RNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39140 AT2G39140 |
| fragaria_vesca | FvH4_7g18810 FvH4_7g18810 FvH4_7g18810 FvH4_7g18810 FvH4_7g18810 FvH4_7g18810 |
| malus_domestica | MD07G1170000.v1.1 |
| prunus_persica | Prupe.2G208900_v2.0.a1 |
| pyrus_communis | pycom07g16390 |
| rosa_chinensis | RchiOBHm_Chr1g0362601 |
| rosa_laevigata | RLG00000027635 |
| rosa_multiflora | Rmu_sc0005725.1_g000010 |
| rosa_roxburghii | Rroxscaffold_4G00293910 |
| rosa_rugosa | Rorug01G0300000.1 |
| rosa_samantha | Rh1AG308600 Rh1BG272300 Rh1CG289500 Rh1DG302700 |
| rosa_wichuraiana | Rw1G027410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 107 |
| Acc36I | ACCTGC | 1 cut(s) | 107 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 283 |
| AccII | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| AclWI | GGATC | 3 cut(s) | 224, 536, 969 |
| AcoI | YGGCCR | 3 cut(s) | 193, 441, 745 |
| AcsI | RAATTY | 2 cut(s) | 116, 966 |
| AcuI | CTGAAG | 1 cut(s) | 807 |
| AcyI | GRCGYC | 1 cut(s) | 455 |
| AfaI | GTAC | 4 cut(s) | 635, 928, 1020, 1071 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 283, 768, 1155 |
| AflIII | ACRYGT | 1 cut(s) | 1066 |
| AgsI | TTSAA | 2 cut(s) | 52, 121 |
| AjnI | CCWGG | 3 cut(s) | 212, 544, 712 |
| AluBI | AGCT | 5 cut(s) | 26, 202, 241, 247, 478 |
| AluI | AGCT | 5 cut(s) | 26, 202, 241, 247, 478 |
| Alw21I | GWGCWC | 1 cut(s) | 354 |
| Alw26I | GTCTC | 2 cut(s) | 275, 428 |
| AlwI | GGATC | 3 cut(s) | 224, 536, 969 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 938 |
| Ama87I | CYCGRG | 1 cut(s) | 1103 |
| AoxI | GGCC | 4 cut(s) | 193, 285, 441, 745 |
| ApeKI | GCWGC | 8 cut(s) | 5, 17, 199, 343, 418, 475, 644, 1175 |
| ApoI | RAATTY | 2 cut(s) | 116, 966 |
| AspLEI | GCGC | 4 cut(s) | 136, 142, 268, 644 |
| AspS9I | GGNCC | 2 cut(s) | 286, 433 |
| AsuHPI | GGTGA | 5 cut(s) | 88, 118, 346, 508, 1148 |
| AvaI | CYCGRG | 1 cut(s) | 1103 |
| AvaII | GGWCC | 1 cut(s) | 433 |
| BauI | CACGAG | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 1 cut(s) | 354 |
| BbvI | GCAGC | 7 cut(s) | 29, 211, 355, 430, 487, 631, 1162 |
| BccI | CCATC | 6 cut(s) | 227, 277, 482, 785, 899, 908 |
| BceAI | ACGGC | 2 cut(s) | 732, 836 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 418, 452, 574, 608 |
| BciT130I | CCWGG | 3 cut(s) | 214, 546, 714 |
| BcoDI | GTCTC | 2 cut(s) | 275, 428 |
| BfaI | CTAG | 1 cut(s) | 23 |
| BfuAI | ACCTGC | 1 cut(s) | 107 |
| Bme1390I | CCNGG | 3 cut(s) | 214, 546, 714 |
| Bme18I | GGWCC | 1 cut(s) | 433 |
| BmeT110I | CYCGRG | 1 cut(s) | 1103 |
| BmgT120I | GGNCC | 2 cut(s) | 286, 433 |
| BmiI | GGNNCC | 1 cut(s) | 1010 |
| BmrFI | CCNGG | 3 cut(s) | 214, 546, 714 |
| BmrI | ACTGGG | 1 cut(s) | 777 |
