Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007049

Physical Location & Seq

Genomic Coordinates Forward (+)

63834120 .. 63838123

Gene Structure 4004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0506800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3201 bp

ATGCCAAACAGTACCATTGGTGATCAAGCTTCTGAAGGTGTCAGCCACTCGACTTTTACTACTGACCTTATTCAAACCGTTAGTAGTTGTGTCCAATATGAGCAGAGCAAGCAGAGCCGCTGGTATAAATACATTGCTGTTGGGGTTTTCATCTGGCGCACCAGAAACAAGTCACGCCTCCGCAAAGCAAAGGCCCCTCGTTATCAACGGTTTCTGAAAAAGGTTGCTCACCTTGATGTGGGACAGACGGTCTCACACCTCGGATCCTACTTCAAGGATCGTGCTGCTTATATCCCTTTATTAGCACCAACAACTCCAACAACGCCGCCGGACGCAGCTGCCTCAAATCATGTGATTGACATCCCTCTTCAAGAATGGCTTCTGAAAGAGGTTGCTCGCATTGTGAGAGAGAAGGACTTGAATGCACTGCGAGCACGCGGTGGTGTTGATGGTGTTTCAGCACTTCTCAGGTCTCACTCTGAGGATCATGCTGATGATGGTGGTCAAGTTCCACAACTATCATTGAAGACTACCAAGCCTGTTTTCTTTCACTTCCTGTTGAAGGCTTGCAATCAGTACACAATCTTTTTCCTCCTAGGCTCAGCTGGGTTGCAATTTGCTATTGAATTTATGAAGCAAGGAGTCAAACAAGGGTGGCATGATGGTGTTGCCATACTTGTTACTGTGTTCCTACTCGTTGCTTTTCCTTCAGTTGGGAACTATCGCAACGAGAGGAAGATGGTGAAGCAGTTGATGGAGAGGAACAAATTTCTGGTGGATGTTGAAAGAAATGGAGAATCTAGAGCGGTTATGATATCTCATGTTTCGGTGGGTGATATAGTTCATTTGAAGAAGGGAGACCATGTTCCTGCTGATGGCTTGTTCATAGATCATGGTGTGGAACTGGTCTTGGATGAGGTATTGAGCCCCACAATTGATTTTGAAAACAACCCATTTGTGTTGTCTGGTTCAAAAGTTATTGAGGGCCAGGGTCGAATGATGGTGACATCTGTCGGTGTCAATACTGCTTTTGCAGAGATGCTGAGCTTGGTGACTGAGGATCATAATCCAAATAGGAAGACTCTGTTACAAGCTTTGATGGACAAACCATATACTTATATGGAGTATCTTGCGTGTTGTGTTTCAATTCTGATTGCTGTTGTGGTGCTAATACGGTTACTAGTATTCAGGAAGCATGACAACTACAATGACAGGCCAGACCTGAAAGGGGAAGTTTCAGTGAGCTTGCTGATGAAGATTTTCGAGAAAATATACTTGAAAACTCAAGGAAGGGTCTCCACTTTAGCAAGTGTTCTTGCTACTGTGGTAATTGGGATACAACATGGAATGCCCTTTGTGATTTCCCTTGCACTTTGTCAATGGAAGGAGAAGGTGGTCCAAAATGGGGCAGATCCTCGGAATCTTTCAGCTTGTGTCACCATGGGACTCATAACAGTCATCTGCATTGAAACAACTAGTGAGAAAATGTGCAACGAGATGGAGGTTATGGACTTTTGGATAGGTGATAAGGATTTAAGCAATGAAGTGGAGTCTGATGAAACTGAACAATTTGCTCTCAAAGGACTACGTCAAGAGATTTCTGCTACCCCAGCAAATGATTCGTTCATTTCTTCGATCAAGACCAGATGGGGCGTTACTGACATGGAGGTATTGGAACAGACATTTATAACTCTGGAAGAGAGAAAATTGAGTTCTGATGAGAAATGTAGTGGCATCCTAATGAGGAAAACAGAGAGCAGTGCACAAGATATGCAGCTGCATATGAGTGGAGATGCATCAACAATCTTAGACATGTGTTCACATTATAATGATAAGACTGGGGAAAGTCGTATTCTGGAAATTCAGAAGAGAAAGTTTAAGCTGGTCATTAAGAACATGGAGGAGAAGGGTCTTAGACCGATTGCATATGCTTACAAGAAAACAAATGTTCAAGAATTTACAGAAAATGGGTTGAAATTGTTGGCACTGGTGGGAGTCAGATGCCCATATCAAGAAGAGCTTAAAATTGCAGTGGAAGCTTTTAGAAAGGCCGGAATAAAAATCAAGCTGGTATCCGAGGATGAGCTCTCAATAGTGACTGAGCGAGCTTCTGATCTTGGAATCTTTAACCCTGGTAGTGGTGATATGGAGATTATCGCAGGCGAAGCTTTCAGAAGACTCAACTCCATGGAAAGACTAAATAAGGTGGATTTGATATCTGTGATGGGAAGTTCTCTCCCAAGAGACAAGCTTCTCATGGTGGAGCGCTTAAAGAAAAACGGTCACATAGTAGCGTTCTATGGAGGGTTAACCATAAATGATACTAGGACTTTGAAAGAAGCTGATGTTGGAATCACAGAGGATATATGGAGCACTGAGATGGCCAGAGACAATGCTGATATTATAGTTAAGGATGGCTGCTTATGGTTCCTGAACTTGAAGTCTGGGAAATGTGCTTACCACAACATTCAGAACTTCTGTCAAATTCAGCTCACGGCTTGCATATCCGGGTTGCTAGTAACGTTAGTAGCAACGATGCATTCAGGGGACTCTCCATTGACCGCAATTCACTTGATTTGGGTGAACTTGATAATGTGCCTTCTAGGCAGCCTAATGATGGTAATGGAGTTAGAACGCCAGGAGCCACTTGCTCAAGAACCAGCGCCAAGGACTCAAGAACCGGCGCCAAGGGCTCAGCCACTTATAACCAAAGCCATCTGGAGAAACATAGCCATTCAAGTTTCATACCAGGCTTCCATCTTGCTGGTCTTGCATTTCATGGGAAATGCAATAGTGAGCATGAACCAAGGCGTCCCGGGTACCATGGTTTTCAATATTTACACCTTGTGTCAGGTCCTTAATCTGTTCAGGGCCATGCACCTACTGAACAAGGAAGTGCTAAATGTTGTTCTTCACAGCTATTGGTTTTTGATGGCCTTGGGGGCTGTTATGGTCATGCAGGTGGTGATTGTTGAGTTTGGGAAAGGACTAGCCAGTGGTGTGAGGTTGGATGCAATACAGTGGGCATCCTGCTTCCTTCTTGCTGCTCTTTCATGGCCGTTTGATTTGCTCTTTCGAAGAGAAAATTTGGCATTGGGGAGAGCACCTATGGGGATGTCAAGATTTTACATTTGTGCTTCGTTGTTCCTCATTTTCTCTGTATCATATTGTTTCGAATCAGATTATGCACACACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0004616 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008037 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0016043 GO:0016491 GO:0016614 GO:0016616 GO:0019822 GO:0019953 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045026 GO:0050896 GO:0051704 GO:0055114 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0080173 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

1066

Amino Acids

119.34

Weight (kDa)

6.94

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	259 - 351	3.8e-10	P-type ATPase actuator domain
Cation_ATPase	PF13246	535 - 671	1.8e-10	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	851 - 1026	9.5e-23	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02360 AT3G02360
fragaria_vesca	FvH4_6g45960 FvH4_6g45960
malus_domestica	MD09G1078700.v1.1 MD17G1068900.v1.1
prunus_persica	Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1 Prupe.3G245700_v2.0.a1
pyrus_communis	pycom09g00550 pycom17g06930
rosa_chinensis	RchiOBHm_Chr2g0164191
rosa_laevigata	RLG00000021443
rosa_multiflora	Rmu_sc0001427.1_g000016 Rmu_sc0025732.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086730
rosa_rugosa	Rorug02G0506700 Rorug02G0506800 Rorug02G0506900 Rorug02G0507000
rosa_samantha	Rh2AG575200 Rh2BG585900 Rh2CG556800 Rh2DG595500
rosa_wichuraiana	Rw2G047610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1688, 1827, 2705
AarI	CACCTGC	1 cut(s)	2950
Acc36I	ACCTGC	1 cut(s)	2950
Acc65I	GGTACC	1 cut(s)	2819
AccB1I	GGYRCC	2 cut(s)	2683, 2819
AccBSI	CCGCTC	1 cut(s)	806
