Rroxscaffold_1G00047580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0024200
Physical Location & Seq
Forward (+)
67200478 .. 67221652
21175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047580.1

Sequence Viewer

Length: 522 bp
ATGGCGGACGTCACATTAGATACCACCCGGGCACCCGGGGCCGGGGCAAAGCTAGCTGATACCATCTTCTACCCCATCGGGTATCGACGACAAGCTCCCTTCACCCCCATTGGGTACGGGAGGCTAACATCTTCTACCCCATCGGGTATCGACGACAAACTCCCTTCACCCCATTGGGTACGGGAGGCTAACATCTTCTACCCCATTGGCAACCCAGCCAAGCTAAAGTCACACTTTAGCAAGTTCTCCTCACTTCCTAGTGGTTCTCGCTCTGCTCGATCTACAACATCGAGTATCGATTGTGATTTTGAAGAAGCTCGGCAAAAGTCCTCACCACGAGGCACAAAGAATCCCACAACGAGGTTGGTGCTCTCCCTCGTCCACAATCACTTGAAAGAAGTCAGGTCAAGGGACACCCCGACGACCATACCCGAACTTTGGTACGCCCGCGCAGAAAAGAGATTGTTGACCAGCTGCAACAAAATTGGAGCCAAACATTTTGGCACACCGGTGGGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.0

Weight (kDa)

