FvH4_7g17590

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0020348
Physical Location & Seq
Forward (+)
14897010 .. 14897417
408 bp
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UTR
Exon/CDS
Intron
FvH4_7g17590.t1

Sequence Viewer

Length: 408 bp
ATGAAATCCATTGAGGTTTTCGTTCTGCTAGCAATATTGTTGATGGCTTTACCCATTCCTCTGATGGCAACACCAGATGAAGAAACCCCTGCAGCTTTTCCCATGAGGGGAAGAAGCCGCTTCCTTGCCACGCAGACTCCTCGGCCTGTGACCTCGCAATGTAGCCTGAAACCTGGGACTTGTACCGCTAAAGGCAGCCCCGGACCAAACTGCTGCAACAACAGATGTGTTGATATGGGCACAGACAAGAACAACTGCGGGTCTTGTGGGAAGAAATGCAAGATAACAGAGATATGCTGCAAAGGTCATATTGTGAACCCAATGACTGACAATTTCAACTGCGGGAGCTGCTTCAACAGTTGCAAGGTTGGCAGTTCATGTGAAAATGGGATGTGCGACTACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

136

Amino Acids

14.4

Weight (kDa)

8.36

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 52 - 135 1e-24 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020348)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17590
malus_domestica MD10G1324900.v1.1
prunus_persica Prupe.4G017300_v2.0.a1 Prupe.4G020700_v2.0.a1 Prupe.4G199900_v2.0.a1 Prupe.4G239000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 118, 186, 258, 342
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 337, 355
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 95, 348
AluI AGCT 2 cut(s) 95, 348
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 5 cut(s) 92, 195, 213, 297, 348
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 201
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 242
BbvI GCAGC 5 cut(s) 104, 200, 207, 284, 335
BccI CCATC 2 cut(s) 37, 58
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 174
BcnI CCSGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 6 cut(s) 93, 118, 196, 214, 298, 349
BlsI GCNGC 6 cut(s) 94, 119, 197, 215, 299, 350
Bme1390I CCNGG 2 cut(s) 174, 201
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 174, 201
BmtI GCTAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 140, 173, 199
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 140, 173, 199
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 5 cut(s) 104, 200, 207, 284, 335
BshFI GGCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 4 cut(s) 118, 186, 258, 342
BspANI GGCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 140, 173, 199
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 396
BstMWI GCNNNNNNNGC 2 cut(s) 348, 369
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 172, 199
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 5 cut(s) 104, 200, 207, 284, 335
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 103, 378
CviJI RGCY 7 cut(s) 47, 95, 117, 145, 165, 198, 348
CviKI_1 RGCY 7 cut(s) 47, 95, 117, 145, 165, 198, 348
CviQI GTAC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 106, 381
FaiI YATR 6 cut(s) 104, 236, 295, 309, 379, 406
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 102, 377
FauI CCCGC 2 cut(s) 251, 335
Fnu4HI GCNGC 6 cut(s) 93, 118, 196, 214, 298, 349
FokI GGATG 1 cut(s) 403
Fsp4HI GCNGC 6 cut(s) 93, 118, 196, 214, 298, 349
FspBI CTAG 1 cut(s) 29
GluI GCNGC 6 cut(s) 93, 118, 196, 214, 298, 349
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 201
Hin1II CATG 2 cut(s) 106, 381
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 5 cut(s) 92, 216, 279, 300, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 369
Hsp92II CATG 2 cut(s) 106, 381
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 7 cut(s) 87, 102, 159, 159, 179, 186, 214
Lsp1109I GCAGC 5 cut(s) 104, 200, 207, 284, 335
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 3 cut(s) 92, 123, 283
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 5 cut(s) 7, 69, 99, 150, 163
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 174, 201
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 348, 369
NciI CCSGG 1 cut(s) 201
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 106, 381
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 148
PkrI GCNGC 6 cut(s) 94, 119, 197, 215, 299, 350
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 94
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SatI GCNGC 6 cut(s) 93, 118, 196, 214, 298, 349
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 174, 201
SduI GDGCHC 1 cut(s) 242
SetI ASST 7 cut(s) 18, 97, 155, 175, 307, 350, 369
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 203
Sse9I AATT 1 cut(s) 331
SsiI CCGC 4 cut(s) 118, 186, 258, 342
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 172, 199
TaaI ACNGT 1 cut(s) 359
TasI AATT 1 cut(s) 331
TauI GCSGC 1 cut(s) 120
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 5 cut(s) 92, 195, 213, 297, 348
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 17, 93, 366
VpaK11BI GGWCC 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.