

32.21

Weight (kDa)

6.77

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
6PGD	PF00393	1 - 279	1.4e-115	6-phosphogluconate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02360 AT3G02360
fragaria_vesca	FvH4_6g45960 FvH4_6g45960
malus_domestica	MD09G1078700.v1.1 MD17G1068900.v1.1
prunus_persica	Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1
pyrus_communis	pycom09g00550 pycom17g06930
rosa_chinensis	RchiOBHm_Chr2g0164191
rosa_laevigata	RLG00000021443
rosa_multiflora	Rmu_sc0001427.1_g000016 Rmu_sc0025732.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086730
rosa_rugosa	Rorug02G0506700 Rorug02G0506800 Rorug02G0506900 Rorug02G0507000
rosa_samantha	Rh2AG575200 Rh2BG585900 Rh2CG556800 Rh2DG595500
rosa_wichuraiana	Rw2G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	516
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	507
AfaI	GTAC	2 cut(s)	208, 225
AfiI	CCNNNNNNNGG	5 cut(s)	373, 516, 604, 654, 735
AgsI	TTSAA	6 cut(s)	119, 266, 334, 361, 493, 841
AjnI	CCWGG	4 cut(s)	509, 549, 647, 694
AloI	GAACNNNNNNTCC	4 cut(s)	269, 301, 599, 631
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	4 cut(s)	4, 233, 251, 320
AspS9I	GGNCC	2 cut(s)	607, 760
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	607, 760
BalI	TGGCCA	1 cut(s)	509
BauI	CACGAG	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	4 cut(s)	16, 220, 263, 332
BccI	CCATC	2 cut(s)	155, 477
BciT130I	CCWGG	4 cut(s)	511, 551, 649, 696
BcoDI	GTCTC	1 cut(s)	768
BfmI	CTRYAG	1 cut(s)	730
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	4 cut(s)	5, 234, 252, 321
BlsI	GCNGC	4 cut(s)	6, 235, 253, 322
Bme1390I	CCNGG	4 cut(s)	511, 551, 649, 696
Bme18I	GGWCC	2 cut(s)	607, 760
BmgT120I	GGNCC	2 cut(s)	607, 760
BmiI	GGNNCC	2 cut(s)	287, 609
BmrFI	CCNGG	4 cut(s)	511, 551, 649, 696
BmsI	GCATC	5 cut(s)	268, 428, 518, 540, 693
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BpmI	CTGGAG	1 cut(s)	670
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 516, 604, 654, 735
Bse118I	RCCGGY	1 cut(s)	748
Bse1I	ACTGG	2 cut(s)	199, 214
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	4 cut(s)	511, 551, 649, 696
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	6 cut(s)	154, 283, 419, 453, 488, 533
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	5 cut(s)	373, 516, 604, 654, 735
BseMII	CTCAG	3 cut(s)	93, 118, 693
BseNI	ACTGG	2 cut(s)	199, 214
BseXI	GCAGC	4 cut(s)	16, 220, 263, 332
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	1 cut(s)	749
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	5 cut(s)	373, 516, 604, 654, 735
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	2 cut(s)	367, 586
BsnI	GGCC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	390, 456, 586, 843, 861
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	3 cut(s)	92, 117, 692
BspDI	ATCGAT	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	287, 609
BspPI	GGATC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	748
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	199, 214
BssAI	RCCGGY	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	5 cut(s)	390, 456, 586, 843, 861
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	4 cut(s)	511, 551, 649, 696
Bst4CI	ACNGT	2 cut(s)	223, 855
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	5 cut(s)	231, 343, 408, 746, 750
BstDEI	CTNAG	4 cut(s)	79, 104, 290, 679
BstENI	CCTNNNNNAGG	2 cut(s)	652, 733
BstF5I	GGATG	6 cut(s)	154, 283, 419, 453, 488, 533
BstKTI	GATC	5 cut(s)	393, 459, 589, 846, 864
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	5 cut(s)	390, 456, 586, 843, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 590, 713
BstNI	CCWGG	4 cut(s)	511, 551, 649, 696
BstSCI	CCNGG	4 cut(s)	509, 549, 647, 694
BstSFI	CTRYAG	1 cut(s)	730
BstV1I	GCAGC	4 cut(s)	16, 220, 263, 332
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	509
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	6 cut(s)	154, 283, 419, 453, 488, 533
BtsI	GCAGTG	2 cut(s)	123, 549
BtsIMutI	CAGTG	4 cut(s)	45, 123, 549, 804
Cac8I	GCNNGC	5 cut(s)	231, 343, 408, 746, 750
Cfr10I	RCCGGY	1 cut(s)	748
Cfr13I	GGNCC	2 cut(s)	607, 760
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	207, 224
