Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007049

Physical Location & Seq

Genomic Coordinates Reverse (-)

63838341 .. 63845839

Gene Structure 7499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCTCAGAGTGATTCTCTGGCGCACTTGGAGGAGTTGGCAGTTCCCCATAACCACATTGATCAGATAATAGACGAGTATCCAGTTCCTAAGGTGAAATGGAAATGTCCTTACCGTGGGTGGCTGAAAGTGAACTGTAGTGCTGTGTGGGAACATGAATCAAGAGTGGCAGGCATGGCTTGGGTTTGCAGGAACGATGAAGGAGCTTTCGTGGCCGCTGGAAGTCTTGGTGGGATAAGATGCATGGACAGGTTTTTTGCTGAAGCTCTCAGCATCGCTAAGGCTATCGAGTTTTGTACCACTATTATTGGTGATGTTTCTGGCGACAACGTCGGCCGCATAATTGTGGAGTCTGATAACCAGGATCTCATGGATTGCTTGCTTCAGCTGCATGACGAGGACCTAGTTGTACCGAAAACATACTTGAACAACTCTAGCATGGAACCGAATAACCGTATTGGCGAAAACCTTCGACCAATCCTTGGGGATATTTACATCCGCTTGGCTCCAGGGTTTAAGGCTATTACTTATGTGCATTGTGACAGCCAATGTAATGCAGCTGCTCATTGCGTGGCATCTCATGCCATGGATGATGCTACTGATTCTTCGTCTTGGTATGGTCCCGATCCGGCCCCTAGTTGGCTAATTCCTGCTCTCACGAAGGATAGCCCGCATTGGTACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0004616 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008037 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0019822 GO:0019953 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045026 GO:0050896 GO:0051704 GO:0055114 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0080173 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

