FvH4_7g18810

RNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
15611115 .. 15614396
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18810.t4

Sequence Viewer

Length: 1194 bp
ATGGCTGCTTCAGTAGCAGCACTAGCTTCACTCCCTTCCTCACTCTTCTTCAAACGCTCCCTCTCCCTCACACCATTCCGCACCCTCCCCCGCCTCACCTGCTCCTCCTCTCTCGAATTCAACATCACCTTCGCGCCCGCGCCCAAGCCCAAACCCGACCCGAACTCCCTCCCCGCCTCCTCCTCCTCCTCCGGCCAGCAGCTCTTCATCCCCTGGATCGTCCGCGGCGAAGATGGCAAGCTCAAGCTCCAGTCGCACCCTCCCGCGCGTCTCCTCCACGAGATGGCCCAAGCCGACACCAAGACCAAGTCCAAGAAGAATAAAGACACCGCCCAGAAGAAGCAGCGGGTGCTCACCGCCGAGCCGAAGCATTCCAAGGCGGCGAGGAGGTTTTACAATGAGAACTTCCGCGAGTCGCAGCGTCTCAGCAAGGTCCTCGCGGCCGCAGGAGTGGCGTCGCGACGGAGCAGTGAGCAGCTTATATTTGATGGGAAGGTGACTGTGAATGGCTCTGTATGCAACACTCCTCAGACTCCGGTTGATCCTGGGAGGGATATTATTTATGTCAATGGGAATCGGCTTCCGAAGAAACTGCCTCCCAAGGTTTATCTTGCCCTCAACAAGCCAAAAGGGTACATTTGCGCTGCTGGGGAGAAGAAATCTGTTTTAAGTCTGTTTGATGATTACTTAAAGAGTTGGGATAAGAGAAACCCAGGAACACCCAGACCACGACTATTTACAGTTGGCCGTCTTGATGTTGCCACTACTGGGTTGATTGTTGTGACCAATGATGGAGATTTTGCTCAAAGTATATCACATCCTTCAGCAAACTTGACAAAGGAATACATTGCCGTAATAGAAGGTTCTGTTAGTAAGAAAAGCCTGATAGCCATCAGTGAGGGAACAGTCATTGATGGTGTCCATTGTACCCCAGATTCTGTGGAGTTACTACCACAACAGCCAGAAATTTCGAGATCCCGTTTGCGTATTGTGGTTCATGAAGGGAGGAACCATGAAGTACGAGAACTTGTTAAAAAGGCTGGACTTGAGATACACTCATTAAAACGTGTACGCATTGGCGGTTTCAGACTTCCAACAAACCTCGGGCTTGGCACGCACATGGAATTAAGACAAGGTGATCTTTCTGCCTTGGGTTGGAAAACTAAGAAAGTTGCTGCGACTGCTGGAAGGTAG

Protein Analysis

398

Amino Acids

43.45

Weight (kDa)

