Prupe.2G208900_v2.0.a1

RNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
24207149 .. 24210934
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G208900.1

Sequence Viewer

Length: 1182 bp
ATGGCTTCAGTGGCAGCTGCTGCACTAGCTTCGCTCTCTTCTTCACTCTTCTCCAAACCCTCACTCTCTCTCATACCCATCCGTACACTTCCTCGCATCACCTGTTCCCTCTCTACTTCTTCTTCTTCTTCCTCTCTAGAGTTCAACATCACCTTCGCGCCATCTAAGCCCAAGCCCAAACTCAAACCCGATTCCGCAGAGCCCGACCCGGAGGCTCTCGCCGGCCAGCTCATCATCCCGTGGATCGTCCGCGGCGAGGATGGCAACCTCAAGCTCCAGTCGCACCCTCCTGCGCGTTTCCTCCAGGCCATTGAGACCAAGAGCAAGACGAAGAAGAAGAAGGAGGGCGCTGAGAAGCGCGTGCCCACAGCTGAGCCCAAGTATTCAAAAGCCGCTCGTAGGTTCTACAACGAAAATTTCAGAGACGCTTCGCAGCGGCTCAGCAAGGTTCTCGCTGCTGCCGGAGTGGCGTCAAGGAGGAGCAGCGAGCAACTTATTTTTGATGGGAAGGTCACTGTGAATGGCTCCGTATGCAATACTCCTCAGTCTCGAGTTGATCCTGGAAGGGATATCATATATGTCAATGGAAATCGGCTTCCAAAGAGACTGCCTCCAAAGGTTTATCTTGCCCTTAACAAGCCTAAAGGGTACATTTGCGCATCTGGGGAGAATAAATCTGTGTTGAGTTTATTTGAAGATTATTTGAAGACTTGGGATAAGAGAAATTCCGGAATACCCAGACCACGACTATTTACTGTTGGCCGTCTTGATGTTGCTACAACTGGGTTGATCATTGTGACTAATGATGGAGATTTTGCTCAAAAAATATCACATCCTTCATCAAACTTGTCAAAGGAATACATTGCAGCAATAGAAGGTGTAGTCAGTAAGCGGCACCTGTTAGCCATCAGTGAGGGAACAGTCATTGAAGGCGTCCATTGCACCCCAGATTCTGTGGAGTTGCTACCACAACAGCCAGATATGTCAAGACCCCGTTTGCGTATTGTGGTTCATGAAGGGAGGAACCACGAAGTACGAGAACTAGTGAAAAATGCTGGACTTGAGATACATTCATTAAAGCGCGTACGCATAGGTGGTTTCAGGCTTCCATCAGATCTTGGGCTTGGAAAGCACATGGCTTTAAAACAAGGCGATCTTTCCGCCTTGGGTTGGAAGAGTTAG

Protein Analysis

394

Amino Acids

42.95

Weight (kDa)

