Rh2AG643700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0022259
Physical Location & Seq
Forward (+)
86558172 .. 86562329
4158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG643700.1

Sequence Viewer

Length: 1047 bp
ATGCGAAACCAACTTTACATGCGACAGCCATTCGCTTGCTTTGTCAGACCTGGGAGACCAATGACCGTGCCTTCGGGTTTGCAGGGAGTGTTGGTTCCAAAAAGGTTCACTGACTTAAAGGCTGAAAGAAATATATGCATCAGTATGGCTGCATCAGTTCGGGATGTTTGCAGAAAAAATCCTGATAGGGGAGTGGACCTCATCTTATCTGTCTCGGCTTGCATTGAGAACAATGATCCGATTATTCAAGCTGTTGGTTTTCAAAGTCTTGCCCACCTTTGTGAAGCTGACGTAATTGATTTTTACACAGCCTGGGATGTCATCAGGAAGCATGTTCTGAACTACACTGTAGACCCAAATCTTGCTCAGAGCCTTTGCCTTCTTCTGAGGTGGGGTGCAATGGACGCTGAAGCACATTCTGAAGCCTCAAAAAACATCTTGCAGATCTTAGGGAGTGTTAGCATTTCTACTCATCCTGGTCTGGAGACACAGTGGGCAAAGGCAAGGGCCTCTTCCTTTAAGGCCTTGGCTCAATTTGAGGTATCACATATTGAACAAAAAATTCAAGATTTCAAGAATAGGAACCTGGAGTTGCTTTCTTGTGAAGCAAACATTACTGTACTGAATGCCATGGAAGAACTTCTGGTCAAGATAATAACATATGAGCACCTCACAAAGCGAGGATTGGTTAAGGAGAAAAGAGTTGCAGGAAGTAAGATCGAGAAGCTGCTGGATGTGTTTCCCCAGGTGATCTTTTCTTCAGGGAAACGAAGTGATGCAAGGGAGTTACCTGGTGCAGCCTTGCTGTGTCTTTCCTTTACTCCTAAAGATGTGAACACCCAAGGGCTATCAAGGGGATTCCGAGATATACATGGTGGATATGAGAATGCTCTGGTGGAACTAGCTTCCTCCCTTCAGCTCTCAAGAAATATTTTTATTGCCCTTATTTCACTGGAATCATGGAAATCCTTCATGCGGCGTTGGCTGAGGGCTGATATCTTGTCCTTTGATGCTAAAGTGTCATCTATCGTCTTGGAAAACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

348

Amino Acids

38.97

Weight (kDa)