10.13

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S4 PF01479 140 - 185 3.2e-12 S4 domain
PseudoU_synth_2 PF00849 203 - 343 9.2e-19 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009952)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 283
AccII CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
AclWI GGATC 3 cut(s) 224, 536, 969
AcoI YGGCCR 3 cut(s) 193, 441, 745
AcsI RAATTY 2 cut(s) 116, 966
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 455
AfaI GTAC 4 cut(s) 635, 928, 1020, 1071
AfiI CCNNNNNNNGG 3 cut(s) 283, 768, 1155
AflIII ACRYGT 1 cut(s) 1066
AgsI TTSAA 2 cut(s) 52, 121
AjnI CCWGG 3 cut(s) 212, 544, 712
AluBI AGCT 5 cut(s) 26, 202, 241, 247, 478
AluI AGCT 5 cut(s) 26, 202, 241, 247, 478
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 275, 428
AlwI GGATC 3 cut(s) 224, 536, 969
AlwNI CAGNNNCTG 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 1103
AoxI GGCC 4 cut(s) 193, 285, 441, 745
ApeKI GCWGC 8 cut(s) 5, 17, 199, 343, 418, 475, 644, 1175
ApoI RAATTY 2 cut(s) 116, 966
AspLEI GCGC 4 cut(s) 136, 142, 268, 644
AspS9I GGNCC 2 cut(s) 286, 433
AsuHPI GGTGA 5 cut(s) 88, 118, 346, 508, 1148
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 1 cut(s) 433
BauI CACGAG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 7 cut(s) 29, 211, 355, 430, 487, 631, 1162
BccI CCATC 6 cut(s) 227, 277, 482, 785, 899, 908
BceAI ACGGC 2 cut(s) 732, 836
BcgI CGANNNNNNTGC 4 cut(s) 418, 452, 574, 608
BciT130I CCWGG 3 cut(s) 214, 546, 714
BcoDI GTCTC 2 cut(s) 275, 428
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 107
Bme1390I CCNGG 3 cut(s) 214, 546, 714
Bme18I GGWCC 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 1103
BmgT120I GGNCC 2 cut(s) 286, 433
BmiI GGNNCC 1 cut(s) 1010
BmrFI CCNGG 3 cut(s) 214, 546, 714
BmrI ACTGGG 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 227, 1067
BsaBI GATNNNNATC 1 cut(s) 890
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 8 cut(s) 212, 223, 375, 545, 600, 712, 1102, 1149
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 768, 1155
Bse1I ACTGG 2 cut(s) 250, 772
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 890
BseBI CCWGG 3 cut(s) 214, 546, 714
BseDI CCNNGG 8 cut(s) 212, 223, 375, 545, 600, 712, 1102, 1149
BseGI GGATG 2 cut(s) 207, 817
BseJI GATNNNNATC 1 cut(s) 890
BseLI CCNNNNNNNGG 3 cut(s) 283, 768, 1155
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 439, 542
BseNI ACTGG 2 cut(s) 250, 772
BseRI GAGGAG 9 cut(s) 94, 97, 169, 172, 175, 178, 263, 400, 516
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 7 cut(s) 29, 211, 355, 430, 487, 631, 1162
BseYI CCCAGC 1 cut(s) 647
Bsh1236I CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 4 cut(s) 195, 287, 443, 747
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 2 cut(s) 192, 536
BslI CCNNNNNNNGG 3 cut(s) 283, 768, 1155
BsmAI GTCTC 2 cut(s) 275, 428
BsmBI CGTCTC 2 cut(s) 275, 428
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 4 cut(s) 195, 287, 443, 747
BsoBI CYCGRG 1 cut(s) 1103
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 4 cut(s) 216, 541, 974, 1138
Bsp68I TCGCGA 1 cut(s) 460
BspANI GGCC 4 cut(s) 195, 287, 443, 747
BspCNI CTCAG 2 cut(s) 438, 541
BspFNI CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 1 cut(s) 1010
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 3 cut(s) 224, 536, 969