| BmuI | ACTGGG | 1 cut(s) | 777 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1040, 1072 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 2 cut(s) | 227, 1067 |
| BsaBI | GATNNNNATC | 1 cut(s) | 890 |
| BsaHI | GRCGYC | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 8 cut(s) | 212, 223, 375, 545, 600, 712, 1102, 1149 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 149, 179 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 283, 768, 1155 |
| Bse1I | ACTGG | 2 cut(s) | 250, 772 |
| Bse3DI | GCAATG | 1 cut(s) | 846 |
| Bse8I | GATNNNNATC | 1 cut(s) | 890 |
| BseBI | CCWGG | 3 cut(s) | 214, 546, 714 |
| BseDI | CCNNGG | 8 cut(s) | 212, 223, 375, 545, 600, 712, 1102, 1149 |
| BseGI | GGATG | 2 cut(s) | 207, 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 890 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 283, 768, 1155 |
| BseMI | GCAATG | 1 cut(s) | 846 |
| BseMII | CTCAG | 2 cut(s) | 439, 542 |
| BseNI | ACTGG | 2 cut(s) | 250, 772 |
| BseRI | GAGGAG | 9 cut(s) | 94, 97, 169, 172, 175, 178, 263, 400, 516 |
| BseX3I | CGGCCG | 1 cut(s) | 441 |
| BseXI | GCAGC | 7 cut(s) | 29, 211, 355, 430, 487, 631, 1162 |
| BseYI | CCCAGC | 1 cut(s) | 647 |
| Bsh1236I | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| Bsh1285I | CGRYCG | 1 cut(s) | 444 |
| BshFI | GGCC | 4 cut(s) | 195, 287, 443, 747 |
| BsiEI | CGRYCG | 1 cut(s) | 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 354 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1103 |
| BsiSI | CCGG | 2 cut(s) | 192, 536 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 283, 768, 1155 |
| BsmAI | GTCTC | 2 cut(s) | 275, 428 |
| BsmBI | CGTCTC | 2 cut(s) | 275, 428 |
| BsmI | GAATGC | 1 cut(s) | 370 |
| BsnI | GGCC | 4 cut(s) | 195, 287, 443, 747 |
| BsoBI | CYCGRG | 1 cut(s) | 1103 |
| Bsp1286I | GDGCHC | 1 cut(s) | 354 |
| Bsp143I | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| Bsp68I | TCGCGA | 1 cut(s) | 460 |
| BspANI | GGCC | 4 cut(s) | 195, 287, 443, 747 |
| BspCNI | CTCAG | 2 cut(s) | 438, 541 |
| BspFNI | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| BspHI | TCATGA | 1 cut(s) | 997 |
| BspLI | GGNNCC | 1 cut(s) | 1010 |
| BspMI | ACCTGC | 1 cut(s) | 107 |
| BspPI | GGATC | 3 cut(s) | 224, 536, 969 |
| BspQI | GCTCTTC | 1 cut(s) | 209 |
| BsrDI | GCAATG | 1 cut(s) | 846 |
| BsrI | ACTGG | 2 cut(s) | 250, 772 |
| BssECI | CCNNGG | 8 cut(s) | 212, 223, 375, 545, 600, 712, 1102, 1149 |
| BssMI | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| BssNI | GRCGYC | 1 cut(s) | 455 |
| BssSI | CACGAG | 1 cut(s) | 278 |
| BssT1I | CCWWGG | 3 cut(s) | 375, 600, 1149 |
| Bst2BI | CACGAG | 1 cut(s) | 278 |
| Bst2UI | CCWGG | 3 cut(s) | 214, 546, 714 |
| Bst4CI | ACNGT | 3 cut(s) | 502, 742, 907 |
| Bst6I | CTCTTC | 2 cut(s) | 50, 209 |
