FvH4_6g48260

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36377987 .. 36379441
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48260.t1

Sequence Viewer

Length: 246 bp
ATGGGTCCTCCTTGGTTTCTTAGAATTCTCACGGTTTCTTGCTTTCTGGCTCTGTTTTTCTCTCAAGGTTTTGGGAGAAATTTGATGGAGAGAGGTGATCAGCATGGGGACTCTTCATTCCCAATAGAGGAAATTGATCAAAGTGTTAGGAAGATGTATGAAGTGATGGACTATTCAGATCCGGAGCCGAATGTGAACCCAAGAACAGGGTACATCTTCACCCCTCCTCCTCAGCCCAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

4.64

Isoelectric Point (pI)

63.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15265 AT5G15265
fragaria_vesca FvH4_6g48260
malus_domestica MD00G1125200.v1.1 MD09G1052600.v1.1
prunus_persica Prupe.3G266100_v2.0.a1 Prupe.3G266100_v2.0.a1
pyrus_communis pycom17g04810
rosa_chinensis RchiOBHm_Chr2g0167761
rosa_multiflora Rmu_co8387187.1_g000001 Rmu_sc0042171.1_g000002
rosa_roxburghii Rroxscaffold_2G00083280
rosa_rugosa Rorug02G0531900
rosa_samantha Rh2BG611500
rosa_wichuraiana Rw2G049880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 24, 79
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 127, 206
AlwI GGATC 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 181
ApoI RAATTY 2 cut(s) 24, 79
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 107, 211
AvaII GGWCC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 2 cut(s) 79, 160
BclI TGATCA 2 cut(s) 97, 136
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 186
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 206
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 127, 206
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 216, 219
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 127, 206
BsmFI GGGAC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 97, 136, 178
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 6, 186
BspPI GGATC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 3 cut(s) 97, 136, 178
BssT1I CCWWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 20, 231
BstKTI GATC 3 cut(s) 100, 139, 181
BstMBI GATC 3 cut(s) 97, 136, 178
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 104
CviJI RGCY 3 cut(s) 50, 187, 235
CviKI_1 RGCY 3 cut(s) 50, 187, 235
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 20, 231
DpnI GATC 3 cut(s) 99, 138, 180
DpnII GATC 3 cut(s) 97, 136, 178
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 159
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 103
FbaI TGATCA 2 cut(s) 97, 136
HapII CCGG 1 cut(s) 182
Hin1II CATG 1 cut(s) 107
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 107, 211
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 20, 231
Hsp92II CATG 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 181
Ksp22I TGATCA 2 cut(s) 97, 136
Kzo9I GATC 3 cut(s) 97, 136, 178
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 3 cut(s) 32, 192, 195
MalI GATC 3 cut(s) 99, 138, 180
MboI GATC 3 cut(s) 97, 136, 178
MboII GAAGA 3 cut(s) 105, 163, 208
MflI RGATCY 1 cut(s) 178
MluCI AATT 3 cut(s) 24, 79, 132
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 6 cut(s) 18, 86, 121, 234, 237, 240
MroI TCCGGA 1 cut(s) 181
MspI CCGG 1 cut(s) 182
NdeII GATC 3 cut(s) 97, 136, 178
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 6, 186
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 6, 186
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
Sau3AI GATC 3 cut(s) 97, 136, 178
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 104
SetI ASST 2 cut(s) 70, 97
SgeI CNNG 9 cut(s) 24, 43, 51, 59, 77, 116, 194, 213, 219
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 24, 79, 132
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 34
TasI AATT 3 cut(s) 24, 79, 132
TspDTI ATGAA 2 cut(s) 105, 174
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 2 cut(s) 24, 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.