AccII	CGCG	1 cut(s)	438
AciI	CCGC	6 cut(s)	118, 181, 326, 438, 806, 2562
AclI	AACGTT	1 cut(s)	2522
AclWI	GGATC	6 cut(s)	258, 271, 285, 492, 1068, 1406
AcoI	YGGCCR	2 cut(s)	2382, 3056
AcsI	RAATTY	6 cut(s)	626, 767, 1860, 1955, 2484, 3085
AcuI	CTGAAG	2 cut(s)	54, 693
AcyI	GRCGYC	2 cut(s)	2684, 2811
AdeI	CACNNNGTG	2 cut(s)	440, 2847
AfaI	GTAC	3 cut(s)	13, 578, 2821
AfeI	AGCGCT	1 cut(s)	2267
AfiI	CCNNNNNNNGG	8 cut(s)	238, 562, 713, 875, 1228, 1405, 2138, 2617
AflIII	ACRYGT	1 cut(s)	1812
AhdI	GACNNNNNGTC	1 cut(s)	248
AhlI	ACTAGT	2 cut(s)	1180, 1475
AjnI	CCWGG	4 cut(s)	987, 2131, 2637, 2748
AjuI	GAANNNNNNNTTGG	4 cut(s)	527, 559, 2331, 2363
AloI	GAACNNNNNNTCC	2 cut(s)	849, 881
Alw21I	GWGCWC	5 cut(s)	436, 1765, 2088, 2375, 3106
Alw26I	GTCTC	6 cut(s)	256, 477, 852, 1300, 2238, 2382
Alw44I	GTGCAC	1 cut(s)	1761
AlwI	GGATC	6 cut(s)	258, 271, 285, 492, 1068, 1406
Ama87I	CYCGRG	1 cut(s)	2815
Aor51HI	AGCGCT	1 cut(s)	2267
AoxI	GGCC	8 cut(s)	192, 985, 1214, 2049, 2382, 2871, 2934, 3056
ApaLI	GTGCAC	1 cut(s)	1761
ApeKI	GCWGC	8 cut(s)	284, 335, 338, 1774, 1777, 2418, 2607, 3044
ApoI	RAATTY	6 cut(s)	626, 767, 1860, 1955, 2484, 3085
Asp700I	GAANNNNTTC	2 cut(s)	378, 1259
Asp718I	GGTACC	1 cut(s)	2819
AspA2I	CCTAGG	1 cut(s)	595
AspLEI	GCGC	4 cut(s)	159, 2268, 2665, 2686
AspS9I	GGNCC	5 cut(s)	193, 985, 1396, 2854, 2871
AsuC2I	CCSGG	3 cut(s)	2509, 2816, 2817
AsuII	TTCGAA	2 cut(s)	3076, 3174
AvaI	CYCGRG	1 cut(s)	2815
AvaII	GGWCC	2 cut(s)	1396, 2854
AvrII	CCTAGG	1 cut(s)	595
BaeGI	GKGCMC	1 cut(s)	1765
BaeI	ACNNNNGTAYC	2 cut(s)	2811, 2844
BalI	TGGCCA	1 cut(s)	2384
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	2683, 2819
BanII	GRGCYC	3 cut(s)	929, 2088, 2695
BbsI	GAAGAC	3 cut(s)	533, 1085, 2182
Bbv12I	GWGCWC	5 cut(s)	436, 1765, 2088, 2375, 3106
BbvI	GCAGC	8 cut(s)	271, 325, 347, 1764, 1786, 2405, 2619, 3031
BceAI	ACGGC	2 cut(s)	2511, 3043
BcgI	CGANNNNNNTGC	2 cut(s)	1602, 1636
BciT130I	CCWGG	4 cut(s)	989, 2133, 2639, 2750
BciVI	GTATCC	2 cut(s)	1329, 2083
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	3 cut(s)	2509, 2816, 2817
BcoDI	GTCTC	6 cut(s)	256, 477, 852, 1300, 2238, 2382
BcuI	ACTAGT	2 cut(s)	1180, 1475
BfaI	CTAG	8 cut(s)	596, 801, 1181, 1476, 2325, 2516, 2603, 2990
BfoI	RGCGCY	3 cut(s)	2269, 2666, 2687
BfuAI	ACCTGC	1 cut(s)	2950
BfuI	GTATCC	2 cut(s)	1329, 2083
BglI	GCCNNNNNGGC	2 cut(s)	2604, 2942
BlnI	CCTAGG	1 cut(s)	595
BlpI	GCTNAGC	3 cut(s)	601, 1043, 2694
Bme1390I	CCNGG	7 cut(s)	989, 2133, 2509, 2639, 2750, 2816, 2817
Bme18I	GGWCC	2 cut(s)	1396, 2854
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	2815
