Rmu_sc0006936.1_g000010

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006936.1
OG0024200
Physical Location & Seq
Reverse (-)
41091 .. 44059
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006936.1_g000010.1.cds

Sequence Viewer

Length: 525 bp
atgcgccttgatatagtcattttcgaaacagatttctctagattggcaacagctgtgaaccaagaagaacataatttttctatgctcagttttgtgttagaagatttgaaggatcatattagtagacatgctgattttaaagttgtgtatgcttcccgtgaagccaataaagttgctcttactctaccaactaaagctcttttcctagaatcctcaagagccgactgtcagtgctaccaaaccctctgtcaatgtgcttcggtcctagtctcctcaagagccgactatagtactgcgaccacaacggttacagaaccagccaagcaagggcaacgccttagcaaaccagccaagctaaagtcacgctttagcaagttttcctcatttcccagtgattgtcgctctgctcgatctacgacgtcgagtatcgattgtgattttgaagaagctcagcaaaagtcctcgccacgaggcacaaagaatcccacgatgaggttggtgctctcctcgtccacaatcgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

174

Amino Acids

19.35

Weight (kDa)

8.77

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024200)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07551
rosa_multiflora Rmu_sc0006936.1_g000010
rosa_roxburghii Rroxscaffold_1G00047580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 422
AccI GTMKAC 1 cut(s) 124
AclWI GGATC 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 327, 492
AgsI TTSAA 2 cut(s) 109, 443
AluBI AGCT 4 cut(s) 53, 197, 355, 449
AluI AGCT 4 cut(s) 53, 197, 355, 449
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 120
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 262
BauI CACGAG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 3 cut(s) 39, 206, 266
BfmI CTRYAG 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 450
BmcAI AGTACT 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 199, 259
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 492
Bse1I ACTGG 1 cut(s) 390
BseCI ATCGAT 1 cut(s) 429
BseLI CCNNNNNNNGG 2 cut(s) 327, 492
BseMII CTCAG 2 cut(s) 100, 464
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 262, 496
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 504
BslI CCNNNNNNNGG 2 cut(s) 327, 492
BsmAI GTCTC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 112, 410
Bsp1720I GCTNAGC 1 cut(s) 450
BspCNI CTCAG 2 cut(s) 99, 463
BspDI ATCGAT 1 cut(s) 429
BspPI GGATC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 390
BssMI GATC 2 cut(s) 112, 410
BssNI GRCGYC 1 cut(s) 419
BssSI CACGAG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 468
Bst4CI ACNGT 2 cut(s) 227, 307
BstACI GRCGYC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 86, 338, 450
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 115, 413
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 112, 410
BstNSI RCATGY 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 236, 397
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 262
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 291
CviAII CATG 1 cut(s) 128
CviJI RGCY 9 cut(s) 53, 164, 197, 221, 281, 320, 350, 355, 449
CviKI_1 RGCY 9 cut(s) 53, 164, 197, 221, 281, 320, 350, 355, 449
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 3 cut(s) 86, 338, 450
DpnI GATC 2 cut(s) 114, 412
DpnII GATC 2 cut(s) 112, 410
DraI TTTAAA 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 262
FaeI CATG 1 cut(s) 131
FaiI YATR 7 cut(s) 14, 72, 83, 117, 129, 150, 288
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 350, 382
FatI CATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 124
FspBI CTAG 3 cut(s) 39, 206, 266
GlaI GCGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 209, 481
Hpy166II GTNNAC 3 cut(s) 58, 125, 513
Hpy188III TCNNGA 3 cut(s) 39, 216, 276
Hpy8I GTNNAC 3 cut(s) 58, 125, 513
Hpy99I CGWCG 2 cut(s) 421, 424
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 227, 307
HpyCH4IV ACGT 1 cut(s) 419
HpyF3I CTNAG 3 cut(s) 86, 338, 450
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 112, 410
LpnPI CCDG 3 cut(s) 330, 360, 403
MaeI CTAG 3 cut(s) 39, 206, 266
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 307, 360
MalI GATC 2 cut(s) 114, 412
MboI GATC 2 cut(s) 112, 410
MboII GAAGA 3 cut(s) 77, 113, 455
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 1 cut(s) 73
MnlI CCTC 8 cut(s) 223, 254, 283, 391, 464, 472, 486, 517
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 53
NdeII GATC 2 cut(s) 112, 410
NlaIII CATG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 360
NspI RCATGY 1 cut(s) 131
NspV TTCGAA 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 2 cut(s) 209, 481
PspPI GGNCC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 112, 410
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 292
SduI GDGCHC 1 cut(s) 504
SetI ASST 6 cut(s) 55, 199, 357, 422, 451, 497
SfcI CTRYAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 2 cut(s) 214, 274
SmoI CTYRAG 2 cut(s) 214, 274
Sse9I AATT 1 cut(s) 73
SspMI CTAG 3 cut(s) 39, 206, 266
TaaI ACNGT 2 cut(s) 227, 307
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 24, 409, 422, 429
TaqII GACCGA 1 cut(s) 250
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 2 cut(s) 209, 481
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 236, 397
TseFI GTSAC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 360
TspRI CASTG 2 cut(s) 236, 397
VpaK11BI GGWCC 1 cut(s) 262
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 124
XspI CTAG 3 cut(s) 39, 206, 266
ZraI GACGTC 1 cut(s) 420
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.