FvH4_6g51560

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0022259
Physical Location & Seq
Forward (+)
38211286 .. 38213307
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51560.t1

Sequence Viewer

Length: 423 bp
ATGCAAAACCTGAGATCAAAGTTCTGCCCACATCTCCTTCTCAGATTTTTACACAGCATATGGGATGTCATCAGGAAGCATGTTCTGGATTACACTGTAGACCCAAATCTTGCTCAGAGCCTTTGCTTTCTTCTGAGGTGGGGTGCAATGGACACTGAAGCACATCCTGAAGTTTCAAAAGACATCTTACAGATCTTATGGAGTGTTAGCATCTCTACTCATCCTGGTCTGGAGACACAGTGGGCAAAGGCAAGAGCCTATTCCTTTGAGGCCATGGCCCAATTTGAGGTATCACATACTGAACAAACAATTCAAGATTTCAAGAAAAGGAATCTGGAGTTGCTTTCTTGTGAATCAAACATCACTGTACTAAATGCCATGGAAGAACTTCTAGTCAAGATAATAACACACGAGCACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

141

Amino Acids

16.3

Weight (kDa)

6.03

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 18 - 87 8.7e-12 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g51540 FvH4_6g51560
pyrus_communis pycom17g02690
rosa_samantha Rh2AG643700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 177, 189
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 177, 314, 322
AjnI CCWGG 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 2 cut(s) 270, 276
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 96
BglII AGATCT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 2 cut(s) 251, 356
BsaJI CCNNGG 2 cut(s) 273, 378
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 273, 378
BseGI GGATG 3 cut(s) 70, 163, 220
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 3 cut(s) 55, 125, 128
BshFI GGCC 2 cut(s) 272, 278
BsiHKAI GWGCWC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 272, 278
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 2 cut(s) 14, 192
Bsp19I CCATGG 2 cut(s) 273, 378
BspANI GGCC 2 cut(s) 272, 278
BspCNI CTCAG 3 cut(s) 54, 126, 127
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 273, 378
BssMI GATC 2 cut(s) 14, 192
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 2 cut(s) 273, 378
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 97, 240, 367
BstDEI CTNAG 4 cut(s) 11, 41, 114, 134
BstDSI CCRYGG 2 cut(s) 273, 378
BstF5I GGATG 3 cut(s) 70, 163, 220
BstKTI GATC 2 cut(s) 17, 195
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 14, 192
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 2 cut(s) 272, 278
BtgI CCRYGG 2 cut(s) 273, 378
BtsCI GGATG 3 cut(s) 70, 163, 220
BtsIMutI CAGTG 4 cut(s) 93, 153, 245, 363
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 80, 274, 379
CviJI RGCY 4 cut(s) 120, 257, 272, 278
CviKI_1 RGCY 4 cut(s) 120, 257, 272, 278
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 4 cut(s) 11, 41, 114, 134
DpnI GATC 2 cut(s) 16, 194
DpnII GATC 2 cut(s) 14, 192
Eco130I CCWWGG 2 cut(s) 273, 378
Eco57I CTGAAG 2 cut(s) 177, 189
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 273, 378
ErhI CCWWGG 2 cut(s) 273, 378
FaeI CATG 3 cut(s) 83, 277, 382
FaiI YATR 7 cut(s) 59, 61, 81, 199, 275, 297, 380
FatI CATG 3 cut(s) 79, 273, 378
FauNDI CATATG 1 cut(s) 59
FblI GTMKAC 1 cut(s) 99
FokI GGATG 3 cut(s) 77, 150, 207
FspBI CTAG 1 cut(s) 392
GsuI CTGGAG 2 cut(s) 251, 356
HaeIII GGCC 2 cut(s) 272, 278
Hin1II CATG 3 cut(s) 83, 277, 382
HinfI GANTC 2 cut(s) 331, 353
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 44, 117, 135
Hpy188III TCNNGA 8 cut(s) 73, 86, 167, 230, 314, 322, 335, 397
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 3 cut(s) 97, 240, 367
HpyCH4V TGCA 2 cut(s) 4, 146
HpyF3I CTNAG 4 cut(s) 11, 41, 114, 134
Hsp92II CATG 3 cut(s) 83, 277, 382
Kzo9I GATC 2 cut(s) 14, 192
LpnPI CCDG 8 cut(s) 23, 58, 71, 180, 210, 215, 237, 320
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 392
MalI GATC 2 cut(s) 16, 194
MboI GATC 2 cut(s) 14, 192
MboII GAAGA 2 cut(s) 122, 395
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 2 cut(s) 281, 309
MnlI CCTC 3 cut(s) 129, 262, 280
MroXI GAANNNNTTC 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NcoI CCATGG 2 cut(s) 273, 378
NdeI CATATG 1 cut(s) 59
NdeII GATC 2 cut(s) 14, 192
NlaIII CATG 3 cut(s) 83, 277, 382
NspI RCATGY 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 331, 353
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 14, 192
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 417
SetI ASST 4 cut(s) 12, 140, 291, 420
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 281, 309
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 2 cut(s) 273, 378
TaaI ACNGT 3 cut(s) 97, 240, 367
TasI AATT 2 cut(s) 281, 309
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 2 cut(s) 331, 353
TscAI CASTG 4 cut(s) 100, 160, 245, 370
TspRI CASTG 4 cut(s) 100, 160, 245, 370
XceI RCATGY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.