10.0

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024200)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07551
rosa_multiflora Rmu_sc0006936.1_g000010
rosa_roxburghii Rroxscaffold_1G00047580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 450
AciI CCGC 2 cut(s) 5, 448
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 3 cut(s) 116, 180, 443
AfiI CCNNNNNNNGG 5 cut(s) 41, 42, 111, 360, 438
AgeI ACCGGT 1 cut(s) 508
AgsI TTSAA 2 cut(s) 311, 394
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 6 cut(s) 52, 56, 95, 223, 317, 474
AluI AGCT 6 cut(s) 52, 56, 95, 223, 317, 474
Alw21I GWGCWC 1 cut(s) 372
Ama87I CYCGRG 2 cut(s) 27, 35
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 508
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 39, 515
AsuC2I CCSGG 5 cut(s) 28, 29, 36, 37, 43
AsuHPI GGTGA 3 cut(s) 94, 159, 324
AsuNHI GCTAGC 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 27, 35
AvaII GGWCC 1 cut(s) 515
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 461
BccI CCATC 3 cut(s) 71, 83, 148
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BcnI CCSGG 5 cut(s) 28, 29, 36, 37, 43
BfaI CTAG 2 cut(s) 53, 258
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
Bme1390I CCNGG 5 cut(s) 28, 29, 36, 37, 43
Bme18I GGWCC 1 cut(s) 515
BmeT110I CYCGRG 2 cut(s) 27, 35
BmgT120I GGNCC 2 cut(s) 39, 515
BmiI GGNNCC 4 cut(s) 33, 40, 490, 516
BmrFI CCNGG 5 cut(s) 28, 29, 36, 37, 43
BmtI GCTAGC 1 cut(s) 56
BpuMI CCSGG 5 cut(s) 28, 29, 36, 37, 43
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 27, 35, 36, 42
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 42, 111, 360, 438
Bse118I RCCGGY 1 cut(s) 508
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 4 cut(s) 27, 35, 36, 42
BseLI CCNNNNNNNGG 5 cut(s) 41, 42, 111, 360, 438
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 461
BseYI CCCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 508
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 2 cut(s) 27, 35
BsiSI CCGG 4 cut(s) 28, 36, 42, 509
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 5 cut(s) 41, 42, 111, 360, 438
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 27, 35
Bsp1286I GDGCHC 2 cut(s) 34, 372
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 2 cut(s) 5, 448
BspANI GGCC 1 cut(s) 41
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 4 cut(s) 33, 40, 490, 516
BspOI GCTAGC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 4 cut(s) 27, 35, 36, 42
BssMI GATC 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 54, 448
BstDEI CTNAG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 1 cut(s) 281
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 38, 53
BstSCI CCNGG 5 cut(s) 26, 27, 34, 35, 41
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 461
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 54, 448
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 39, 515
Cfr9I CCCGGG 2 cut(s) 27, 35
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 3 cut(s) 115, 179, 442
CspAI ACCGGT 1 cut(s) 508
CviQI GTAC 3 cut(s) 115, 179, 442
DdeI CTNAG 1 cut(s) 519
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 515
Eco88I CYCGRG 2 cut(s) 27, 35
EcoO109I RGGNCCY 1 cut(s) 515
FaiI YATR 1 cut(s) 428
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 425
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 475
Fsp4HI GCNGC 1 cut(s) 475
FspBI CTAG 2 cut(s) 53, 258
GlaI GCGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 475
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 41
HapII CCGG 4 cut(s) 28, 36, 42, 509
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 1 cut(s) 349
HpaII CCGG 4 cut(s) 28, 36, 42, 509
HphI GGTGA 3 cut(s) 94, 159, 324
Hpy166II GTNNAC 2 cut(s) 382, 468
Hpy8I GTNNAC 2 cut(s) 382, 468
Hpy99I CGWCG 3 cut(s) 90, 155, 424
HpyAV CCTTC 2 cut(s) 109, 174
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 53
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 100, 488
LpnPI CCDG 6 cut(s) 41, 49, 55, 228, 388, 484
Lsp1109I GCAGC 1 cut(s) 461
MaeI CTAG 2 cut(s) 53, 258
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 10, 228
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 4 cut(s) 58, 123, 187, 323
MhlI GDGCHC 2 cut(s) 34, 372
MluCI AATT 1 cut(s) 483
MnlI CCTC 7 cut(s) 114, 178, 259, 332, 340, 354, 386
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 4 cut(s) 28, 36, 42, 509
MspR9I CCNGG 5 cut(s) 28, 29, 36, 37, 43
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 38, 53
NciI CCSGG 5 cut(s) 28, 29, 36, 37, 43
NdeII GATC 1 cut(s) 278
NheI GCTAGC 1 cut(s) 52
NlaIV GGNNCC 4 cut(s) 33, 40, 490, 516
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 10, 228
OliI CACNNNNGTG 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 4 cut(s) 33, 40, 490, 516
PspPI GGNCC 2 cut(s) 39, 515
PspPPI RGGWCCY 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 474
RsaI GTAC 3 cut(s) 116, 180, 443
RsaNI GTAC 3 cut(s) 115, 179, 442
RseI CAYNNNNRTG 1 cut(s) 509
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 2 cut(s) 39, 515
ScrFI CCNGG 5 cut(s) 28, 29, 36, 37, 43
SduI GDGCHC 2 cut(s) 34, 372
SgrAI CRCCGGYG 1 cut(s) 508
SinI GGWCC 1 cut(s) 515
SmaI CCCGGG 2 cut(s) 29, 37
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 1 cut(s) 483
SsiI CCGC 2 cut(s) 5, 448
SspMI CTAG 2 cut(s) 53, 258
StyD4I CCNGG 5 cut(s) 26, 27, 34, 35, 41
TaiI ACGT 1 cut(s) 12
TaqI TCGA 5 cut(s) 85, 150, 277, 290, 297
TasI AATT 1 cut(s) 483
TfiI GAWTC 1 cut(s) 349
TseFI GTSAC 2 cut(s) 10, 228
TseI GCWGC 1 cut(s) 474
Tsp45I GTSAC 2 cut(s) 10, 228
TspMI CCCGGG 2 cut(s) 27, 35
VpaK11BI GGWCC 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmaI CCCGGG 2 cut(s) 27, 35
XspI CTAG 2 cut(s) 53, 258
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.