Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0024196

Physical Location & Seq

Genomic Coordinates Reverse (-)

2700265 .. 2701547

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATGGTTGCGGAGCGGGACTGCCCCCATTTGCTGTTCTACGGGCCTCCCGGCTCCGGCAAGAAAACCCTAATCATCGCCCTTATTCGTCAGATTTTTGGACCCAGCGCGGACAAGGTGAAGGTGGAAAACAAGACATGGAAAGTTGATGCTGGGAGTAGAACTATTGACATCCAGCTGACTACATTATCAAGCAACAATCACTTTGAACTAAACCCCAGTGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAGATCATTAAGGAAATTGCTAAAAATAGACCCTTTGACACAAAAGGAAAAAAGGGATATCAAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

109

Amino Acids

12.16

Weight (kDa)

9.3

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02410 FvH4_7g06980
pyrus_communis	pycom04g03620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	1 cut(s)	110
AciI	CCGC	3 cut(s)	11, 16, 110
AcsI	RAATTY	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	209, 254
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	44, 101
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	44, 101
BmiI	GGNNCC	2 cut(s)	55, 103
BmrFI	CCNGG	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	139, 214
BmuI	ACTGGG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	219
BseYI	CCCAGC	2 cut(s)	104, 152
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	51, 57
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	11, 16, 110
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	55, 103
BsrBI	CCGCTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	44, 101
CviAII	CATG	1 cut(s)	138
CviJI	RGCY	4 cut(s)	46, 54, 178, 231
CviKI_1	RGCY	4 cut(s)	46, 54, 178, 231
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	314
FaeI	CATG	1 cut(s)	141
FaiI	YATR	1 cut(s)	139
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	137
FauI	CCCGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	109
GsaI	CCCAGC	2 cut(s)	108, 156
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	51, 57
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	51, 57
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	236, 254
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	13, 59
LpnPI	CCDG	8 cut(s)	64, 70, 118, 138, 188, 213, 221, 232
LweI	GCATC	2 cut(s)	139, 214
MalI	GATC	1 cut(s)	260
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	1 cut(s)	258
MluCI	AATT	2 cut(s)	270, 318
MnlI	CCTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	2 cut(s)	51, 57
MspR9I	CCNGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	110
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	55, 103
PspFI	CCCAGC	2 cut(s)	104, 152
PspN4I	GGNNCC	2 cut(s)	55, 103
PspPI	GGNCC	2 cut(s)	44, 101
PvuII	CAGCTG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	2 cut(s)	44, 101
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	3 cut(s)	120, 126, 180
SfaNI	GCATC	2 cut(s)	139, 214
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	270, 318
SsiI	CCGC	3 cut(s)	11, 16, 110
StyD4I	CCNGG	1 cut(s)	49
TasI	AATT	2 cut(s)	270, 318
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	226
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.