BmgT120I	GGNCC	5 cut(s)	193, 985, 1396, 2854, 2871
BmiI	GGNNCC	6 cut(s)	195, 265, 2429, 2643, 2685, 2821
BmrFI	CCNGG	7 cut(s)	989, 2133, 2509, 2639, 2750, 2816, 2817
BmrI	ACTGGG	1 cut(s)	1848
BmsI	GCATC	8 cut(s)	1029, 1743, 1783, 1805, 1991, 2526, 3001, 3035
BmuI	ACTGGG	1 cut(s)	1848
BoxI	GACNNNNGTC	1 cut(s)	1010
BpiI	GAAGAC	3 cut(s)	533, 1085, 2182
BpmI	CTGGAG	1 cut(s)	2740
Bpu1102I	GCTNAGC	3 cut(s)	601, 1043, 2694
Bpu14I	TTCGAA	2 cut(s)	3076, 3174
BpuEI	CTTGAG	3 cut(s)	1269, 2637, 2658
BpuMI	CCSGG	3 cut(s)	2509, 2816, 2817
BsaBI	GATNNNNATC	2 cut(s)	359, 1065
BsaHI	GRCGYC	2 cut(s)	2684, 2811
BsaI	GGTCTC	4 cut(s)	256, 477, 852, 1300
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	8 cut(s)	238, 562, 713, 875, 1228, 1405, 2138, 2617
Bse118I	RCCGGY	1 cut(s)	2680
Bse1I	ACTGG	4 cut(s)	909, 1843, 1992, 2994
Bse3DI	GCAATG	2 cut(s)	132, 1546
Bse8I	GATNNNNATC	2 cut(s)	359, 1065
BseBI	CCWGG	4 cut(s)	989, 2133, 2639, 2750
BseGI	GGATG	9 cut(s)	360, 784, 919, 1734, 2086, 2419, 3016, 3026, 3120
BseJI	GATNNNNATC	2 cut(s)	359, 1065
BseLI	CCNNNNNNNGG	8 cut(s)	238, 562, 713, 875, 1228, 1405, 2138, 2617
BseMI	GCAATG	2 cut(s)	132, 1546
BseMII	CTCAG	8 cut(s)	471, 481, 615, 1034, 1047, 2091, 2367, 2708
BseNI	ACTGG	4 cut(s)	909, 1843, 1992, 2994
BseRI	GAGGAG	1 cut(s)	1916
BseSI	GKGCMC	1 cut(s)	1765
BseXI	GCAGC	8 cut(s)	271, 325, 347, 1764, 1786, 2405, 2619, 3031
BseYI	CCCAGC	2 cut(s)	605, 1609
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	8 cut(s)	194, 987, 1216, 2051, 2384, 2873, 2936, 3058
BshNI	GGYRCC	2 cut(s)	2683, 2819
BsiHKAI	GWGCWC	5 cut(s)	436, 1765, 2088, 2375, 3106
BsiHKCI	CYCGRG	1 cut(s)	2815
BsiSI	CCGG	5 cut(s)	329, 2052, 2508, 2681, 2816
BslFI	GGGAC	4 cut(s)	255, 1458, 2561, 2798
BslI	CCNNNNNNNGG	8 cut(s)	238, 562, 713, 875, 1228, 1405, 2138, 2617
BsmAI	GTCTC	6 cut(s)	256, 477, 852, 1300, 2238, 2382
BsmFI	GGGAC	4 cut(s)	255, 1458, 2561, 2798
BsmI	GAATGC	3 cut(s)	427, 1353, 2539
BsnI	GGCC	8 cut(s)	194, 987, 1216, 2051, 2384, 2873, 2936, 3058
Bso31I	GGTCTC	4 cut(s)	256, 477, 852, 1300
BsoBI	CYCGRG	1 cut(s)	2815
Bsp119I	TTCGAA	2 cut(s)	3076, 3174
Bsp1286I	GDGCHC	7 cut(s)	436, 929, 1765, 2088, 2375, 2695, 3106
Bsp143I	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
Bsp1720I	GCTNAGC	3 cut(s)	601, 1043, 2694
Bsp19I	CCATGG	3 cut(s)	1440, 2187, 2823
BspACI	CCGC	6 cut(s)	118, 181, 326, 438, 806, 2562
BspANI	GGCC	8 cut(s)	194, 987, 1216, 2051, 2384, 2873, 2936, 3058
BspCNI	CTCAG	8 cut(s)	472, 480, 614, 1035, 1048, 2092, 2368, 2707