8.73

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 25 - 175 6e-39 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g51540 FvH4_6g51560
pyrus_communis pycom17g02690
rosa_samantha Rh2AG643700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AciI CCGC 1 cut(s) 976
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 561
AcuI CTGAAG 4 cut(s) 429, 441, 744, 899
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 188, 975
AgsI TTSAA 5 cut(s) 248, 263, 554, 566, 574
AjnI CCWGG 6 cut(s) 49, 311, 475, 585, 744, 790
AleI CACNNNNGTG 1 cut(s) 279
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 5 cut(s) 251, 287, 727, 905, 919
AluI AGCT 5 cut(s) 251, 287, 727, 905, 919
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 3 cut(s) 49, 217, 479
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 507, 522
ApeKI GCWGC 3 cut(s) 149, 727, 797
ApoI RAATTY 1 cut(s) 561
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
Asp700I GAANNNNTTC 2 cut(s) 639, 968
AspS9I GGNCC 2 cut(s) 196, 507
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 669
BbvCI CCTCAGC 1 cut(s) 986
BbvI GCAGC 3 cut(s) 136, 714, 809
BciT130I CCWGG 6 cut(s) 51, 313, 477, 587, 746, 792
BcoDI GTCTC 3 cut(s) 49, 217, 479
BfaI CTAG 1 cut(s) 902
BfmI CTRYAG 1 cut(s) 348
BglII AGATCT 1 cut(s) 444
BisI GCNGC 4 cut(s) 150, 728, 798, 977
BlsI GCNGC 4 cut(s) 151, 729, 799, 978
Bme1390I CCNGG 6 cut(s) 51, 313, 477, 587, 746, 792
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 196, 507
BmiI GGNNCC 2 cut(s) 96, 584
BmrFI CCNGG 6 cut(s) 51, 313, 477, 587, 746, 792
BmsI GCATC 4 cut(s) 147, 161, 766, 1000
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 2 cut(s) 503, 608
Bpu10I CCTNAGC 1 cut(s) 986
BpuEI CTTGAG 1 cut(s) 907
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 6 cut(s) 50, 312, 525, 630, 744, 841
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 975
Bse1I ACTGG 1 cut(s) 957
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 6 cut(s) 51, 313, 477, 587, 746, 792
BseDI CCNNGG 6 cut(s) 50, 312, 525, 630, 744, 841
BseGI GGATG 4 cut(s) 169, 322, 472, 739
BseLI CCNNNNNNNGG 2 cut(s) 188, 975
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 3 cut(s) 377, 380, 977
BseNI ACTGG 1 cut(s) 957
BseXI GCAGC 3 cut(s) 136, 714, 809
BsgI GTGCAG 1 cut(s) 816
BshFI GGCC 2 cut(s) 509, 524
BsiHKAI GWGCWC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 188, 975
BsmAI GTCTC 3 cut(s) 49, 217, 479
BsmI GAATGC 2 cut(s) 631, 892
BsnI GGCC 2 cut(s) 509, 524
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 235, 444, 717, 750
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 1 cut(s) 976
BspANI GGCC 2 cut(s) 509, 524
BspCNI CTCAG 3 cut(s) 378, 379, 978
BspLI GGNNCC 2 cut(s) 96, 584
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 1 cut(s) 957
BssECI CCNNGG 6 cut(s) 50, 312, 525, 630, 744, 841
BssMI GATC 4 cut(s) 235, 444, 717, 750
BssT1I CCWWGG 3 cut(s) 525, 630, 841
Bst2UI CCWGG 6 cut(s) 51, 313, 477, 587, 746, 792
Bst4CI ACNGT 4 cut(s) 67, 349, 492, 619
Bst6I CTCTTC 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 37, 220
BstDEI CTNAG 4 cut(s) 366, 386, 448, 986
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 4 cut(s) 169, 322, 472, 739
BstKTI GATC 4 cut(s) 238, 447, 720, 753
BstMAI GTCTC 3 cut(s) 49, 217, 479
BstMBI GATC 4 cut(s) 235, 444, 717, 750
BstMWI GCNNNNNNNGC 2 cut(s) 404, 982
BstNI CCWGG 6 cut(s) 51, 313, 477, 587, 746, 792
BstNSI RCATGY 2 cut(s) 22, 335
BstSCI CCNGG 6 cut(s) 49, 311, 475, 585, 744, 790
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 136, 714, 809
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuRI GGCC 2 cut(s) 509, 524
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 4 cut(s) 169, 322, 472, 739
BtsIMutI CAGTG 4 cut(s) 108, 345, 497, 950
Cac8I GCNNGC 2 cut(s) 37, 220
Cfr13I GGNCC 2 cut(s) 196, 507
CseI GACGC 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 790
Csp6I GTAC 1 cut(s) 620
CviAII CATG 6 cut(s) 19, 332, 631, 872, 960, 973
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 4 cut(s) 366, 386, 448, 986
DpnI GATC 4 cut(s) 237, 446, 719, 752
DpnII GATC 4 cut(s) 235, 444, 717, 750
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 525, 630, 841
