FvH4_7g05260

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0019726
Physical Location & Seq
Reverse (-)
5581876 .. 5582598
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05260.t1

Sequence Viewer

Length: 438 bp
ATGAGCATTCTAAGTGGATTTGGTTATGTTCTTGCGCTACTAGTTCTACTTCTCTGCCTTGCTTCCTACCTCTGCTCTAAACGCGCACGATTATCCATAGCCGCCGGTGACCAGACCAGCACTGGTAGTGAACAAGCTGCAGGTGGAGCTGGACTTGATGAAGCCACTATAACTAGTTACCCAAAACTTGCTTATTCCAAAGTAAAGCTCCAACATGGAAACTCAACTGCTTGTTGCTGCTCCATTTGTTTGGCTGACTACAAGGAAACCGATATGCTTTTAGTGTTGCCACATTGCGGTCATCCCTTCCATGTCAAGTGTGTTCATCCATGGCTTCGGCTTCACGCTACGTGCCCAATATGCAGGAACTCGCCTTCTCCACCTTCTCTCTGTATCCCATTTAGTCAAATAACCCCCTTGGCTACGCTGCCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

146

Amino Acids

15.46

Weight (kDa)

8.02

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 77 - 122 2.4e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 79 - 122 5.9e-11 Ring finger domain
zf-RING_11 PF17123 80 - 108 5.3e-09 RING-like zinc finger
zf-C3HC4 PF00097 80 - 121 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 80 - 121 1.9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05260
rosa_chinensis RchiOBHm_Chr1g0332051
rosa_laevigata RLG00000029696
rosa_roxburghii Rroxscaffold_4G00318420
rosa_samantha Rh1AG121900 Rh1BG093300 Rh1DG127600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 102, 297
AfiI CCNNNNNNNGG 1 cut(s) 296
AhlI ACTAGT 2 cut(s) 40, 173
AluBI AGCT 3 cut(s) 137, 149, 208
AluI AGCT 3 cut(s) 137, 149, 208
ApeKI GCWGC 3 cut(s) 137, 237, 427
AspLEI GCGC 2 cut(s) 37, 86
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 356
BbvI GCAGC 3 cut(s) 124, 224, 414
BciVI GTATCC 1 cut(s) 404
BcuI ACTAGT 2 cut(s) 40, 173
BfaI CTAG 2 cut(s) 41, 174
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 4 cut(s) 102, 138, 238, 428
BlsI GCNGC 4 cut(s) 103, 139, 239, 429
BsaAI YACGTR 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 329, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 329, 417
BseGI GGATG 2 cut(s) 301, 325
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 3 cut(s) 124, 224, 414
Bsh1236I CGCG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 105, 431
BslI CCNNNNNNNGG 1 cut(s) 296
BsmI GAATGC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 2 cut(s) 102, 297
BspFNI CGCG 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 329, 417
BssT1I CCWWGG 2 cut(s) 329, 417
BstBAI YACGTR 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 329
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 301, 325
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 2 cut(s) 37, 86
BstMWI GCNNNNNNNGC 3 cut(s) 81, 146, 360
BstPI GGTNACC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 124, 224, 414
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuI GTATCC 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 2 cut(s) 301, 325
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 37, 86
Cfr10I RCCGGY 1 cut(s) 104
CviAII CATG 3 cut(s) 215, 311, 330
CviJI RGCY 9 cut(s) 101, 137, 149, 164, 208, 254, 334, 340, 422
CviKI_1 RGCY 9 cut(s) 101, 137, 149, 164, 208, 254, 334, 340, 422
DdeI CTNAG 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 329, 417
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 329, 417
ErhI CCWWGG 2 cut(s) 329, 417
FaeI CATG 3 cut(s) 218, 314, 333
FaiI YATR 8 cut(s) 27, 98, 170, 216, 275, 312, 331, 361
FatI CATG 3 cut(s) 214, 310, 329
Fnu4HI GCNGC 4 cut(s) 102, 138, 238, 428
FokI GGATG 2 cut(s) 288, 312
Fsp4HI GCNGC 4 cut(s) 102, 138, 238, 428
FspBI CTAG 2 cut(s) 41, 174
GlaI GCGC 2 cut(s) 36, 85
GluI GCNGC 4 cut(s) 102, 138, 238, 428
HapII CCGG 2 cut(s) 105, 431
HhaI GCGC 2 cut(s) 37, 86
Hin1II CATG 3 cut(s) 218, 314, 333
Hin6I GCGC 2 cut(s) 35, 84
HinP1I GCGC 2 cut(s) 35, 84
HpaII CCGG 2 cut(s) 105, 431
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 316, 384, 393
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 140, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 146, 360
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 3 cut(s) 218, 314, 333
HspAI GCGC 2 cut(s) 35, 84
LmnI GCTCC 3 cut(s) 146, 213, 245
LpnPI CCDG 7 cut(s) 108, 118, 125, 126, 130, 135, 349
Lsp1109I GCAGC 3 cut(s) 124, 224, 414
MaeI CTAG 2 cut(s) 41, 174
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 107, 176
MhlI GDGCHC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 1 cut(s) 80
MspI CCGG 2 cut(s) 105, 431
Mva1269I GAATGC 1 cut(s) 6
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 81, 146, 360
NcoI CCATGG 1 cut(s) 329
NlaIII CATG 3 cut(s) 218, 314, 333
NmuCI GTSAC 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 131
PctI GAATGC 1 cut(s) 6
PkrI GCNGC 4 cut(s) 103, 139, 239, 429
Ppu21I YACGTR 1 cut(s) 351
PspEI GGTNACC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 142
SatI GCNGC 4 cut(s) 102, 138, 238, 428
SduI GDGCHC 1 cut(s) 356
SetI ASST 7 cut(s) 72, 139, 145, 151, 210, 353, 385
SfcI CTRYAG 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 104
SpeI ACTAGT 2 cut(s) 40, 173
SsiI CCGC 2 cut(s) 102, 297
SspMI CTAG 2 cut(s) 41, 174
StyI CCWWGG 2 cut(s) 329, 417
TaiI ACGT 1 cut(s) 353
TauI GCSGC 1 cut(s) 104
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 3 cut(s) 137, 237, 427
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 174, 314
TspRI CASTG 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 2 cut(s) 41, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.