| BstACI | GRCGYC | 1 cut(s) | 455 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 349 |
| BstC8I | GCNNGC | 4 cut(s) | 138, 197, 239, 1115 |
| BstDEI | CTNAG | 3 cut(s) | 425, 528, 1164 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstF5I | GGATG | 2 cut(s) | 207, 817 |
| BstFNI | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| BstHHI | GCGC | 4 cut(s) | 136, 142, 268, 644 |
| BstKTI | GATC | 4 cut(s) | 219, 544, 977, 1141 |
| BstMAI | GTCTC | 2 cut(s) | 275, 428 |
| BstMBI | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| BstMCI | CGRYCG | 1 cut(s) | 444 |
| BstNI | CCWGG | 3 cut(s) | 214, 546, 714 |
| BstSCI | CCNGG | 3 cut(s) | 212, 544, 712 |
| BstUI | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| BstV1I | GCAGC | 7 cut(s) | 29, 211, 355, 430, 487, 631, 1162 |
| BstX2I | RGATCY | 1 cut(s) | 974 |
| BstYI | RGATCY | 1 cut(s) | 974 |
| BstZI | CGGCCG | 1 cut(s) | 441 |
| BsuRI | GGCC | 4 cut(s) | 195, 287, 443, 747 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| BtsCI | GGATG | 2 cut(s) | 207, 817 |
| BtsI | GCAGTG | 1 cut(s) | 475 |
| BtsIMutI | CAGTG | 2 cut(s) | 475, 901 |
| BtuMI | TCGCGA | 1 cut(s) | 460 |
| BveI | ACCTGC | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 4 cut(s) | 138, 197, 239, 1115 |
| CaiI | CAGNNNCTG | 1 cut(s) | 938 |
| CciI | TCATGA | 1 cut(s) | 997 |
| CciNI | GCGGCCGC | 1 cut(s) | 441 |
| CfoI | GCGC | 4 cut(s) | 136, 142, 268, 644 |
| Cfr13I | GGNCC | 2 cut(s) | 286, 433 |
| Cfr42I | CCGCGG | 1 cut(s) | 226 |
| CseI | GACGC | 3 cut(s) | 257, 410, 444 |
| Csp6I | GTAC | 4 cut(s) | 634, 927, 1019, 1070 |
| CviAII | CATG | 3 cut(s) | 998, 1013, 1120 |
| CviQI | GTAC | 4 cut(s) | 634, 927, 1019, 1070 |
| DdeI | CTNAG | 3 cut(s) | 425, 528, 1164 |
| DpnI | GATC | 4 cut(s) | 218, 543, 976, 1140 |
| DpnII | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| EaeI | YGGCCR | 3 cut(s) | 193, 441, 745 |
| EagI | CGGCCG | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 2 cut(s) | 50, 209 |
| EarI | CTCTTC | 2 cut(s) | 50, 209 |
| EclXI | CGGCCG | 1 cut(s) | 441 |
| Eco130I | CCWWGG | 3 cut(s) | 375, 600, 1149 |
| Eco47I | GGWCC | 1 cut(s) | 433 |
| Eco52I | CGGCCG | 1 cut(s) | 441 |
| Eco57I | CTGAAG | 1 cut(s) | 807 |
| Eco88I | CYCGRG | 1 cut(s) | 1103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 433 |
| EcoRI | GAATTC | 1 cut(s) | 116 |
| EcoRII | CCWGG | 3 cut(s) | 212, 544, 712 |
| EcoT14I | CCWWGG | 3 cut(s) | 375, 600, 1149 |
| ErhI | CCWWGG | 3 cut(s) | 375, 600, 1149 |
| Esp3I | CGTCTC | 2 cut(s) | 275, 428 |
| FaeI | CATG | 3 cut(s) | 1001, 1016, 1123 |
| FaiI | YATR | 7 cut(s) | 482, 517, 564, 812, 999, 1014, 1121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1125, 1157 |
| FatI | CATG | 3 cut(s) | 997, 1012, 1119 |