9.94

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009952)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 894
AccBSI CCGCTC 1 cut(s) 395
AccII CGCG 5 cut(s) 158, 252, 295, 360, 1083
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 7 cut(s) 195, 250, 252, 393, 436, 892, 1161
AclWI GGATC 2 cut(s) 251, 551
AcoI YGGCCR 2 cut(s) 223, 760
AcsI RAATTY 2 cut(s) 415, 724
AcyI GRCGYC 2 cut(s) 470, 933
AfaI GTAC 4 cut(s) 85, 650, 1035, 1086
AfiI CCNNNNNNNGG 3 cut(s) 256, 399, 1170
AgsI TTSAA 5 cut(s) 145, 387, 695, 706, 929
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 2 cut(s) 303, 559
AluBI AGCT 5 cut(s) 17, 29, 229, 274, 371
AluI AGCT 5 cut(s) 17, 29, 229, 274, 371
Alw26I GTCTC 4 cut(s) 308, 417, 552, 598
AlwI GGATC 2 cut(s) 251, 551
AlwNI CAGNNNCTG 2 cut(s) 20, 953
Ama87I CYCGRG 1 cut(s) 549
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 3 cut(s) 223, 306, 760
ApeKI GCWGC 8 cut(s) 14, 17, 20, 433, 455, 458, 483, 866
ApoI RAATTY 2 cut(s) 415, 724
AspLEI GCGC 6 cut(s) 160, 295, 350, 360, 659, 1083
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 91, 142
AvaI CYCGRG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 894
BanII GRGCYC 2 cut(s) 204, 378
BbsI GAAGAC 1 cut(s) 713
BbvI GCAGC 8 cut(s) 4, 7, 26, 442, 445, 445, 495, 878
BccI CCATC 7 cut(s) 86, 169, 254, 497, 800, 914, 1117
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 4 cut(s) 12, 46, 433, 467
BciT130I CCWGG 2 cut(s) 305, 561
BclI TGATCA 1 cut(s) 789
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 4 cut(s) 308, 417, 552, 598
BcuI ACTAGT 1 cut(s) 1042
BfaI CTAG 3 cut(s) 26, 137, 1043
BfoI RGCGCY 1 cut(s) 351
BglI GCCNNNNNGGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 1114
BlpI GCTNAGC 2 cut(s) 372, 440
Bme1390I CCNGG 3 cut(s) 209, 305, 561
BmeT110I CYCGRG 1 cut(s) 549
BmiI GGNNCC 3 cut(s) 526, 896, 1025
BmrFI CCNGG 3 cut(s) 209, 305, 561
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 2 cut(s) 105, 668
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 2 cut(s) 260, 287
Bpu1102I GCTNAGC 2 cut(s) 372, 440
BpuEI CTTGAG 2 cut(s) 254, 1082
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 470, 933
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 239, 250, 1164
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 399, 1170
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 277, 787
Bse3DI GCAATG 2 cut(s) 861, 937
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 2 cut(s) 305, 561
BseDI CCNNGG 3 cut(s) 239, 250, 1164
BseGI GGATG 4 cut(s) 78, 234, 265, 832
BseLI CCNNNNNNNGG 3 cut(s) 256, 399, 1170
BseMI GCAATG 2 cut(s) 861, 937
BseMII CTCAG 4 cut(s) 342, 363, 454, 557
BseNI ACTGG 2 cut(s) 277, 787
BseRI GAGGAG 2 cut(s) 493, 531
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 8 cut(s) 4, 7, 26, 442, 445, 445, 495, 878
BsgI GTGCAG 1 cut(s) 6
Bsh1236I CGCG 5 cut(s) 158, 252, 295, 360, 1083
BshFI GGCC 3 cut(s) 225, 308, 762
BshNI GGYRCC 1 cut(s) 894
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 4 cut(s) 209, 222, 462, 729
BsiWI CGTACG 1 cut(s) 1084
BslI CCNNNNNNNGG 3 cut(s) 256, 399, 1170
BsmAI GTCTC 4 cut(s) 308, 417, 552, 598
BsmBI CGTCTC 1 cut(s) 417
BsnI GGCC 3 cut(s) 225, 308, 762
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 204, 366, 378
Bsp13I TCCGGA 1 cut(s) 728
Bsp143I GATC 5 cut(s) 243, 556, 789, 1114, 1153
Bsp1720I GCTNAGC 2 cut(s) 372, 440
BspACI CCGC 7 cut(s) 195, 250, 252, 393, 436, 892, 1161