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	6 cut(s)	195, 265, 2429, 2643, 2685, 2821
BspMI	ACCTGC	1 cut(s)	2950
BspPI	GGATC	6 cut(s)	258, 271, 285, 492, 1068, 1406
BspQI	GCTCTTC	1 cut(s)	2010
BspT104I	TTCGAA	2 cut(s)	3076, 3174
BspT107I	GGYRCC	2 cut(s)	2683, 2819
BspTNI	GGTCTC	4 cut(s)	256, 477, 852, 1300
BsrBI	CCGCTC	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	132, 1546
BsrFI	RCCGGY	1 cut(s)	2680
BsrI	ACTGG	4 cut(s)	909, 1843, 1992, 2994
BssAI	RCCGGY	1 cut(s)	2680
BssMI	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
BssNI	GRCGYC	2 cut(s)	2684, 2811
BssT1I	CCWWGG	8 cut(s)	595, 1440, 2187, 2666, 2687, 2806, 2823, 2937
Bst2UI	CCWGG	4 cut(s)	989, 2133, 2639, 2750
Bst6I	CTCTTC	5 cut(s)	372, 1692, 1862, 2010, 3073
BstACI	GRCGYC	2 cut(s)	2684, 2811
BstBI	TTCGAA	2 cut(s)	3076, 3174
BstC8I	GCNNGC	9 cut(s)	110, 397, 432, 436, 568, 1247, 2106, 2161, 2500
BstDSI	CCRYGG	3 cut(s)	1440, 2187, 2823
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	9 cut(s)	360, 784, 919, 1734, 2086, 2419, 3016, 3026, 3120
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	3 cut(s)	2269, 2666, 2687
BstHHI	GCGC	4 cut(s)	159, 2268, 2665, 2686
BstKTI	GATC	9 cut(s)	25, 266, 280, 487, 892, 1063, 1414, 1638, 2116
BstMAI	GTCTC	6 cut(s)	256, 477, 852, 1300, 2238, 2382
BstMBI	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
BstNI	CCWGG	4 cut(s)	989, 2133, 2639, 2750
BstNSI	RCATGY	1 cut(s)	1816
BstPAI	GACNNNNGTC	1 cut(s)	1010
BstSCI	CCNGG	7 cut(s)	987, 2131, 2507, 2637, 2748, 2814, 2815
BstSLI	GKGCMC	1 cut(s)	1765
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	8 cut(s)	271, 325, 347, 1764, 1786, 2405, 2619, 3031
BstV2I	GAAGAC	3 cut(s)	533, 1085, 2182
BstX2I	RGATCY	2 cut(s)	263, 1411
BstXI	CCANNNNNNTGG	1 cut(s)	2764
BstYI	RGATCY	2 cut(s)	263, 1411
BsuI	GTATCC	2 cut(s)	1329, 2083
BsuRI	GGCC	8 cut(s)	194, 987, 1216, 2051, 2384, 2873, 2936, 3058
BtgI	CCRYGG	3 cut(s)	1440, 2187, 2823
BtsCI	GGATG	9 cut(s)	360, 784, 919, 1734, 2086, 2419, 3016, 3026, 3120
BtsI	GCAGTG	3 cut(s)	425, 1765, 2037
BtsIMutI	CAGTG	8 cut(s)	425, 1245, 1765, 1985, 2037, 2373, 3001, 3026
BveI	ACCTGC	1 cut(s)	2950
Cac8I	GCNNGC	9 cut(s)	110, 397, 432, 436, 568, 1247, 2106, 2161, 2500
CfoI	GCGC	4 cut(s)	159, 2268, 2665, 2686
Cfr10I	RCCGGY	1 cut(s)	2680
Cfr13I	GGNCC	5 cut(s)	193, 985, 1396, 2854, 2871
Cfr9I	CCCGGG	1 cut(s)	2815
CseI	GACGC	2 cut(s)	341, 2800
Csp6I	GTAC	3 cut(s)	12, 577, 2820
CviQI	GTAC	3 cut(s)	12, 577, 2820
DinI	GGCGCC	1 cut(s)	2685
DpnI	GATC	9 cut(s)	24, 265, 279, 486, 891, 1062, 1413, 1637, 2115
DpnII	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