BspQI GCTCTTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 2 cut(s) 250, 772
BssECI CCNNGG 8 cut(s) 212, 223, 375, 545, 600, 712, 1102, 1149
BssMI GATC 4 cut(s) 216, 541, 974, 1138
BssNI GRCGYC 1 cut(s) 455
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 3 cut(s) 375, 600, 1149
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 214, 546, 714
Bst4CI ACNGT 3 cut(s) 502, 742, 907
Bst6I CTCTTC 2 cut(s) 50, 209
BstACI GRCGYC 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 349
BstC8I GCNNGC 4 cut(s) 138, 197, 239, 1115
BstDEI CTNAG 3 cut(s) 425, 528, 1164
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 207, 817
BstFNI CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
BstHHI GCGC 4 cut(s) 136, 142, 268, 644
BstKTI GATC 4 cut(s) 219, 544, 977, 1141
BstMAI GTCTC 2 cut(s) 275, 428
BstMBI GATC 4 cut(s) 216, 541, 974, 1138
BstMCI CGRYCG 1 cut(s) 444
BstNI CCWGG 3 cut(s) 214, 546, 714
BstSCI CCNGG 3 cut(s) 212, 544, 712
BstUI CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
BstV1I GCAGC 7 cut(s) 29, 211, 355, 430, 487, 631, 1162
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
BstZI CGGCCG 1 cut(s) 441
BsuRI GGCC 4 cut(s) 195, 287, 443, 747
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 207, 817
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 475, 901
BtuMI TCGCGA 1 cut(s) 460
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 4 cut(s) 138, 197, 239, 1115
CaiI CAGNNNCTG 1 cut(s) 938
CciI TCATGA 1 cut(s) 997
CciNI GCGGCCGC 1 cut(s) 441
CfoI GCGC 4 cut(s) 136, 142, 268, 644
Cfr13I GGNCC 2 cut(s) 286, 433
Cfr42I CCGCGG 1 cut(s) 226
CseI GACGC 3 cut(s) 257, 410, 444
Csp6I GTAC 4 cut(s) 634, 927, 1019, 1070
CviAII CATG 3 cut(s) 998, 1013, 1120
CviQI GTAC 4 cut(s) 634, 927, 1019, 1070
DdeI CTNAG 3 cut(s) 425, 528, 1164
DpnI GATC 4 cut(s) 218, 543, 976, 1140
DpnII GATC 4 cut(s) 216, 541, 974, 1138
EaeI YGGCCR 3 cut(s) 193, 441, 745
EagI CGGCCG 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 50, 209
EarI CTCTTC 2 cut(s) 50, 209
EclXI CGGCCG 1 cut(s) 441
Eco130I CCWWGG 3 cut(s) 375, 600, 1149
Eco47I GGWCC 1 cut(s) 433
Eco52I CGGCCG 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 1103
EcoO109I RGGNCCY 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 212, 544, 712
EcoT14I CCWWGG 3 cut(s) 375, 600, 1149
ErhI CCWWGG 3 cut(s) 375, 600, 1149
Esp3I CGTCTC 2 cut(s) 275, 428
FaeI CATG 3 cut(s) 1001, 1016, 1123
FaiI YATR 7 cut(s) 482, 517, 564, 812, 999, 1014, 1121
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FatI CATG 3 cut(s) 997, 1012, 1119
FauI CCCGC 5 cut(s) 98, 145, 181, 271, 339
FokI GGATG 2 cut(s) 194, 804
FspBI CTAG 1 cut(s) 23
GlaI GCGC 4 cut(s) 135, 141, 267, 643
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 4 cut(s) 195, 287, 443, 747
HapII CCGG 2 cut(s) 192, 536
HgaI GACGC 3 cut(s) 257, 410, 444
HhaI GCGC 4 cut(s) 136, 142, 268, 644
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 3 cut(s) 1001, 1016, 1123
Hin6I GCGC 4 cut(s) 134, 140, 266, 642
HinP1I GCGC 4 cut(s) 134, 140, 266, 642
HinfI GANTC 4 cut(s) 413, 532, 574, 935
HpaII CCGG 2 cut(s) 192, 536
HphI GGTGA 5 cut(s) 88, 118, 346, 508, 1148
Hpy166II GTNNAC 1 cut(s) 1070
Hpy188I TCNGA 3 cut(s) 531, 585, 1088
Hpy188III TCNNGA 5 cut(s) 113, 459, 752, 972, 998
Hpy8I GTNNAC 1 cut(s) 1070
Hpy99I CGWCG 2 cut(s) 460, 465