BspANI GGCC 3 cut(s) 225, 308, 762
BspCNI CTCAG 4 cut(s) 343, 364, 453, 556
BspEI TCCGGA 1 cut(s) 728
BspFNI CGCG 5 cut(s) 158, 252, 295, 360, 1083
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 3 cut(s) 526, 896, 1025
BspPI GGATC 2 cut(s) 251, 551
BspT107I GGYRCC 1 cut(s) 894
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 861, 937
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 277, 787
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 239, 250, 1164
BssMI GATC 5 cut(s) 243, 556, 789, 1114, 1153
BssNI GRCGYC 2 cut(s) 470, 933
BssT1I CCWWGG 1 cut(s) 1164
Bst2UI CCWGG 2 cut(s) 305, 561
Bst4CI ACNGT 3 cut(s) 517, 757, 922
Bst6I CTCTTC 3 cut(s) 43, 53, 1169
BstACI GRCGYC 2 cut(s) 470, 933
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 223, 227, 362, 488
BstDEI CTNAG 5 cut(s) 165, 351, 372, 440, 543
BstDSI CCRYGG 2 cut(s) 239, 250
BstF5I GGATG 4 cut(s) 78, 234, 265, 832
BstFNI CGCG 5 cut(s) 158, 252, 295, 360, 1083
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 6 cut(s) 160, 295, 350, 360, 659, 1083
BstKTI GATC 5 cut(s) 246, 559, 792, 1117, 1156
BstMAI GTCTC 4 cut(s) 308, 417, 552, 598
BstMBI GATC 5 cut(s) 243, 556, 789, 1114, 1153
BstNI CCWGG 2 cut(s) 305, 561
BstSCI CCNGG 3 cut(s) 207, 303, 559
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 5 cut(s) 158, 252, 295, 360, 1083
BstV1I GCAGC 8 cut(s) 4, 7, 26, 442, 445, 445, 495, 878
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 1114
BstYI RGATCY 1 cut(s) 1114
BsuRI GGCC 3 cut(s) 225, 308, 762
BtgI CCRYGG 2 cut(s) 239, 250
BtsCI GGATG 4 cut(s) 78, 234, 265, 832
BtsIMutI CAGTG 3 cut(s) 15, 513, 916
Cac8I GCNNGC 4 cut(s) 223, 227, 362, 488
CaiI CAGNNNCTG 2 cut(s) 20, 953
CciI TCATGA 1 cut(s) 1012
CfoI GCGC 6 cut(s) 160, 295, 350, 360, 659, 1083
Cfr10I RCCGGY 1 cut(s) 221
Cfr42I CCGCGG 1 cut(s) 253
CseI GACGC 3 cut(s) 434, 459, 922
Csp6I GTAC 4 cut(s) 84, 649, 1034, 1085
CviAII CATG 2 cut(s) 1013, 1135
CviQI GTAC 4 cut(s) 84, 649, 1034, 1085
DdeI CTNAG 5 cut(s) 165, 351, 372, 440, 543
DpnI GATC 5 cut(s) 245, 558, 791, 1116, 1155
DpnII GATC 5 cut(s) 243, 556, 789, 1114, 1153
DraI TTTAAA 1 cut(s) 1143
EaeI YGGCCR 2 cut(s) 223, 760
Eam1104I CTCTTC 3 cut(s) 43, 53, 1169
EarI CTCTTC 3 cut(s) 43, 53, 1169
EciI GGCGGA 1 cut(s) 1150
Eco130I CCWWGG 1 cut(s) 1164
Eco24I GRGCYC 2 cut(s) 204, 378
Eco31I GGTCTC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 571
Eco88I CYCGRG 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 303, 559
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 1164
EcoT38I GRGCYC 2 cut(s) 204, 378
ErhI CCWWGG 1 cut(s) 1164
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 2 cut(s) 1016, 1138
FaiI YATR 9 cut(s) 74, 532, 575, 577, 579, 983, 1014, 1091, 1136
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FatI CATG 2 cut(s) 1012, 1134
FbaI TGATCA 1 cut(s) 789
FokI GGATG 4 cut(s) 65, 221, 272, 819
FriOI GRGCYC 2 cut(s) 204, 378
FspBI CTAG 3 cut(s) 26, 137, 1043
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 6 cut(s) 159, 294, 349, 359, 658, 1082
GsuI CTGGAG 2 cut(s) 260, 287
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 3 cut(s) 225, 308, 762
HapII CCGG 4 cut(s) 209, 222, 462, 729
HgaI GACGC 3 cut(s) 434, 459, 922
HhaI GCGC 6 cut(s) 160, 295, 350, 360, 659, 1083
Hin1I GRCGYC 2 cut(s) 470, 933
Hin1II CATG 2 cut(s) 1016, 1138
Hin6I GCGC 6 cut(s) 158, 293, 348, 358, 657, 1081
HinP1I GCGC 6 cut(s) 158, 293, 348, 358, 657, 1081
HinfI GANTC 2 cut(s) 191, 950
