Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0024197

Physical Location & Seq

Genomic Coordinates Forward (+)

3173902 .. 3174941

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02842.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACAAAGGAGCAGGCCCTTCCATTGAAATAAGAACCTTCAAGCGGTATATGGGCCTGGGCCCAGAACTCTACAAAGACCCCGGACCCGGTTGCCCGACCCGATTCAGCTTAAGCTTGGCCAGTAATGGGGGCTGCTTCCGCCTCTCTTTGAATGAAGAAGAAAGCGAGGGACTTGTTCACAAGAAGCATCAGAACCTTCTTCACCGACCACCCGAAAATCATGGAACGACAACAGCAGCAGCAACAACGTTACAGTTACAACCCAACTCTGTGTTGGAATCCCGAGGTCGAATCTTACTTGTCCTAGGAGGAAGTAAATTTGGGGTTAGCCCTAAGTTTGTTCGCATTAGTATGCTGGATAAGGACCTTAACTTCAGTTTGTTTCTGAAGAGATTGTCCAAAATCCAGCATGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006952 GO:0007154 GO:0007275 GO:0008150 GO:0008483 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009888 GO:0009908 GO:0009958 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0012505 GO:0016020 GO:0016740 GO:0016769 GO:0019827 GO:0022414 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0050362 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070529 GO:0071496 GO:0080097 GO:0090567 GO:0090696 GO:0098542 GO:0098727 GO:0098827 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

141

Amino Acids

15.47

Weight (kDa)

9.69

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02842
pyrus_communis	pycom14g14600
rosa_roxburghii	Rroxscaffold_2G00095970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 142
AclI	AACGTT	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	361, 410
AfiI	CCNNNNNNNGG	3 cut(s)	45, 89, 129
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	29, 43, 154
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	111, 117
AluI	AGCT	2 cut(s)	111, 117
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	4 cut(s)	16, 55, 61, 120
ApaI	GGGCCC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	135, 239, 242
ApoI	RAATTY	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	307
AspS9I	GGNCC	6 cut(s)	17, 55, 61, 62, 86, 367
AsuC2I	CCSGG	2 cut(s)	84, 90
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	86, 367
AvrII	CCTAGG	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	122, 251, 254
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	84, 90
BfaI	CTAG	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	3 cut(s)	136, 240, 243
BlnI	CCTAGG	1 cut(s)	307
BlsI	GCNGC	3 cut(s)	137, 241, 244
Bme1390I	CCNGG	3 cut(s)	59, 84, 90
Bme18I	GGWCC	2 cut(s)	86, 367
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	6 cut(s)	17, 55, 61, 62, 86, 367
BmiI	GGNNCC	2 cut(s)	63, 88
BmrFI	CCNGG	3 cut(s)	59, 84, 90
BmsI	GCATC	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	84, 90
BsaJI	CCNNGG	4 cut(s)	58, 82, 286, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 89, 129
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	4 cut(s)	58, 82, 286, 307
BseLI	CCNNNNNNNGG	3 cut(s)	45, 89, 129
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	122, 251, 254
BshFI	GGCC	4 cut(s)	18, 57, 63, 122
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	84, 90
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	45, 89, 129
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	4 cut(s)	18, 57, 63, 122
BsoBI	CYCGRG	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	46, 142
BspANI	GGCC	4 cut(s)	18, 57, 63, 122
BspLI	GGNNCC	2 cut(s)	63, 88
BspTI	CTTAAG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	58, 82, 286, 307
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	57, 82, 88
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	122, 251, 254
BsuRI	GGCC	4 cut(s)	18, 57, 63, 122
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	6 cut(s)	17, 55, 61, 62, 86, 367
CviAII	CATG	2 cut(s)	224, 413
CviJI	RGCY	8 cut(s)	18, 57, 63, 111, 117, 122, 135, 333
CviKI_1	RGCY	8 cut(s)	18, 57, 63, 111, 117, 122, 135, 333
DdeI	CTNAG	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	86, 367
Eco57I	CTGAAG	2 cut(s)	361, 410
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	17, 367
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	227, 416
FaiI	YATR	5 cut(s)	51, 53, 225, 356, 414
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	223, 412
Fnu4HI	GCNGC	3 cut(s)	136, 240, 243
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	136, 240, 243
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	3 cut(s)	136, 240, 243
HaeIII	GGCC	4 cut(s)	18, 57, 63, 122
HapII	CCGG	2 cut(s)	84, 90
Hin1II	CATG	2 cut(s)	227, 416
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	3 cut(s)	105, 281, 294
HpaII	CCGG	2 cut(s)	84, 90
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	195, 390
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	30, 49, 209
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	227, 416
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	44, 71, 78, 97, 103, 136, 344
Lsp1109I	GCAGC	3 cut(s)	122, 251, 254
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	252, 258
MboII	GAAGA	4 cut(s)	170, 173, 194, 403
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	155, 163, 281, 305
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	113, 372
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	2 cut(s)	84, 90
MspR9I	CCNGG	3 cut(s)	59, 84, 90
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	84, 90
NlaIII	CATG	2 cut(s)	227, 416
NlaIV	GGNNCC	2 cut(s)	63, 88
PfeI	GAWTC	3 cut(s)	105, 281, 294
PkrI	GCNGC	3 cut(s)	137, 241, 244
PpuMI	RGGWCCY	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	63, 88
PspOMI	GGGCCC	1 cut(s)	61
PspPI	GGNCC	6 cut(s)	17, 55, 61, 62, 86, 367
PspPPI	RGGWCCY	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	113, 372
SatI	GCNGC	3 cut(s)	136, 240, 243
Sau96I	GGNCC	6 cut(s)	17, 55, 61, 62, 86, 367
ScrFI	CCNGG	3 cut(s)	59, 84, 90
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	41, 113, 119, 201, 254, 292, 372
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	86, 367
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	2 cut(s)	46, 142
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	57, 82, 88
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	105, 281, 294
Tru1I	TTAA	2 cut(s)	113, 372
Tru9I	TTAA	2 cut(s)	113, 372
TseI	GCWGC	3 cut(s)	135, 239, 242
TspDTI	ATGAA	1 cut(s)	171
Vha464I	CTTAAG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	86, 367
XapI	RAATTY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmaJI	CCTAGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.