CviAII	CATG	2 cut(s)	199, 811
CviQI	GTAC	2 cut(s)	207, 224
DdeI	CTNAG	4 cut(s)	79, 104, 290, 679
DpnI	GATC	5 cut(s)	392, 458, 588, 845, 863
DpnII	GATC	5 cut(s)	390, 456, 586, 843, 861
EaeI	YGGCCR	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	607, 760
EcoNI	CCTNNNNNAGG	2 cut(s)	652, 733
EcoRII	CCWGG	4 cut(s)	509, 549, 647, 694
EcoT22I	ATGCAT	2 cut(s)	421, 533
FaeI	CATG	2 cut(s)	202, 814
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	198, 810
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	5, 234, 252, 321
FokI	GGATG	6 cut(s)	161, 290, 406, 460, 495, 540
Fsp4HI	GCNGC	4 cut(s)	5, 234, 252, 321
GluI	GCNGC	4 cut(s)	5, 234, 252, 321
GsuI	CTGGAG	1 cut(s)	670
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	1 cut(s)	749
Hin1II	CATG	2 cut(s)	202, 814
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	4 cut(s)	141, 266, 451, 725
HpaII	CCGG	1 cut(s)	749
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	175, 607
Hpy188I	TCNGA	2 cut(s)	82, 456
Hpy188III	TCNNGA	3 cut(s)	112, 619, 841
Hpy8I	GTNNAC	2 cut(s)	175, 607
HpyAV	CCTTC	7 cut(s)	196, 514, 559, 608, 648, 729, 809
HpyCH4III	ACNGT	2 cut(s)	223, 855
HpyCH4V	TGCA	9 cut(s)	4, 251, 281, 419, 432, 440, 464, 531, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 590, 713
HpyF3I	CTNAG	4 cut(s)	79, 104, 290, 679
Hsp92II	CATG	2 cut(s)	202, 814
KroI	GCCGGC	1 cut(s)	748
KroNI	GCCGGC	1 cut(s)	750
Kzo9I	GATC	5 cut(s)	390, 456, 586, 843, 861
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	4 cut(s)	16, 220, 263, 332
LweI	GCATC	5 cut(s)	268, 428, 518, 540, 693
MalI	GATC	5 cut(s)	392, 458, 588, 845, 863
MboI	GATC	5 cut(s)	390, 456, 586, 843, 861
MboII	GAAGA	1 cut(s)	261
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	1 cut(s)	790
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	3 cut(s)	261, 503, 558
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	8 cut(s)	10, 52, 303, 343, 364, 396, 518, 630
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	2 cut(s)	421, 533
MroNI	GCCGGC	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	3 cut(s)	299, 315, 561
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	749
MspR9I	CCNGG	4 cut(s)	511, 551, 649, 696
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	2 cut(s)	367, 586
MvaI	CCWGG	4 cut(s)	511, 551, 649, 696
MwoI	GCNNNNNNNGC	3 cut(s)	416, 590, 713
NaeI	GCCGGC	1 cut(s)	750
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	5 cut(s)	390, 456, 586, 843, 861
NgoMIV	GCCGGC	1 cut(s)	748
NlaIII	CATG	2 cut(s)	202, 814
NlaIV	GGNNCC	2 cut(s)	287, 609
NsiI	ATGCAT	2 cut(s)	421, 533
PctI	GAATGC	2 cut(s)	367, 586
PdiI	GCCGGC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	141, 266, 451
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	6, 235, 253, 322
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Psp6I	CCWGG	4 cut(s)	509, 549, 647, 694
PspGI	CCWGG	4 cut(s)	509, 549, 647, 694
PspN4I	GGNNCC	2 cut(s)	287, 609
PspPI	GGNCC	2 cut(s)	607, 760
PsuI	RGATCY	1 cut(s)	861
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	208, 225
RsaNI	GTAC	2 cut(s)	207, 224
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	3 cut(s)	299, 315, 561
SatI	GCNGC	4 cut(s)	5, 234, 252, 321
Sau3AI	GATC	5 cut(s)	390, 456, 586, 843, 861
Sau96I	GGNCC	2 cut(s)	607, 760
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	4 cut(s)	511, 551, 649, 696
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	5 cut(s)	268, 428, 518, 540, 693
SfcI	CTRYAG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	607, 760
SmiMI	CAYNNNNRTG	1 cut(s)	809
Sse9I	AATT	3 cut(s)	261, 503, 558
StyD4I	CCNGG	4 cut(s)	509, 549, 647, 694
TaaI	ACNGT	2 cut(s)	223, 855
TaqI	TCGA	2 cut(s)	393, 620
TasI	AATT	3 cut(s)	261, 503, 558
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	141, 266, 451
Tru1I	TTAA	3 cut(s)	299, 315, 561
Tru9I	TTAA	3 cut(s)	299, 315, 561
TscAI	CASTG	4 cut(s)	45, 130, 549, 811
TseI	GCWGC	4 cut(s)	4, 233, 251, 320
TspDTI	ATGAA	2 cut(s)	215, 464
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	4 cut(s)	45, 130, 549, 811
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	607, 760
XagI	CCTNNNNNAGG	2 cut(s)	652, 733
Zsp2I	ATGCAT	2 cut(s)	421, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.