DraIII	CACNNNGTG	2 cut(s)	440, 2847
DriI	GACNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	2382, 3056
Eam1104I	CTCTTC	5 cut(s)	372, 1692, 1862, 2010, 3073
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	5 cut(s)	372, 1692, 1862, 2010, 3073
Ecl136II	GAGCTC	1 cut(s)	2086
Eco130I	CCWWGG	8 cut(s)	595, 1440, 2187, 2666, 2687, 2806, 2823, 2937
Eco24I	GRGCYC	3 cut(s)	929, 2088, 2695
Eco31I	GGTCTC	4 cut(s)	256, 477, 852, 1300
Eco32I	GATATC	2 cut(s)	816, 2217
Eco47I	GGWCC	2 cut(s)	1396, 2854
Eco47III	AGCGCT	1 cut(s)	2267
Eco53kI	GAGCTC	1 cut(s)	2086
Eco57I	CTGAAG	2 cut(s)	54, 693
Eco88I	CYCGRG	1 cut(s)	2815
EcoICRI	GAGCTC	1 cut(s)	2086
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO109I	RGGNCCY	2 cut(s)	193, 2854
EcoRII	CCWGG	4 cut(s)	987, 2131, 2637, 2748
EcoRV	GATATC	2 cut(s)	816, 2217
EcoT14I	CCWWGG	8 cut(s)	595, 1440, 2187, 2666, 2687, 2806, 2823, 2937
EcoT22I	ATGCAT	2 cut(s)	1798, 2541
EcoT38I	GRGCYC	3 cut(s)	929, 2088, 2695
EgeI	GGCGCC	1 cut(s)	2685
EheI	GGCGCC	1 cut(s)	2685
ErhI	CCWWGG	8 cut(s)	595, 1440, 2187, 2666, 2687, 2806, 2823, 2937
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 2004, 2036
FaqI	GGGAC	4 cut(s)	255, 1458, 2561, 2798
FauNDI	CATATG	2 cut(s)	1782, 1927
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	9 cut(s)	347, 791, 926, 1721, 2093, 2426, 3013, 3023, 3127
FriOI	GRGCYC	3 cut(s)	929, 2088, 2695
FspBI	CTAG	8 cut(s)	596, 801, 1181, 1476, 2325, 2516, 2603, 2990
GlaI	GCGC	4 cut(s)	158, 2267, 2664, 2685
GsaI	CCCAGC	2 cut(s)	609, 1613
GsuI	CTGGAG	1 cut(s)	2740
HaeII	RGCGCY	3 cut(s)	2269, 2666, 2687
HaeIII	GGCC	8 cut(s)	194, 987, 1216, 2051, 2384, 2873, 2936, 3058
HapII	CCGG	5 cut(s)	329, 2052, 2508, 2681, 2816
HgaI	GACGC	2 cut(s)	341, 2800
HhaI	GCGC	4 cut(s)	159, 2268, 2665, 2686
Hin1I	GRCGYC	2 cut(s)	2684, 2811
Hin6I	GCGC	4 cut(s)	157, 2266, 2663, 2684
HinP1I	GCGC	4 cut(s)	157, 2266, 2663, 2684
HincII	GTYRAC	1 cut(s)	2310
HindII	GTYRAC	1 cut(s)	2310
HindIII	AAGCTT	5 cut(s)	27, 1092, 2037, 2166, 2249
HpaI	GTTAAC	1 cut(s)	2310
HpaII	CCGG	5 cut(s)	329, 2052, 2508, 2681, 2816
Hpy166II	GTNNAC	5 cut(s)	579, 1763, 1820, 2310, 2584
Hpy8I	GTNNAC	5 cut(s)	579, 1763, 1820, 2310, 2584
HpyCH4IV	ACGT	2 cut(s)	1588, 2522
HpySE526I	ACGT	2 cut(s)	1588, 2522
Hsp92I	GRCGYC	2 cut(s)	2684, 2811
HspAI	GCGC	4 cut(s)	157, 2266, 2663, 2684
KasI	GGCGCC	1 cut(s)	2683
KpnI	GGTACC	1 cut(s)	2823
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	2310
Kzo9I	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
LguI	GCTCTTC	1 cut(s)	2010