HpaII CCGG 4 cut(s) 209, 222, 462, 729
HphI GGTGA 2 cut(s) 91, 142
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 422, 1114
Hpy188III TCNNGA 6 cut(s) 137, 549, 729, 767, 987, 1013
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 8 cut(s) 163, 334, 502, 558, 846, 869, 923, 1010
HpyCH4III ACNGT 3 cut(s) 517, 757, 922
HpyCH4V TGCA 4 cut(s) 23, 534, 866, 942
HpyF3I CTNAG 5 cut(s) 165, 351, 372, 440, 543
Hsp92I GRCGYC 2 cut(s) 470, 933
Hsp92II CATG 2 cut(s) 1016, 1138
HspAI GCGC 6 cut(s) 158, 293, 348, 358, 657, 1081
Kpn2I TCCGGA 1 cut(s) 728
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 789
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 5 cut(s) 243, 556, 789, 1114, 1153
LmnI GCTCC 3 cut(s) 279, 480, 530
Lsp1109I GCAGC 8 cut(s) 4, 7, 26, 442, 445, 445, 495, 878
LweI GCATC 2 cut(s) 105, 668
MaeI CTAG 3 cut(s) 26, 137, 1043
MaeIII GTNAC 2 cut(s) 511, 796
MalI GATC 5 cut(s) 245, 558, 791, 1116, 1155
MbiI CCGCTC 1 cut(s) 395
MboI GATC 5 cut(s) 243, 556, 789, 1114, 1153
MflI RGATCY 1 cut(s) 1114
MhlI GDGCHC 3 cut(s) 204, 366, 378
MluCI AATT 2 cut(s) 415, 724
MmeI TCCRAC 1 cut(s) 1151
MroI TCCGGA 1 cut(s) 728
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 3 cut(s) 633, 1076, 1142
MspA1I CMGCKG 4 cut(s) 17, 252, 371, 436
MspI CCGG 4 cut(s) 209, 222, 462, 729
MspR9I CCNGG 3 cut(s) 209, 305, 561
MvaI CCWGG 2 cut(s) 305, 561
MvnI CGCG 5 cut(s) 158, 252, 295, 360, 1083
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 209
NdeII GATC 5 cut(s) 243, 556, 789, 1114, 1153
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 2 cut(s) 1016, 1138
NlaIV GGNNCC 3 cut(s) 526, 896, 1025
NmuCI GTSAC 2 cut(s) 511, 796
NsbI TGCGCA 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 549
PagI TCATGA 1 cut(s) 1012
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 191, 950
Pfl23II CGTACG 1 cut(s) 1084
PfoI TCCNGGA 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 303, 559
PspGI CCWGG 2 cut(s) 303, 559
PspLI CGTACG 1 cut(s) 1084
PspN4I GGNNCC 3 cut(s) 526, 896, 1025
PstNI CAGNNNCTG 2 cut(s) 20, 953
PsuI RGATCY 1 cut(s) 1114
PvuII CAGCTG 2 cut(s) 17, 371
RsaI GTAC 4 cut(s) 85, 650, 1035, 1086
RsaNI GTAC 4 cut(s) 84, 649, 1034, 1085
SacII CCGCGG 1 cut(s) 253
SaqAI TTAA 3 cut(s) 633, 1076, 1142
Sau3AI GATC 5 cut(s) 243, 556, 789, 1114, 1153
ScrFI CCNGG 3 cut(s) 209, 305, 561
SduI GDGCHC 3 cut(s) 204, 366, 378
SfaNI GCATC 2 cut(s) 105, 668
Sfr274I CTCGAG 1 cut(s) 549
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 549
SmlI CTYRAG 3 cut(s) 269, 549, 1061
SmoI CTYRAG 3 cut(s) 269, 549, 1061
SpeI ACTAGT 1 cut(s) 1042
Sse9I AATT 2 cut(s) 415, 724
SsiI CCGC 7 cut(s) 195, 250, 252, 393, 436, 892, 1161
SspMI CTAG 3 cut(s) 26, 137, 1043
StyD4I CCNGG 3 cut(s) 207, 303, 559
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 3 cut(s) 517, 757, 922
TaqI TCGA 1 cut(s) 550
TasI AATT 2 cut(s) 415, 724
TauI GCSGC 4 cut(s) 255, 395, 439, 895
TfiI GAWTC 2 cut(s) 191, 950
Tru1I TTAA 3 cut(s) 633, 1076, 1142
Tru9I TTAA 3 cut(s) 633, 1076, 1142
TscAI CASTG 3 cut(s) 15, 520, 916
TseFI GTSAC 2 cut(s) 511, 796
TseI GCWGC 8 cut(s) 14, 17, 20, 433, 455, 458, 483, 866
Tsp45I GTSAC 2 cut(s) 511, 796
TspDTI ATGAA 4 cut(s) 828, 1001, 1029, 1062
TspGWI ACGGA 2 cut(s) 71, 517
TspRI CASTG 3 cut(s) 15, 520, 916
XapI RAATTY 2 cut(s) 415, 724
XbaI TCTAGA 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 3 cut(s) 26, 137, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.