Rorug01G0243600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017360
Physical Location & Seq
Forward (+)
34939622 .. 34944566
4945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0243600.1

Sequence Viewer

Length: 1050 bp
ATGGCAGAAGAAGCGCACTTGCAAGTGATTGATCGGGTTGTGCAAGAAGCGCTCGACAAAGCTAATTTAACCGAGAGAGATTTGTCTGCAGTTGCTGTTACCATTGGTCCTGGTTTAAGCCTTTGTCTTCGTGTTGGTGTGCGGAAAGCTCGTAAAATTGCTGGTACTTTTAGCTTACCAATTATTGGTGTACATCACATGGAGGCTCATGCTCTTGTAGCCAGGTTAACTGAACAAGAACTACAATTTCCTTTCATGGCTCTGCTTATTTCAGGAGGACACAATGTACTCATCCTTGCTCGTGATCTTGGTCATTATGTACAACTTGGGACCACAATAGATGATGCTATTGGTGAGGCATATGATAAGATAGCAAAATGGCTTGGTCTTGACTTGAGGAGAAGTGGTGGGCCAGCTATTGAAGAGCTTGCCCAAGAGGGTGATGCAAAATCAATCAAATTCTCGACTCCAATGAAACAACATAAAGATTGCAACTTCTCGTACGCTGGTCTGAAGACTCAAGTGAGGCTGGCAATTGAATCTAAAAATATTAATGCTACAATTCCTGTTTCTTCAGCAACTAGCGAAGATAGAAGGTCCCGAGCTGATATTGCTGCCTCTTTTCAGAGAGTTGCAGTATTACATCTGGAAGAAAGGTGTGAACGAGCAATTGAATGGGCTTTGAAGATTGAACCTTCTGTAAAACATATGGTTGTGTCTGGTGGTGTTGCATCAAATCAATATGTTCGGGCTCGACTTGATCAGGTTGTCAAGAAAAACAACTTACAACTTGTATGCCCTCCTCCCAGCCTTTGTACAGACAACGGCGTAATGGTGGCATGGACTGGCATTGAGAACTTTTGTATGGGAAGATTTGATCCACCACCACCTGCAGATGAACCTGAAGATATTGAGTTTGATCTGCGGCCAAGGTGGCCATTGGGGGAAGAATACGCTGAGGGAAGGAGTGAAGCTCGGTCAATGAGAACGGCCCGCATTCATCCGTCTCTGACATCTCTCGTCCAAGCATCTTTGCAACAGCAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.47

Weight (kDa)