| FauI | CCCGC | 5 cut(s) | 98, 145, 181, 271, 339 |
| FokI | GGATG | 2 cut(s) | 194, 804 |
| FspBI | CTAG | 1 cut(s) | 23 |
| GlaI | GCGC | 4 cut(s) | 135, 141, 267, 643 |
| GsaI | CCCAGC | 1 cut(s) | 651 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HaeIII | GGCC | 4 cut(s) | 195, 287, 443, 747 |
| HapII | CCGG | 2 cut(s) | 192, 536 |
| HgaI | GACGC | 3 cut(s) | 257, 410, 444 |
| HhaI | GCGC | 4 cut(s) | 136, 142, 268, 644 |
| Hin1I | GRCGYC | 1 cut(s) | 455 |
| Hin1II | CATG | 3 cut(s) | 1001, 1016, 1123 |
| Hin6I | GCGC | 4 cut(s) | 134, 140, 266, 642 |
| HinP1I | GCGC | 4 cut(s) | 134, 140, 266, 642 |
| HinfI | GANTC | 4 cut(s) | 413, 532, 574, 935 |
| HpaII | CCGG | 2 cut(s) | 192, 536 |
| HphI | GGTGA | 5 cut(s) | 88, 118, 346, 508, 1148 |
| Hpy166II | GTNNAC | 1 cut(s) | 1070 |
| Hpy188I | TCNGA | 3 cut(s) | 531, 585, 1088 |
| Hpy188III | TCNNGA | 5 cut(s) | 113, 459, 752, 972, 998 |
| Hpy8I | GTNNAC | 1 cut(s) | 1070 |
| Hpy99I | CGWCG | 2 cut(s) | 460, 465 |
| HpyAV | CCTTC | 7 cut(s) | 45, 139, 487, 831, 854, 995, 1182 |
| HpyCH4III | ACNGT | 3 cut(s) | 502, 742, 907 |
| HpyCH4IV | ACGT | 1 cut(s) | 1066 |
| HpyCH4V | TGCA | 1 cut(s) | 519 |
| HpyF3I | CTNAG | 3 cut(s) | 425, 528, 1164 |
| HpySE526I | ACGT | 1 cut(s) | 1066 |
| Hsp92I | GRCGYC | 1 cut(s) | 455 |
| Hsp92II | CATG | 3 cut(s) | 1001, 1016, 1123 |
| HspAI | GCGC | 4 cut(s) | 134, 140, 266, 642 |
| KspI | CCGCGG | 1 cut(s) | 226 |
| Kzo9I | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| LguI | GCTCTTC | 1 cut(s) | 209 |
| LmnI | GCTCC | 4 cut(s) | 62, 107, 252, 465 |
| Lsp1109I | GCAGC | 7 cut(s) | 29, 211, 355, 430, 487, 631, 1162 |
| MaeI | CTAG | 1 cut(s) | 23 |
| MaeII | ACGT | 1 cut(s) | 1066 |
| MaeIII | GTNAC | 3 cut(s) | 496, 781, 945 |
| MalI | GATC | 4 cut(s) | 218, 543, 976, 1140 |
| MboI | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| MboII | GAAGA | 8 cut(s) | 37, 40, 196, 242, 328, 349, 598, 667 |
| MflI | RGATCY | 1 cut(s) | 974 |
| MhlI | GDGCHC | 1 cut(s) | 354 |
| MluCI | AATT | 3 cut(s) | 116, 966, 1124 |
| MlyI | GAGTC | 2 cut(s) | 422, 526 |
| MmeI | TCCRAC | 2 cut(s) | 1118, 1136 |
| MseI | TTAA | 5 cut(s) | 668, 689, 1032, 1061, 1127 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1118 |
| MspA1I | CMGCKG | 2 cut(s) | 225, 346 |
| MspI | CCGG | 2 cut(s) | 192, 536 |
| MspR9I | CCNGG | 3 cut(s) | 214, 546, 714 |
| Mva1269I | GAATGC | 1 cut(s) | 370 |
| MvaI | CCWGG | 3 cut(s) | 214, 546, 714 |
| MvnI | CGCG | 8 cut(s) | 134, 140, 225, 266, 268, 411, 440, 460 |
| NdeII | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| NlaIII | CATG | 3 cut(s) | 1001, 1016, 1123 |
| NlaIV | GGNNCC | 1 cut(s) | 1010 |
| NmeAIII | GCCGAG | 1 cut(s) | 385 |