LmnI	GCTCC	3 cut(s)	2263, 2370, 2641
Lsp1109I	GCAGC	8 cut(s)	271, 325, 347, 1764, 1786, 2405, 2619, 3031
LweI	GCATC	8 cut(s)	1029, 1743, 1783, 1805, 1991, 2526, 3001, 3035
MaeI	CTAG	8 cut(s)	596, 801, 1181, 1476, 2325, 2516, 2603, 2990
MaeII	ACGT	2 cut(s)	1588, 2522
MalI	GATC	9 cut(s)	24, 265, 279, 486, 891, 1062, 1413, 1637, 2115
MbiI	CCGCTC	1 cut(s)	806
MboI	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	263, 1411
MhlI	GDGCHC	7 cut(s)	436, 929, 1765, 2088, 2375, 2695, 3106
MlsI	TGGCCA	1 cut(s)	2384
MluNI	TGGCCA	1 cut(s)	2384
Mly113I	GGCGCC	1 cut(s)	2684
MlyI	GAGTC	8 cut(s)	651, 1075, 1440, 1559, 2004, 2172, 2543, 2665
MmeI	TCCRAC	3 cut(s)	341, 2329, 2988
Mox20I	TGGCCA	1 cut(s)	2384
Mph1103I	ATGCAT	2 cut(s)	1798, 2541
MroXI	GAANNNNTTC	2 cut(s)	378, 1259
MscI	TGGCCA	1 cut(s)	2384
MseI	TTAA	9 cut(s)	1535, 1878, 1890, 2022, 2127, 2270, 2309, 2409, 2859
MslI	CAYNNNNRTG	8 cut(s)	234, 492, 663, 1739, 1785, 1827, 2378, 2960
Msp20I	TGGCCA	1 cut(s)	2384
MspA1I	CMGCKG	4 cut(s)	120, 338, 605, 1777
MspI	CCGG	5 cut(s)	329, 2052, 2508, 2681, 2816
MspR9I	CCNGG	7 cut(s)	989, 2133, 2509, 2639, 2750, 2816, 2817
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	3 cut(s)	427, 1353, 2539
MvaI	CCWGG	4 cut(s)	989, 2133, 2639, 2750
MvnI	CGCG	1 cut(s)	438
NarI	GGCGCC	1 cut(s)	2684
NciI	CCSGG	3 cut(s)	2509, 2816, 2817
NcoI	CCATGG	3 cut(s)	1440, 2187, 2823
NdeI	CATATG	2 cut(s)	1782, 1927
NdeII	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
NlaIV	GGNNCC	6 cut(s)	195, 265, 2429, 2643, 2685, 2821
NmuCI	GTSAC	6 cut(s)	171, 1003, 1051, 1435, 2095, 2282
NsiI	ATGCAT	2 cut(s)	1798, 2541
NspI	RCATGY	1 cut(s)	1816
NspV	TTCGAA	2 cut(s)	3076, 3174
PaqCI	CACCTGC	1 cut(s)	2950
PciI	ACATGT	1 cut(s)	1812
PciSI	GCTCTTC	1 cut(s)	2010
PctI	GAATGC	3 cut(s)	427, 1353, 2539
PdmI	GAANNNNTTC	2 cut(s)	378, 1259
PfeI	GAWTC	6 cut(s)	797, 1420, 1619, 2121, 2352, 3176
PflFI	GACNNNGTC	1 cut(s)	1587
PleI	GAGTC	8 cut(s)	650, 1075, 1440, 1558, 2003, 2172, 2543, 2665
PluTI	GGCGCC	1 cut(s)	2687
PpsI	GAGTC	8 cut(s)	650, 1075, 1440, 1558, 2003, 2172, 2543, 2665
PpuMI	RGGWCCY	1 cut(s)	2854
PscI	ACATGT	1 cut(s)	1812
PshAI	GACNNNNGTC	1 cut(s)	1010
PsiI	TTATAA	3 cut(s)	1688, 1827, 2705
Psp124BI	GAGCTC	1 cut(s)	2088
Psp1406I	AACGTT	1 cut(s)	2522
Psp5II	RGGWCCY	1 cut(s)	2854
Psp6I	CCWGG	4 cut(s)	987, 2131, 2637, 2748
PspFI	CCCAGC	2 cut(s)	605, 1609
PspGI	CCWGG	4 cut(s)	987, 2131, 2637, 2748
PspN4I	GGNNCC	6 cut(s)	195, 265, 2429, 2643, 2685, 2821
PspPI	GGNCC	5 cut(s)	193, 985, 1396, 2854, 2871
PspPPI	RGGWCCY	1 cut(s)	2854
