Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024197

Physical Location & Seq

Genomic Coordinates Reverse (-)

17317269 .. 17317556

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTTACCTCTTTTGCAGCTTTCGCATGGCTAAAATGTGAGGACGATCACGTGGAAGATTGCGAGAGCTTCCTAAGAGGCTACAAGATATTAACAAGAGGAGGAAGGCATTTTGGAGTTGGTCCAAAGTACGTCCGCATAAGCATGTTGGATCGGGACAACATCTTCAACTTATTTGTTAAGCGACTGTCTGCTCGATCCAGTCATGACACAGCCGAACGCTATGTTCTTCCTCATGATGTTCTTTCGGCGCAAAGGTGGATGTGGACCTGTTGCAGAGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006952 GO:0007154 GO:0007275 GO:0008150 GO:0008483 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009888 GO:0009908 GO:0009958 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0012505 GO:0016020 GO:0016740 GO:0016769 GO:0019827 GO:0022414 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0050362 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070529 GO:0071496 GO:0080097 GO:0090567 GO:0090696 GO:0098542 GO:0098727 GO:0098827 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

96

Amino Acids

11.08

Weight (kDa)

8.82

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alliinase_C	PF04864	5 - 64	1.1e-16	Allinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02842
pyrus_communis	pycom14g14600
rosa_roxburghii	Rroxscaffold_2G00095970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	159, 192
AcvI	CACGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	2 cut(s)	20, 69
AluI	AGCT	2 cut(s)	20, 69
AlwI	GGATC	2 cut(s)	159, 192
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	122, 267
AvaII	GGWCC	2 cut(s)	122, 267
BbrPI	CACGTG	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	2 cut(s)	122, 267
BmgT120I	GGNCC	2 cut(s)	122, 267
BsaAI	YACGTR	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	46, 151, 197
BspACI	CCGC	1 cut(s)	136
BspHI	TCATGA	2 cut(s)	205, 235
BspPI	GGATC	2 cut(s)	159, 192
BsrI	ACTGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	46, 151, 197
Bst4CI	ACNGT	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	49, 154, 200
BstMBI	GATC	3 cut(s)	46, 151, 197
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	267
CciI	TCATGA	2 cut(s)	205, 235
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	122, 267
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	27, 145, 206, 236
CviJI	RGCY	5 cut(s)	20, 31, 69, 81, 215
CviKI_1	RGCY	5 cut(s)	20, 31, 69, 81, 215
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	48, 153, 199
DpnII	GATC	3 cut(s)	46, 151, 197
Eco47I	GGWCC	2 cut(s)	122, 267
Eco72I	CACGTG	1 cut(s)	52
FaeI	CATG	4 cut(s)	30, 148, 209, 239
FaiI	YATR	6 cut(s)	28, 140, 146, 207, 225, 237
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	26, 144, 205, 235
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	4 cut(s)	30, 148, 209, 239
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	6, 267
Hpy188III	TCNNGA	3 cut(s)	155, 206, 236
Hpy8I	GTNNAC	2 cut(s)	6, 267
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	2 cut(s)	51, 132
HpyCH4V	TGCA	2 cut(s)	17, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	2 cut(s)	51, 132
Hsp92II	CATG	4 cut(s)	30, 148, 209, 239
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	46, 151, 197
LpnPI	CCDG	2 cut(s)	214, 283
Lsp1109I	GCAGC	1 cut(s)	29
MaeII	ACGT	2 cut(s)	51, 132
MalI	GATC	3 cut(s)	48, 153, 199
MboI	GATC	3 cut(s)	46, 151, 197
MboII	GAAGA	3 cut(s)	68, 157, 221
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	19, 34, 71, 92, 95, 243, 272, 275
MseI	TTAA	2 cut(s)	92, 180
MslI	CAYNNNNRTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	46, 151, 197
NlaIII	CATG	4 cut(s)	30, 148, 209, 239
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	2 cut(s)	205, 235
PkrI	GCNGC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
PspCI	CACGTG	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	122, 267
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	92, 180
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	46, 151, 197
Sau96I	GGNCC	2 cut(s)	122, 267
SetI	ASST	7 cut(s)	11, 22, 54, 71, 135, 260, 272
SinI	GGWCC	2 cut(s)	122, 267
SmiMI	CAYNNNNRTG	1 cut(s)	143
SsiI	CCGC	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	2 cut(s)	54, 135
TaqI	TCGA	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	92, 180
Tru9I	TTAA	2 cut(s)	92, 180
TseI	GCWGC	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	122, 267
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.