Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0024196

Physical Location & Seq

Genomic Coordinates Forward (+)

3269362 .. 3271248

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTGTGGGTAGACAAGTACCGACCCAAAACCCTAGACCAGGCAATTGTCCACCAAGACATCGCCCAAAACCTCAAGAAACTCGTTGCAGAGCAGGATTGTCCCCATTTGCTCTTTTATGGCCCTTCTGGCTCCGGCAAGAAAACCCTCATCATCGCCCTCCTCCGTCAGGTTTTCGGTCCCAGCGCCGATAAGGTGAAAGTGGAAAATAGGGCATGGAAAGTTGATGCTGGGAGCAGAACCATTGATATAGAGTTGACTACATTGTCAAGCACAAACCATATTGAATTGAACCCCAGTGATGCAGGCTTTCAGGACAGATATATTGTCCAAGAGATAATTAAAGAAATGGCTAAAAATAGGCCCATTGACACAAAAGGGAAAAAAGGATATAAAATCTTAGTGCTGAATGAAGTTGACAAGCTTTCAAGAGATCGGAAGAGCGCAGCATTCTCTTCGAAGAACTATGGAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.36

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	2 - 55	4.9e-06	Rad17 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024196)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02410 FvH4_7g06980
pyrus_communis	pycom04g03620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	40, 169
AgsI	TTSAA	3 cut(s)	287, 292, 429
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
AoxI	GGCC	2 cut(s)	121, 362
ApeKI	GCWGC	1 cut(s)	446
AspLEI	GCGC	2 cut(s)	188, 446
AspS9I	GGNCC	3 cut(s)	122, 179, 363
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	122, 179, 363
BmiI	GGNNCC	2 cut(s)	133, 181
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	217, 292
BmuI	ACTGGG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 169
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	40, 169
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	2 cut(s)	182, 230
BshFI	GGCC	2 cut(s)	123, 364
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	87, 165
BslI	CCNNNNNNNGG	2 cut(s)	40, 169
BsmFI	GGGAC	2 cut(s)	87, 165
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	123, 364
Bsp119I	TTCGAA	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	123, 364
BspLI	GGNNCC	2 cut(s)	133, 181
BspQI	GCTCTTC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	434, 460
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	400
BstENI	CCTNNNNNAGG	2 cut(s)	38, 167
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 446
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	123, 364
BtgZI	GCGATG	2 cut(s)	46, 139
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	188, 446
Cfr13I	GGNCC	3 cut(s)	122, 179, 363
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	6 cut(s)	123, 132, 309, 353, 364, 424
CviKI_1	RGCY	6 cut(s)	123, 132, 309, 353, 364, 424
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	434, 460
EarI	CTCTTC	2 cut(s)	434, 460
Eco47I	GGWCC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	2 cut(s)	38, 167
EcoRII	CCWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	219
FaiI	YATR	8 cut(s)	120, 217, 251, 282, 324, 393, 468, 478
FaqI	GGGAC	2 cut(s)	87, 165
FatI	CATG	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	2 cut(s)	187, 445
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	2 cut(s)	186, 234
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	123, 364
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	2 cut(s)	188, 446
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	2 cut(s)	186, 444
HinP1I	GCGC	2 cut(s)	186, 444
HincII	GTYRAC	2 cut(s)	258, 418
HindII	GTYRAC	2 cut(s)	258, 418
HindIII	AAGCTT	1 cut(s)	422
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	4 cut(s)	13, 52, 258, 418
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	3 cut(s)	76, 314, 429
Hpy8I	GTNNAC	4 cut(s)	13, 52, 258, 418
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	89, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	2 cut(s)	186, 444
Kzo9I	GATC	1 cut(s)	433
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	2 cut(s)	137, 234
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	217, 292
MaeI	CTAG	1 cut(s)	35
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	447, 451, 472
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 287, 339
MnlI	CCTC	4 cut(s)	83, 158, 170, 173
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	133, 181
NspV	TTCGAA	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	434
PctI	GAATGC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	2 cut(s)	182, 230
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	133, 181
PspPI	GGNCC	3 cut(s)	122, 179, 363
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	3 cut(s)	122, 179, 363
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	4 cut(s)	75, 174, 198, 426
SfaNI	GCATC	2 cut(s)	217, 292
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	45, 287, 339
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	458
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	45, 287, 339
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	179
XagI	CCTNNNNNAGG	2 cut(s)	38, 167
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.