MD01G1056300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017360
Physical Location & Seq
Reverse (-)
16161532 .. 16163308
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1056300.v1.1.491

Sequence Viewer

Length: 243 bp
ATGTCGAAGAAGAACGATCTAGCTCGTAGAAAAAGGCAGCATGAATTCGAACTCAAAAGAGAGAAAGAAGAAAGAGAAAAGAAGGCAAAGAAGCTTCAGGCAAAGAAGAGCAAGATGAAAGTTGATGGTAATGAGAAGAAAAAGAAGGGTGGAGGTTTTAAAGTAGGCAAGAAAAAGTTCAAGACCAAAATGACGGCGCTGAATAAGGCTAAAGCCGCCCAAGCAATGGAGGTTGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.32

Weight (kDa)

10.42

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13990 FvH4_7g13990
malus_domestica MD01G1056300.v1.1
pyrus_communis pycom01g08180
rosa_chinensis RchiOBHm_Chr1g0354641
rosa_multiflora Rmu_sc0006632.1_g000006
rosa_roxburghii Rroxscaffold_4G00300880
rosa_rugosa Rorug01G0243600
rosa_samantha Rh1AG254800 Rh1BG225400 Rh1CG237900 Rh1DG253400
rosa_wichuraiana Rw1G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 2 cut(s) 23, 94
AluI AGCT 2 cut(s) 23, 94
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 48
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 210
BfaI CTAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 2 cut(s) 38, 216
BlsI GCNGC 2 cut(s) 39, 217
Bpu14I TTCGAA 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 231
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 215, 221
BstV1I GCAGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 199
CviAII CATG 1 cut(s) 41
CviJI RGCY 4 cut(s) 23, 94, 209, 215
CviKI_1 RGCY 4 cut(s) 23, 94, 209, 215
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 44
FaeI CATG 1 cut(s) 44
FaiI YATR 1 cut(s) 42
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 38, 216
Fsp4HI GCNGC 2 cut(s) 38, 216
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 38, 216
HaeII RGCGCY 1 cut(s) 200
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 76, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 221
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 5 cut(s) 19, 22, 80, 118, 148
MluCI AATT 1 cut(s) 44
MnlI CCTC 2 cut(s) 146, 223
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 215, 221
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 44
NspV TTCGAA 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 39, 217
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 38, 216
Sau3AI GATC 1 cut(s) 16
SetI ASST 4 cut(s) 25, 96, 157, 234
SfuI TTCGAA 1 cut(s) 48
SgeI CNNG 8 cut(s) 32, 36, 53, 110, 124, 181, 193, 233
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 20
TaqI TCGA 2 cut(s) 5, 48
TasI AATT 1 cut(s) 44
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 57, 131
Van91I CCANNNNNTGG 1 cut(s) 226
XapI RAATTY 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.