6.23

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TsaD PF00814 2 - 281 7.6e-77 tRNA N6-adenosine threonylcarbamoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13990 FvH4_7g13990
malus_domestica MD01G1056300.v1.1
pyrus_communis pycom01g08180
rosa_chinensis RchiOBHm_Chr1g0354641
rosa_multiflora Rmu_sc0006632.1_g000006
rosa_roxburghii Rroxscaffold_4G00300880
rosa_rugosa Rorug01G0243600
rosa_samantha Rh1AG254800 Rh1BG225400 Rh1CG237900 Rh1DG253400
rosa_wichuraiana Rw1G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
Acc36I ACCTGC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 185
AciI CCGC 3 cut(s) 142, 925, 994
AclWI GGATC 1 cut(s) 872
AcoI YGGCCR 2 cut(s) 926, 935
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 3 cut(s) 533, 558, 924
AfaI GTAC 6 cut(s) 166, 192, 288, 321, 503, 817
AfeI AGCGCT 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 422, 539, 674, 685, 692
AjnI CCWGG 2 cut(s) 109, 221
AluBI AGCT 7 cut(s) 62, 149, 174, 416, 427, 605, 974
AluI AGCT 7 cut(s) 62, 149, 174, 416, 427, 605, 974
Alw26I GTCTC 1 cut(s) 1011
AlwI GGATC 1 cut(s) 872
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 600
Aor51HI AGCGCT 1 cut(s) 51
AoxI GGCC 4 cut(s) 410, 926, 935, 990
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 1 cut(s) 458
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 2 cut(s) 16, 52
AspS9I GGNCC 5 cut(s) 107, 330, 410, 597, 991
AsuHPI GGTGA 2 cut(s) 365, 452
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 3 cut(s) 107, 330, 597
BalI TGGCCA 1 cut(s) 937
BanII GRGCYC 1 cut(s) 754
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 119, 521
BbvCI CCTCAGC 1 cut(s) 957
BbvI GCAGC 1 cut(s) 601
BceAI ACGGC 2 cut(s) 841, 1005
BciT130I CCWGG 2 cut(s) 111, 223
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 1 cut(s) 1011
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 3 cut(s) 87, 891, 1046
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 898
BglI GCCNNNNNGGC 1 cut(s) 934
BisI GCNGC 2 cut(s) 615, 926
BlsI GCNGC 2 cut(s) 616, 927
Bme1390I CCNGG 2 cut(s) 111, 223
Bme18I GGWCC 3 cut(s) 107, 330, 597
BmeT110I CYCGRG 1 cut(s) 600
BmgT120I GGNCC 5 cut(s) 107, 330, 410, 597, 991
BmiI GGNNCC 2 cut(s) 331, 599
BmrFI CCNGG 2 cut(s) 111, 223
BmsI GCATC 4 cut(s) 334, 433, 740, 1037
BpiI GAAGAC 2 cut(s) 119, 521
BplI GAGNNNNNCTC 2 cut(s) 958, 990
Bpu10I CCTNAGC 1 cut(s) 957
BpuEI CTTGAG 2 cut(s) 415, 504
BsaJI CCNNGG 1 cut(s) 929
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 850
BseBI CCWGG 2 cut(s) 111, 223
BseDI CCNNGG 1 cut(s) 929
BseGI GGATG 2 cut(s) 291, 1000
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 1 cut(s) 850
BseRI GAGGAG 2 cut(s) 412, 792
BseXI GCAGC 1 cut(s) 601
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 4 cut(s) 412, 928, 937, 992
BsiHKCI CYCGRG 1 cut(s) 600
BsiWI CGTACG 1 cut(s) 501
BslFI GGGAC 2 cut(s) 343, 583
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 1011
BsmBI CGTCTC 1 cut(s) 1011
BsmFI GGGAC 2 cut(s) 343, 583
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 4 cut(s) 412, 928, 937, 992
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 754
Bsp1407I TGTACA 3 cut(s) 190, 319, 815
Bsp143I GATC 5 cut(s) 31, 304, 760, 877, 919
BspACI CCGC 3 cut(s) 142, 925, 994
BspANI GGCC 4 cut(s) 412, 928, 937, 992
BspCNI CTCAG 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 331, 599
BspMAI CTGCAG 2 cut(s) 91, 895
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 1 cut(s) 872
BspQI GCTCTTC 1 cut(s) 417
BsrGI TGTACA 3 cut(s) 190, 319, 815
BsrI ACTGG 1 cut(s) 850
BssECI CCNNGG 1 cut(s) 929
BssMI GATC 5 cut(s) 31, 304, 760, 877, 919
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 929
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 111, 223
Bst6I CTCTTC 1 cut(s) 417
BstAUI TGTACA 3 cut(s) 190, 319, 815
BstC8I GCNNGC 4 cut(s) 414, 429, 531, 994
BstDEI CTNAG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 291, 1000
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 16, 52
BstKTI GATC 5 cut(s) 34, 307, 763, 880, 922
BstMAI GTCTC 1 cut(s) 1011
BstMBI GATC 5 cut(s) 31, 304, 760, 877, 919
BstMWI GCNNNNNNNGC 5 cut(s) 11, 49, 218, 611, 934
BstNI CCWGG 2 cut(s) 111, 223
BstSCI CCNGG 2 cut(s) 109, 221
BstSFI CTRYAG 3 cut(s) 87, 891, 1046
BstV1I GCAGC 1 cut(s) 601
BstV2I GAAGAC 2 cut(s) 119, 521
BsuRI GGCC 4 cut(s) 412, 928, 937, 992
BtsCI GGATG 2 cut(s) 291, 1000
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 4 cut(s) 414, 429, 531, 994
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 2 cut(s) 16, 52
Cfr13I GGNCC 5 cut(s) 107, 330, 410, 597, 991
Csp6I GTAC 6 cut(s) 165, 191, 287, 320, 502, 816
CviAII CATG 4 cut(s) 199, 209, 256, 840
CviQI GTAC 6 cut(s) 165, 191, 287, 320, 502, 816
DdeI CTNAG 1 cut(s) 957