HpyAV CCTTC 7 cut(s) 45, 139, 487, 831, 854, 995, 1182
HpyCH4III ACNGT 3 cut(s) 502, 742, 907
HpyCH4IV ACGT 1 cut(s) 1066
HpyCH4V TGCA 1 cut(s) 519
HpyF3I CTNAG 3 cut(s) 425, 528, 1164
HpySE526I ACGT 1 cut(s) 1066
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 3 cut(s) 1001, 1016, 1123
HspAI GCGC 4 cut(s) 134, 140, 266, 642
KspI CCGCGG 1 cut(s) 226
Kzo9I GATC 4 cut(s) 216, 541, 974, 1138
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 4 cut(s) 62, 107, 252, 465
Lsp1109I GCAGC 7 cut(s) 29, 211, 355, 430, 487, 631, 1162
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 3 cut(s) 496, 781, 945
MalI GATC 4 cut(s) 218, 543, 976, 1140
MboI GATC 4 cut(s) 216, 541, 974, 1138
MboII GAAGA 8 cut(s) 37, 40, 196, 242, 328, 349, 598, 667
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 116, 966, 1124
MlyI GAGTC 2 cut(s) 422, 526
MmeI TCCRAC 2 cut(s) 1118, 1136
MseI TTAA 5 cut(s) 668, 689, 1032, 1061, 1127
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 2 cut(s) 225, 346
MspI CCGG 2 cut(s) 192, 536
MspR9I CCNGG 3 cut(s) 214, 546, 714
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 3 cut(s) 214, 546, 714
MvnI CGCG 8 cut(s) 134, 140, 225, 266, 268, 411, 440, 460
NdeII GATC 4 cut(s) 216, 541, 974, 1138
NlaIII CATG 3 cut(s) 1001, 1016, 1123
NlaIV GGNNCC 1 cut(s) 1010
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 496, 781
NotI GCGGCCGC 1 cut(s) 441
NruI TCGCGA 1 cut(s) 460
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 574, 935
PflFI GACNNNGTC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 283
PleI GAGTC 2 cut(s) 421, 526
PpsI GAGTC 2 cut(s) 421, 526
PpuMI RGGWCCY 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 433
Psp6I CCWGG 3 cut(s) 212, 544, 712
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 3 cut(s) 212, 544, 712
PspN4I GGNNCC 1 cut(s) 1010
PspPI GGNCC 2 cut(s) 286, 433
PspPPI RGGWCCY 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 1 cut(s) 974
PsyI GACNNNGTC 1 cut(s) 307
RruI TCGCGA 1 cut(s) 460
RsaI GTAC 4 cut(s) 635, 928, 1020, 1071
RsaNI GTAC 4 cut(s) 634, 927, 1019, 1070
RseI CAYNNNNRTG 1 cut(s) 1118
SacII CCGCGG 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 5 cut(s) 668, 689, 1032, 1061, 1127
Sau3AI GATC 4 cut(s) 216, 541, 974, 1138
Sau96I GGNCC 2 cut(s) 286, 433
SchI GAGTC 2 cut(s) 422, 526
ScrFI CCNGG 3 cut(s) 214, 546, 714
SduI GDGCHC 1 cut(s) 354
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 2 cut(s) 242, 1046
SmoI CTYRAG 2 cut(s) 242, 1046
Sse9I AATT 3 cut(s) 116, 966, 1124
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 212, 544, 712
StyI CCWWGG 3 cut(s) 375, 600, 1149
TaaI ACNGT 3 cut(s) 502, 742, 907
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 2 cut(s) 114, 971
TasI AATT 3 cut(s) 116, 966, 1124
TauI GCSGC 4 cut(s) 228, 383, 443, 446
TfiI GAWTC 2 cut(s) 574, 935
Tru1I TTAA 5 cut(s) 668, 689, 1032, 1061, 1127
Tru9I TTAA 5 cut(s) 668, 689, 1032, 1061, 1127
TscAI CASTG 2 cut(s) 475, 901
TseFI GTSAC 2 cut(s) 496, 781
TseI GCWGC 8 cut(s) 5, 17, 199, 343, 418, 475, 644, 1175
Tsp45I GTSAC 2 cut(s) 496, 781
TspDTI ATGAA 4 cut(s) 196, 986, 1014, 1029
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 2 cut(s) 475, 901
Tth111I GACNNNGTC 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 2 cut(s) 116, 966
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.