| NmuCI | GTSAC | 2 cut(s) | 496, 781 |
| NotI | GCGGCCGC | 1 cut(s) | 441 |
| NruI | TCGCGA | 1 cut(s) | 460 |
| PagI | TCATGA | 1 cut(s) | 997 |
| PaqCI | CACCTGC | 1 cut(s) | 107 |
| PciSI | GCTCTTC | 1 cut(s) | 209 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 225 |
| PctI | GAATGC | 1 cut(s) | 370 |
| PfeI | GAWTC | 2 cut(s) | 574, 935 |
| PflFI | GACNNNGTC | 1 cut(s) | 307 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 283 |
| PleI | GAGTC | 2 cut(s) | 421, 526 |
| PpsI | GAGTC | 2 cut(s) | 421, 526 |
| PpuMI | RGGWCCY | 1 cut(s) | 433 |
| Psp5II | RGGWCCY | 1 cut(s) | 433 |
| Psp6I | CCWGG | 3 cut(s) | 212, 544, 712 |
| PspFI | CCCAGC | 1 cut(s) | 647 |
| PspGI | CCWGG | 3 cut(s) | 212, 544, 712 |
| PspN4I | GGNNCC | 1 cut(s) | 1010 |
| PspPI | GGNCC | 2 cut(s) | 286, 433 |
| PspPPI | RGGWCCY | 1 cut(s) | 433 |
| PstNI | CAGNNNCTG | 1 cut(s) | 938 |
| PsuI | RGATCY | 1 cut(s) | 974 |
| PsyI | GACNNNGTC | 1 cut(s) | 307 |
| RruI | TCGCGA | 1 cut(s) | 460 |
| RsaI | GTAC | 4 cut(s) | 635, 928, 1020, 1071 |
| RsaNI | GTAC | 4 cut(s) | 634, 927, 1019, 1070 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1118 |
| SacII | CCGCGG | 1 cut(s) | 226 |
| SapI | GCTCTTC | 1 cut(s) | 209 |
| SaqAI | TTAA | 5 cut(s) | 668, 689, 1032, 1061, 1127 |
| Sau3AI | GATC | 4 cut(s) | 216, 541, 974, 1138 |
| Sau96I | GGNCC | 2 cut(s) | 286, 433 |
| SchI | GAGTC | 2 cut(s) | 422, 526 |
| ScrFI | CCNGG | 3 cut(s) | 214, 546, 714 |
| SduI | GDGCHC | 1 cut(s) | 354 |
| Sfr303I | CCGCGG | 1 cut(s) | 226 |
| SgrBI | CCGCGG | 1 cut(s) | 226 |
| SinI | GGWCC | 1 cut(s) | 433 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1118 |
| SmlI | CTYRAG | 2 cut(s) | 242, 1046 |
| SmoI | CTYRAG | 2 cut(s) | 242, 1046 |
| Sse9I | AATT | 3 cut(s) | 116, 966, 1124 |
| SspMI | CTAG | 1 cut(s) | 23 |
| StyD4I | CCNGG | 3 cut(s) | 212, 544, 712 |
| StyI | CCWWGG | 3 cut(s) | 375, 600, 1149 |
| TaaI | ACNGT | 3 cut(s) | 502, 742, 907 |
| TaiI | ACGT | 1 cut(s) | 1069 |
| TaqI | TCGA | 2 cut(s) | 114, 971 |
| TasI | AATT | 3 cut(s) | 116, 966, 1124 |
| TauI | GCSGC | 4 cut(s) | 228, 383, 443, 446 |
| TfiI | GAWTC | 2 cut(s) | 574, 935 |
| Tru1I | TTAA | 5 cut(s) | 668, 689, 1032, 1061, 1127 |
| Tru9I | TTAA | 5 cut(s) | 668, 689, 1032, 1061, 1127 |
| TscAI | CASTG | 2 cut(s) | 475, 901 |
| TseFI | GTSAC | 2 cut(s) | 496, 781 |
| TseI | GCWGC | 8 cut(s) | 5, 17, 199, 343, 418, 475, 644, 1175 |
| Tsp45I | GTSAC | 2 cut(s) | 496, 781 |
| TspDTI | ATGAA | 4 cut(s) | 196, 986, 1014, 1029 |
| TspGWI | ACGGA | 1 cut(s) | 478 |
| TspRI | CASTG | 2 cut(s) | 475, 901 |
| Tth111I | GACNNNGTC | 1 cut(s) | 307 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 1 cut(s) | 433 |
| XapI | RAATTY | 2 cut(s) | 116, 966 |
| XspI | CTAG | 1 cut(s) | 23 |