Rroxscaffold_4G00318420

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019726
Physical Location & Seq
Reverse (-)
44536286 .. 44537443
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318420.1

Sequence Viewer

Length: 447 bp
ATGACACTAGTCACAGAGCACATTGGTTACGACCCTCTCTACAACGAAGTGAAAGCTGATCTCTGGGAGTCTCCCTACACATTTGATCATACCTCCTCATCTATAGCCGGGGACCAAACCAGCACTAGTGAACAAGCAGGAGGAGCTGGACTTGATGAAGCCACTATAACTAGTTACCCAAAGCTTGCTTATTCCAAAGTAAAGCTCCAATATGGAAACTCAACAGCTTGTTGCTGCTCTATTTGTTTGGCTGATTACAAGGAAACCGATATGCTCTTGGTGTTGCCTCATTGCGGTCATCTCTTCCATGTCAAGTGTGTGTATCCATGGCTTCGGCTTCACGCTACGTGCCCAATATGCAGGAACTCGCCTTCTCCCCCTTCTCTTTGTATTTCTTGTAGTCAAATAACCCCCTTGCCTAACGCACCAGGAGTAATTAGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

148

Amino Acids

16.07

Weight (kDa)

5.55

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 76 - 121 1.4e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 78 - 121 8.7e-12 Ring finger domain
zf-RING_11 PF17123 79 - 107 1.1e-09 RING-like zinc finger
zf-C3HC4 PF00097 79 - 120 2.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 79 - 120 1.5e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05260
rosa_chinensis RchiOBHm_Chr1g0332051
rosa_laevigata RLG00000029696
rosa_roxburghii Rroxscaffold_4G00318420
rosa_samantha Rh1AG121900 Rh1BG093300 Rh1DG127600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 293
AhlI ACTAGT 3 cut(s) 7, 125, 170
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 5 cut(s) 56, 146, 184, 205, 227
AluI AGCT 5 cut(s) 56, 146, 184, 205, 227
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 333
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 3 cut(s) 7, 125, 170
BfaI CTAG 3 cut(s) 8, 126, 171
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 109, 429
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 109, 429
BoxI GACNNNNGTC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 108, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 108, 326
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 85, 156
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 21, 353
Bsp143I GATC 2 cut(s) 58, 85
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 108, 326
BssMI GATC 2 cut(s) 58, 85
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 326
BstKTI GATC 2 cut(s) 61, 88
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 58, 85
BstMWI GCNNNNNNNGC 2 cut(s) 143, 357
BstNI CCWGG 1 cut(s) 429
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 107, 427
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 221
BsuI GTATCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 2 cut(s) 308, 327
DpnI GATC 2 cut(s) 60, 87
DpnII GATC 2 cut(s) 58, 85
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 311, 330
FaiI YATR 9 cut(s) 90, 104, 167, 213, 272, 309, 328, 358, 445
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 307, 326
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 3 cut(s) 8, 126, 171
GluI GCNGC 1 cut(s) 235
HapII CCGG 1 cut(s) 108
Hin1II CATG 2 cut(s) 311, 330
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 381, 390
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 357
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 2 cut(s) 311, 330
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 58, 85
LmnI GCTCC 2 cut(s) 143, 210
LpnPI CCDG 8 cut(s) 49, 121, 123, 132, 133, 346, 414, 441
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 3 cut(s) 8, 126, 171
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 10, 26, 173
MalI GATC 2 cut(s) 60, 87
MboI GATC 2 cut(s) 58, 85
MboII GAAGA 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 21, 353
MluCI AATT 1 cut(s) 435
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 5 cut(s) 45, 103, 106, 134, 297
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 109, 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 143, 357
NciI CCSGG 1 cut(s) 109
NcoI CCATGG 1 cut(s) 326
NdeII GATC 2 cut(s) 58, 85
NlaIII CATG 2 cut(s) 311, 330
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 348
PshAI GACNNNNGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 58, 85
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 109, 429
SduI GDGCHC 2 cut(s) 21, 353
SetI ASST 7 cut(s) 58, 95, 148, 186, 207, 229, 350
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 112
SpeI ACTAGT 3 cut(s) 7, 125, 170
Sse9I AATT 1 cut(s) 435
SsiI CCGC 1 cut(s) 294
SspMI CTAG 3 cut(s) 8, 126, 171
StyD4I CCNGG 2 cut(s) 107, 427
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 350
TasI AATT 1 cut(s) 435
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 3 cut(s) 8, 126, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.