4.89

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	45 - 130	1.7e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02360 AT3G02360
fragaria_vesca	FvH4_6g45960 FvH4_6g45960
malus_domestica	MD09G1078700.v1.1 MD17G1068900.v1.1
prunus_persica	Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1
pyrus_communis	pycom09g00550 pycom17g06930
rosa_chinensis	RchiOBHm_Chr2g0164191
rosa_laevigata	RLG00000021443
rosa_multiflora	Rmu_sc0001427.1_g000016 Rmu_sc0025732.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086730
rosa_rugosa	Rorug02G0506700 Rorug02G0506800 Rorug02G0506900 Rorug02G0507000
rosa_samantha	Rh2AG575200 Rh2BG585900 Rh2CG556800 Rh2DG595500
rosa_wichuraiana	Rw2G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	4 cut(s)	216, 337, 499, 671
AclWI	GGATC	2 cut(s)	372, 620
AcoI	YGGCCR	2 cut(s)	213, 334
AcuI	CTGAAG	2 cut(s)	282, 368
AfaI	GTAC	3 cut(s)	298, 411, 680
AfiI	CCNNNNNNNGG	3 cut(s)	116, 482, 639
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	360, 508
AluBI	AGCT	4 cut(s)	206, 266, 388, 560
AluI	AGCT	4 cut(s)	206, 266, 388, 560
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	372, 620
AoxI	GGCC	3 cut(s)	213, 334, 630
ApeKI	GCWGC	3 cut(s)	388, 557, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	400, 620, 631
AsuHPI	GGTGA	2 cut(s)	106, 323
AvaII	GGWCC	2 cut(s)	400, 620
AxyI	CCTNAGG	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	375, 547, 569
BciT130I	CCWGG	2 cut(s)	362, 510
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	404, 435, 636
BfmI	CTRYAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	5 cut(s)	216, 337, 389, 558, 561
BlsI	GCNGC	5 cut(s)	217, 338, 390, 559, 562
Bme1390I	CCNGG	2 cut(s)	362, 510
Bme18I	GGWCC	2 cut(s)	400, 620
BmgT120I	GGNCC	3 cut(s)	400, 620, 631
BmiI	GGNNCC	4 cut(s)	444, 507, 622, 633
BmrFI	CCNGG	2 cut(s)	362, 510
BmsI	GCATC	4 cut(s)	230, 282, 583, 584
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	115, 481, 509, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 482, 639
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	362, 510
BseDI	CCNNGG	4 cut(s)	115, 481, 509, 585
BseGI	GGATG	2 cut(s)	495, 595
BseLI	CCNNNNNNNGG	3 cut(s)	116, 482, 639
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	20, 283
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	375, 547, 569
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	215, 336, 632
BsiEI	CGRYCG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	3 cut(s)	116, 482, 639
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	215, 336, 632
Bsp143I	GATC	3 cut(s)	61, 364, 625
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	4 cut(s)	216, 337, 499, 671
BspANI	GGCC	3 cut(s)	215, 336, 632
BspCNI	CTCAG	2 cut(s)	19, 282
BspLI	GGNNCC	4 cut(s)	444, 507, 622, 633
BspPI	GGATC	2 cut(s)	372, 620
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	4 cut(s)	115, 481, 509, 585
BssMI	GATC	3 cut(s)	61, 364, 625
BssT1I	CCWWGG	2 cut(s)	481, 585
Bst2UI	CCWGG	2 cut(s)	362, 510
Bst4CI	ACNGT	3 cut(s)	116, 137, 455
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	172, 380, 671
BstDEI	CTNAG	4 cut(s)	6, 90, 269, 279
BstDSI	CCRYGG	2 cut(s)	115, 585
BstF5I	GGATG	2 cut(s)	495, 595
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	64, 367, 628
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	61, 364, 625
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 212, 388, 581
BstNI	CCWGG	2 cut(s)	362, 510
BstSCI	CCNGG	2 cut(s)	360, 508
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	375, 547, 569
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BstZI	CGGCCG	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	215, 336, 632
BtgI	CCRYGG	2 cut(s)	115, 585
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	495, 595
Cac8I	GCNNGC	3 cut(s)	172, 380, 671
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	400, 620, 631
Csp6I	GTAC	3 cut(s)	297, 410, 679
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	9 cut(s)	155, 175, 244, 370, 392, 439, 581, 586, 684
CviQI	GTAC	3 cut(s)	297, 410, 679
DdeI	CTNAG	4 cut(s)	6, 90, 269, 279
DpnI	GATC	3 cut(s)	63, 366, 627
DpnII	GATC	3 cut(s)	61, 364, 625
EaeI	YGGCCR	2 cut(s)	213, 334
EagI	CGGCCG	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	481, 585
Eco47I	GGWCC	2 cut(s)	400, 620
Eco52I	CGGCCG	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	282, 368
Eco81I	CCTNAGG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	360, 508
EcoT14I	CCWWGG	2 cut(s)	481, 585
EcoT22I	ATGCAT	1 cut(s)	245
ErhI	CCWWGG	2 cut(s)	481, 585
FaeI	CATG	9 cut(s)	158, 178, 247, 373, 395, 442, 584, 589, 687
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	9 cut(s)	154, 174, 243, 369, 391, 438, 580, 585, 683
FauI	CCCGC	1 cut(s)	678
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	216, 337, 389, 558, 561
FokI	GGATG	2 cut(s)	482, 602
Fsp4HI	GCNGC	5 cut(s)	216, 337, 389, 558, 561
FspBI	CTAG	3 cut(s)	404, 435, 636
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	5 cut(s)	216, 337, 389, 558, 561
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	215, 336, 632
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	9 cut(s)	158, 178, 247, 373, 395, 442, 584, 589, 687
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	4 cut(s)	14, 158, 350, 602
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	106, 323
Hpy166II	GTNNAC	2 cut(s)	133, 681
Hpy188I	TCNGA	3 cut(s)	9, 66, 355
Hpy188III	TCNNGA	3 cut(s)	162, 623, 658
Hpy8I	GTNNAC	2 cut(s)	133, 681
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	194, 479, 655
HpyCH4III	ACNGT	3 cut(s)	116, 137, 455
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	5 cut(s)	189, 243, 391, 535, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 212, 388, 581
HpyF3I	CTNAG	4 cut(s)	6, 90, 269, 279
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	9 cut(s)	158, 178, 247, 373, 395, 442, 584, 589, 687
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 364, 625
LmnI	GCTCC	2 cut(s)	203, 511
Lsp1109I	GCAGC	3 cut(s)	375, 547, 569
LweI	GCATC	4 cut(s)	230, 282, 583, 584
MaeI	CTAG	3 cut(s)	404, 435, 636
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	3 cut(s)	63, 366, 627
MboI	GATC	3 cut(s)	61, 364, 625
MboII	GAAGA	1 cut(s)	597
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	2 cut(s)	342, 645
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	2 cut(s)	25, 391
Mph1103I	ATGCAT	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	3 cut(s)	218, 388, 560
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	362, 510
MvaI	CCWGG	2 cut(s)	362, 510
MwoI	GCNNNNNNNGC	4 cut(s)	176, 212, 388, 581
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	61, 364, 625
NlaIII	CATG	9 cut(s)	158, 178, 247, 373, 395, 442, 584, 589, 687
NlaIV	GGNNCC	4 cut(s)	444, 507, 622, 633
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	14, 158, 602
PflFI	GACNNNGTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	217, 338, 390, 559, 562
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	360, 508
PspGI	CCWGG	2 cut(s)	360, 508
PspN4I	GGNNCC	4 cut(s)	444, 507, 622, 633
PspPI	GGNCC	3 cut(s)	400, 620, 631
PspPPI	RGGWCCY	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	2 cut(s)	388, 560
RsaI	GTAC	3 cut(s)	298, 411, 680
RsaNI	GTAC	3 cut(s)	297, 410, 679
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	5 cut(s)	216, 337, 389, 558, 561
Sau3AI	GATC	3 cut(s)	61, 364, 625
Sau96I	GGNCC	3 cut(s)	400, 620, 631
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	362, 510
SetI	ASST	9 cut(s)	96, 208, 254, 268, 333, 390, 405, 471, 562
SfaNI	GCATC	4 cut(s)	230, 282, 583, 584
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	400, 620
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	342, 645
SsiI	CCGC	4 cut(s)	216, 337, 499, 671
SspMI	CTAG	3 cut(s)	404, 435, 636
StyD4I	CCNGG	2 cut(s)	360, 508
StyI	CCWWGG	2 cut(s)	481, 585
TaaI	ACNGT	3 cut(s)	116, 137, 455
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	288, 472
TasI	AATT	2 cut(s)	342, 645
TauI	GCSGC	2 cut(s)	218, 339
TfiI	GAWTC	3 cut(s)	14, 158, 602
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	3 cut(s)	388, 557, 560
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	171, 213
Tth111I	GACNNNGTC	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	400, 620
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	404, 435, 636
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.