FvH4_7g07551

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0024200
Physical Location & Seq
Reverse (-)
7446747 .. 7447479
733 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07551.t1

Sequence Viewer

Length: 267 bp
ATGGCAGTGGGAATGAATAATAATAAGGTGGTATCCGAAACTGATTTTTCAGTGTTGGCAACTGCTGTACACCAAGAAAAAGAAGACATGTCCGTGCTCAGTTCCATTCTTGAAGATATTAAAGCTCTCATGCACAACTATGAGGAGTTCAAAGTACTCTTTTCTCCTCGAGAAGCAAATAAAATAGCACACAGCATTAGCACAACAAGAGGTGTTCATTCTGTATTAGGCGGTGCGGACGTCAGGATATATGCTTTAGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

89

Amino Acids

9.65

Weight (kDa)

5.42

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 67 2.6e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024200)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07551
rosa_multiflora Rmu_sc0006936.1_g000010
rosa_roxburghii Rroxscaffold_1G00047580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AciI CCGC 2 cut(s) 231, 236
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 69, 156
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 113, 151
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 168
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 240
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 156, 158
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 67
BspACI CCGC 2 cut(s) 231, 236
BspCNI CTCAG 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 240
BstAUI TGTACA 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 90
BsuI GTATCC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 57
Csp6I GTAC 2 cut(s) 68, 155
CviAII CATG 2 cut(s) 88, 130
CviJI RGCY 1 cut(s) 125
CviKI_1 RGCY 1 cut(s) 125
CviQI GTAC 2 cut(s) 68, 155
DdeI CTNAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 168
FaeI CATG 2 cut(s) 91, 133
FaiI YATR 5 cut(s) 89, 131, 141, 250, 252
FatI CATG 2 cut(s) 87, 129
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 91, 133
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 110, 170, 244
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 91, 133
LpnPI CCDG 1 cut(s) 229
LweI GCATC 1 cut(s) 250
MaeII ACGT 1 cut(s) 240
MboII GAAGA 2 cut(s) 95, 125
MhlI GDGCHC 1 cut(s) 99
MnlI CCTC 3 cut(s) 136, 177, 203
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 92, 138
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 91, 133
NspI RCATGY 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 168
PciI ACATGT 1 cut(s) 87
PscI ACATGT 1 cut(s) 87
RsaI GTAC 2 cut(s) 69, 156
RsaNI GTAC 2 cut(s) 68, 155
RseI CAYNNNNRTG 2 cut(s) 92, 138
SaqAI TTAA 1 cut(s) 120
ScaI AGTACT 1 cut(s) 156
SduI GDGCHC 1 cut(s) 99
SetI ASST 4 cut(s) 30, 127, 214, 243
SfaNI GCATC 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 168
SgeI CNNG 9 cut(s) 86, 100, 106, 122, 142, 180, 182, 219, 256
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 92, 138
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SsiI CCGC 2 cut(s) 231, 236
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 169
TatI WGTACW 2 cut(s) 67, 154
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 12, 57
TspDTI ATGAA 2 cut(s) 29, 206
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 12, 57
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 168
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.