DpnI GATC 5 cut(s) 33, 306, 762, 879, 921
DpnII GATC 5 cut(s) 31, 304, 760, 877, 919
EaeI YGGCCR 2 cut(s) 926, 935
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 929
Eco24I GRGCYC 1 cut(s) 754
Eco47I GGWCC 3 cut(s) 107, 330, 597
Eco47III AGCGCT 1 cut(s) 51
Eco57I CTGAAG 3 cut(s) 533, 558, 924
Eco88I CYCGRG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 597
EcoRII CCWGG 2 cut(s) 109, 221
EcoT14I CCWWGG 1 cut(s) 929
EcoT38I GRGCYC 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 929
Esp3I CGTCTC 1 cut(s) 1011
FaeI CATG 4 cut(s) 202, 212, 259, 843
FaqI GGGAC 2 cut(s) 343, 583
FatI CATG 4 cut(s) 198, 208, 255, 839
FauI CCCGC 1 cut(s) 1001
FauNDI CATATG 2 cut(s) 361, 708
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 615, 926
FokI GGATG 2 cut(s) 278, 987
FriOI GRGCYC 1 cut(s) 754
Fsp4HI GCNGC 2 cut(s) 615, 926
FspBI CTAG 1 cut(s) 582
GlaI GCGC 2 cut(s) 15, 51
GluI GCNGC 2 cut(s) 615, 926
GsaI CCCAGC 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 4 cut(s) 412, 928, 937, 992
HhaI GCGC 2 cut(s) 16, 52
Hin1II CATG 4 cut(s) 202, 212, 259, 843
Hin6I GCGC 2 cut(s) 14, 50
HinP1I GCGC 2 cut(s) 14, 50
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 466, 517, 539
HpaI GTTAAC 1 cut(s) 228
HphI GGTGA 2 cut(s) 365, 452
Hpy166II GTNNAC 3 cut(s) 191, 228, 662
Hpy188I TCNGA 3 cut(s) 513, 627, 1011
Hpy188III TCNNGA 7 cut(s) 273, 302, 389, 463, 600, 647, 772
Hpy8I GTNNAC 3 cut(s) 191, 228, 662
HpyAV CCTTC 3 cut(s) 588, 705, 957
HpyCH4V TGCA 9 cut(s) 22, 43, 89, 446, 492, 635, 731, 893, 1036
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 49, 218, 611, 934
HpyF3I CTNAG 1 cut(s) 957
Hsp92II CATG 4 cut(s) 202, 212, 259, 843
HspAI GCGC 2 cut(s) 14, 50
Ksp22I TGATCA 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 228
Kzo9I GATC 5 cut(s) 31, 304, 760, 877, 919
LguI GCTCTTC 1 cut(s) 417
Lsp1109I GCAGC 1 cut(s) 601
LweI GCATC 4 cut(s) 334, 433, 740, 1037
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 33, 306, 762, 879, 921
MboI GATC 5 cut(s) 31, 304, 760, 877, 919
MfeI CAATTG 2 cut(s) 534, 669
MhlI GDGCHC 1 cut(s) 754
MlsI TGGCCA 1 cut(s) 937
MluCI AATT 8 cut(s) 64, 156, 180, 245, 458, 534, 561, 669
MluNI TGGCCA 1 cut(s) 937
MlyI GAGTC 2 cut(s) 460, 511
Mox20I TGGCCA 1 cut(s) 937
MscI TGGCCA 1 cut(s) 937
MseI TTAA 4 cut(s) 68, 116, 227, 552
Msp20I TGGCCA 1 cut(s) 937
MspR9I CCNGG 2 cut(s) 111, 223
MunI CAATTG 2 cut(s) 534, 669
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 2 cut(s) 111, 223
MwoI GCNNNNNNNGC 5 cut(s) 11, 49, 218, 611, 934
NdeI CATATG 2 cut(s) 361, 708
NdeII GATC 5 cut(s) 31, 304, 760, 877, 919
NlaIII CATG 4 cut(s) 202, 212, 259, 843
NlaIV GGNNCC 2 cut(s) 331, 599
PaqCI CACCTGC 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 417
PctI GAATGC 1 cut(s) 996
PfeI GAWTC 1 cut(s) 539
Pfl23II CGTACG 1 cut(s) 501
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 2 cut(s) 616, 927
PleI GAGTC 2 cut(s) 460, 511
PpsI GAGTC 2 cut(s) 460, 511
PpuMI RGGWCCY 1 cut(s) 597
PshBI ATTAAT 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 109, 221
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 2 cut(s) 109, 221
PspLI CGTACG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 331, 599
PspPI GGNCC 5 cut(s) 107, 330, 410, 597, 991
PspPPI RGGWCCY 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
PstI CTGCAG 2 cut(s) 91, 895
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 6 cut(s) 166, 192, 288, 321, 503, 817
RsaNI GTAC 6 cut(s) 165, 191, 287, 320, 502, 816
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 4 cut(s) 68, 116, 227, 552
SatI GCNGC 2 cut(s) 615, 926
Sau3AI GATC 5 cut(s) 31, 304, 760, 877, 919
Sau96I GGNCC 5 cut(s) 107, 330, 410, 597, 991
SchI GAGTC 2 cut(s) 460, 511
ScrFI CCNGG 2 cut(s) 111, 223
SduI GDGCHC 1 cut(s) 754
SfaNI GCATC 4 cut(s) 334, 433, 740, 1037
SfcI CTRYAG 3 cut(s) 87, 891, 1046
SfiI GGCCNNNNNGGCC 1 cut(s) 934
SinI GGWCC 3 cut(s) 107, 330, 597
SmlI CTYRAG 2 cut(s) 394, 519
SmoI CTYRAG 2 cut(s) 394, 519
Sse9I AATT 8 cut(s) 64, 156, 180, 245, 458, 534, 561, 669
SsiI CCGC 3 cut(s) 142, 925, 994
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 109, 221
StyI CCWWGG 1 cut(s) 929
TaqI TCGA 3 cut(s) 54, 464, 754
TaqII GACCGA 1 cut(s) 966
TasI AATT 8 cut(s) 64, 156, 180, 245, 458, 534, 561, 669
TatI WGTACW 4 cut(s) 190, 286, 319, 815
TauI GCSGC 1 cut(s) 928
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 4 cut(s) 68, 116, 227, 552
Tru9I TTAA 4 cut(s) 68, 116, 227, 552
TseI GCWGC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 244, 488, 912, 989
TspGWI ACGGA 1 cut(s) 993
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 3 cut(s) 107, 330, 597
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 1 cut(s) 458
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.