PsuI	RGATCY	2 cut(s)	263, 1411
PsyI	GACNNNGTC	1 cut(s)	1587
PvuII	CAGCTG	3 cut(s)	338, 605, 1777
RsaI	GTAC	3 cut(s)	13, 578, 2821
RsaNI	GTAC	3 cut(s)	12, 577, 2820
RseI	CAYNNNNRTG	8 cut(s)	234, 492, 663, 1739, 1785, 1827, 2378, 2960
SacI	GAGCTC	1 cut(s)	2088
SapI	GCTCTTC	1 cut(s)	2010
SaqAI	TTAA	9 cut(s)	1535, 1878, 1890, 2022, 2127, 2270, 2309, 2409, 2859
Sau3AI	GATC	9 cut(s)	22, 263, 277, 484, 889, 1060, 1411, 1635, 2113
Sau96I	GGNCC	5 cut(s)	193, 985, 1396, 2854, 2871
SchI	GAGTC	8 cut(s)	651, 1075, 1440, 1559, 2004, 2172, 2543, 2665
ScrFI	CCNGG	7 cut(s)	989, 2133, 2509, 2639, 2750, 2816, 2817
SduI	GDGCHC	7 cut(s)	436, 929, 1765, 2088, 2375, 2695, 3106
SfaNI	GCATC	8 cut(s)	1029, 1743, 1783, 1805, 1991, 2526, 3001, 3035
SfoI	GGCGCC	1 cut(s)	2685
SfuI	TTCGAA	2 cut(s)	3076, 3174
SinI	GGWCC	2 cut(s)	1396, 2854
SmaI	CCCGGG	1 cut(s)	2817
SmiMI	CAYNNNNRTG	8 cut(s)	234, 492, 663, 1739, 1785, 1827, 2378, 2960
SmlI	CTYRAG	3 cut(s)	1284, 2652, 2673
SmoI	CTYRAG	3 cut(s)	1284, 2652, 2673
SpeI	ACTAGT	2 cut(s)	1180, 1475
SsiI	CCGC	6 cut(s)	118, 181, 326, 438, 806, 2562
SspDI	GGCGCC	1 cut(s)	2683
SspI	AATATT	1 cut(s)	2836
SspMI	CTAG	8 cut(s)	596, 801, 1181, 1476, 2325, 2516, 2603, 2990
SstI	GAGCTC	1 cut(s)	2088
StyD4I	CCNGG	7 cut(s)	987, 2131, 2507, 2637, 2748, 2814, 2815
StyI	CCWWGG	8 cut(s)	595, 1440, 2187, 2666, 2687, 2806, 2823, 2937
TaiI	ACGT	2 cut(s)	1591, 2525
TaqI	TCGA	6 cut(s)	50, 994, 1263, 1634, 3076, 3174
TaqII	GACCGA	1 cut(s)	1933
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	120, 328
TfiI	GAWTC	6 cut(s)	797, 1420, 1619, 2121, 2352, 3176
Tru1I	TTAA	9 cut(s)	1535, 1878, 1890, 2022, 2127, 2270, 2309, 2409, 2859
Tru9I	TTAA	9 cut(s)	1535, 1878, 1890, 2022, 2127, 2270, 2309, 2409, 2859
TscAI	CASTG	8 cut(s)	432, 1245, 1765, 1992, 2037, 2380, 3001, 3026
TseFI	GTSAC	6 cut(s)	171, 1003, 1051, 1435, 2095, 2282
TseI	GCWGC	8 cut(s)	284, 335, 338, 1774, 1777, 2418, 2607, 3044
Tsp45I	GTSAC	6 cut(s)	171, 1003, 1051, 1435, 2095, 2282
TspMI	CCCGGG	1 cut(s)	2815
TspRI	CASTG	8 cut(s)	432, 1245, 1765, 1992, 2037, 2380, 3001, 3026
Tth111I	GACNNNGTC	1 cut(s)	1587
VneI	GTGCAC	1 cut(s)	1761
VpaK11BI	GGWCC	2 cut(s)	1396, 2854
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	6 cut(s)	626, 767, 1860, 1955, 2484, 3085
XbaI	TCTAGA	1 cut(s)	800
XceI	RCATGY	1 cut(s)	1816
XmaI	CCCGGG	1 cut(s)	2815
XmaJI	CCTAGG	1 cut(s)	595
XmnI	GAANNNNTTC	2 cut(s)	378, 1259
XspI	CTAG	8 cut(s)	596, 801, 1181, 1476, 2325, 2516, 2603, 2990
Zsp2I	ATGCAT	2 cut(s)	1798, 2541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.