Eco147I AGGCCT 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 4 cut(s) 429, 441, 744, 899
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 6 cut(s) 49, 311, 475, 585, 744, 790
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 3 cut(s) 525, 630, 841
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 3 cut(s) 525, 630, 841
FaeI CATG 6 cut(s) 22, 335, 634, 875, 963, 976
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FatI CATG 6 cut(s) 18, 331, 630, 871, 959, 972
FauNDI CATATG 1 cut(s) 661
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 150, 728, 798, 977
FokI GGATG 4 cut(s) 176, 329, 459, 746
Fsp4HI GCNGC 4 cut(s) 150, 728, 798, 977
FspBI CTAG 1 cut(s) 902
GluI GCNGC 4 cut(s) 150, 728, 798, 977
GsuI CTGGAG 2 cut(s) 503, 608
HaeIII GGCC 2 cut(s) 509, 524
HgaI GACGC 1 cut(s) 413
Hin1II CATG 6 cut(s) 22, 335, 634, 875, 963, 976
HinfI GANTC 2 cut(s) 858, 956
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 4 cut(s) 108, 196, 352, 835
Hpy188I TCNGA 7 cut(s) 47, 240, 339, 369, 387, 421, 863
Hpy188III TCNNGA 9 cut(s) 161, 182, 325, 482, 566, 574, 649, 721, 924
Hpy8I GTNNAC 4 cut(s) 108, 196, 352, 835
HpyAV CCTTC 4 cut(s) 81, 389, 923, 979
HpyCH4III ACNGT 4 cut(s) 67, 349, 492, 619
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 982
HpyF3I CTNAG 4 cut(s) 366, 386, 448, 986
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 6 cut(s) 22, 335, 634, 875, 963, 976
Kzo9I GATC 4 cut(s) 235, 444, 717, 750
Lsp1109I GCAGC 3 cut(s) 136, 714, 809
LweI GCATC 4 cut(s) 147, 161, 766, 1000
MabI ACCWGGT 1 cut(s) 790
MaeI CTAG 1 cut(s) 902
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 786
MalI GATC 4 cut(s) 237, 446, 719, 752
MboI GATC 4 cut(s) 235, 444, 717, 750
MboII GAAGA 4 cut(s) 374, 504, 647, 750
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 3 cut(s) 294, 533, 561
MnlI CCTC 9 cut(s) 209, 381, 436, 520, 532, 674, 680, 919, 981
Mph1103I ATGCAT 1 cut(s) 140
MroXI GAANNNNTTC 2 cut(s) 639, 968
MseI TTAA 3 cut(s) 116, 519, 690
MslI CAYNNNNRTG 2 cut(s) 143, 279
MspR9I CCNGG 6 cut(s) 51, 313, 477, 587, 746, 792
Mva1269I GAATGC 2 cut(s) 631, 892
MvaI CCWGG 6 cut(s) 51, 313, 477, 587, 746, 792
MwoI GCNNNNNNNGC 2 cut(s) 404, 982
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 661
NdeII GATC 4 cut(s) 235, 444, 717, 750
NlaIII CATG 6 cut(s) 22, 335, 634, 875, 963, 976
NlaIV GGNNCC 2 cut(s) 96, 584
NmeAIII GCCGAG 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 2 cut(s) 22, 335
OliI CACNNNNGTG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 524
PctI GAATGC 2 cut(s) 631, 892
PdmI GAANNNNTTC 2 cut(s) 639, 968
PfeI GAWTC 2 cut(s) 858, 956
PkrI GCNGC 4 cut(s) 151, 729, 799, 978
Psp6I CCWGG 6 cut(s) 49, 311, 475, 585, 744, 790
PspGI CCWGG 6 cut(s) 49, 311, 475, 585, 744, 790
PspN4I GGNNCC 2 cut(s) 96, 584
PspPI GGNCC 2 cut(s) 196, 507
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
RseI CAYNNNNRTG 2 cut(s) 143, 279
SaqAI TTAA 3 cut(s) 116, 519, 690
SatI GCNGC 4 cut(s) 150, 728, 798, 977
Sau3AI GATC 4 cut(s) 235, 444, 717, 750
Sau96I GGNCC 2 cut(s) 196, 507
ScrFI CCNGG 6 cut(s) 51, 313, 477, 587, 746, 792
SduI GDGCHC 1 cut(s) 669
SexAI ACCWGGT 1 cut(s) 790
SfaNI GCATC 4 cut(s) 147, 161, 766, 1000
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 143, 279
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 3 cut(s) 294, 533, 561
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 1 cut(s) 976
SspI AATATT 1 cut(s) 931
SspMI CTAG 1 cut(s) 902
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 6 cut(s) 49, 311, 475, 585, 744, 790
StyI CCWWGG 3 cut(s) 525, 630, 841
TaaI ACNGT 4 cut(s) 67, 349, 492, 619
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 720
TasI AATT 3 cut(s) 294, 533, 561
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 979
TfiI GAWTC 2 cut(s) 858, 956
Tru1I TTAA 3 cut(s) 116, 519, 690
Tru9I TTAA 3 cut(s) 116, 519, 690
TscAI CASTG 4 cut(s) 115, 352, 497, 957
TseI GCWGC 3 cut(s) 149, 727, 797
TspDTI ATGAA 1 cut(s) 961
TspRI CASTG 4 cut(s) 115, 352, 497, 957
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 561
XceI RCATGY 2 cut(s) 22, 335
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 2 cut(s) 639, 968
XspI CTAG 1 cut(s) 902
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.