FvH4_7g13990

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
12456649 .. 12459076
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13990.t1

Sequence Viewer

Length: 237 bp
ATGTCGAAGAAGAACGATCTTGGTCGCCGGAAAAGGCAGCACGAATTCGAACTCAGAAGAGAGAAAGAAGAGAAAGAAAAGAGGGCAAAAAAGCTTCAAGCAAAGAAGAACAAGATGAAAGTGGATGGTACTGAGAAGAAGAAGGGTGGGTTTCACGTGGGCAAGAAGAAGTTGAAGACTAAAATGACCGCATTGGCAAAGGCTAAAGCTGCCCAAGCAATGGAGGTTGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

10.44

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13990 FvH4_7g13990
malus_domestica MD01G1056300.v1.1
pyrus_communis pycom01g08180
rosa_chinensis RchiOBHm_Chr1g0354641
rosa_multiflora Rmu_sc0006632.1_g000006
rosa_roxburghii Rroxscaffold_4G00300880
rosa_rugosa Rorug01G0243600
rosa_samantha Rh1AG254800 Rh1BG225400 Rh1CG237900 Rh1DG253400
rosa_wichuraiana Rw1G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 44
AcvI CACGTG 1 cut(s) 157
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 2 cut(s) 98, 175
AluBI AGCT 2 cut(s) 94, 209
AluI AGCT 2 cut(s) 94, 209
ApeKI GCWGC 2 cut(s) 37, 209
ApoI RAATTY 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 49, 196
BccI CCATC 1 cut(s) 119
BisI GCNGC 2 cut(s) 38, 210
BlsI GCNGC 2 cut(s) 39, 211
BpiI GAAGAC 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 225
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 67, 123
BseXI GCAGC 2 cut(s) 49, 196
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 66, 124
BspT104I TTCGAA 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 52, 63
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 53, 132
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 209, 215
BstV1I GCAGC 2 cut(s) 49, 196
BstV2I GAAGAC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 130
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 3 cut(s) 94, 203, 209
CviKI_1 RGCY 3 cut(s) 94, 203, 209
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 53, 132
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 52, 63
EarI CTCTTC 2 cut(s) 52, 63
Eco72I CACGTG 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 38, 210
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 38, 210
GluI GCNGC 2 cut(s) 38, 210
HapII CCGG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 92
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 215
HpyF3I CTNAG 2 cut(s) 53, 132
HpySE526I ACGT 1 cut(s) 156
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 49, 196
MaeII ACGT 1 cut(s) 156
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 9 cut(s) 19, 22, 69, 80, 118, 148, 151, 178, 187
MluCI AATT 1 cut(s) 44
MnlI CCTC 2 cut(s) 75, 217
MspI CCGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 209, 215
NdeII GATC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 39, 211
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 157
PspCI CACGTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SatI GCNGC 2 cut(s) 38, 210
Sau3AI GATC 1 cut(s) 16
SetI ASST 4 cut(s) 96, 159, 211, 228
SfuI TTCGAA 1 cut(s) 48
SgeI CNNG 9 cut(s) 32, 40, 53, 110, 124, 167, 169, 175, 227
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 189
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 5, 48
TasI AATT 1 cut(s) 44
TseI GCWGC 2 cut(s) 37, 209
TspDTI ATGAA 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 220
XapI RAATTY 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.