Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0024208

Physical Location & Seq

Genomic Coordinates Reverse (-)

17343489 .. 17344853

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGGTGGTTTAGAGCAGGGGCTGGTGTGGCAAAGCTTGCCGTTAGGAGGTCGTTATCGACTAGCGGATCCTACAATGTGACAAGGAGTGTTGTTCCGGCGCAGAATCGGTACTTGCACACCACAATATGCAAGTCCAAGGCGGAGGCTGCGCCGGTTCCTAGGCCGGTGCCGCTTTCTAGGCTTACTGATAGTTTTTTGGATGGGACCAGCAGTGTGTATTTGGAAGGACTTCAGAGGGCCTGGGAAGCTGACCCCAATAGCGTTGATGAGTCGTGGGATAATTTCTTTAGGAACTTTGTGGGGCAGGCCTCTACGTCGCCTGGGATTTCGGGGCAGACTATTCAGGAGAGTATGAGACTGTTGCTGCTTGTGAGGGCTTACCAGGTTAATGGTCATATGAAGGCTAAACTAGATCCTTTGGGCTTGGAGCAGAGGGATATCCCCGATGATTTGGACCCTGCGCTATATGGGTTCACTGAGGCTGATCTTGACAGGGAGTTCTTTTTGGGGGTTTGGAGGATGGCTGGGTTTCTTTCTGAGAATCGTCCAGTGCAGACCCTTAGGTCCATATTGACTCGGCTTGAGCAGGCCTATTGTGGGAGCATTGGGTATGAGTATATGCATATTGCTGATAGAAACAAATGTAACTGGTTGAGGGATAAGATTGAGACCCCTACGACGATGCAGTATAACCGGCAGCGCCGTGAGGTTATTCTTGACAGGCTTATTTGGAGTACACAGTTTGAGAACTTCTTGGCTACTAAGTGGACAACAGCAAAGAGGTTCGGGCTTGAAGGTTGTGAAACTCTCATTCCTGCTGATTCTGATGTTGTATGCAGCTCACTGTCGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCGATGGAGAATCCAAATGCATTGGTGATTTGGGAAGCTCAATTTGGTGATTTTGCAAATGGGGCTCAAGTTATCAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

323

Amino Acids

36.35

Weight (kDa)

5.58

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	64 - 101	8.7e-15	2-oxoglutarate dehydrogenase N-terminus
Transket_pyr	PF02779	275 - 315	1.6e-08	Transketolase, pyrimidine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024208)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21781
pyrus_communis	pycom01g14970
rosa_multiflora	Rmu_co8298685.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	3 cut(s)	66, 143, 173
AclWI	GGATC	3 cut(s)	63, 76, 410
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	113, 739
AfiI	CCNNNNNNNGG	2 cut(s)	48, 600
AgsI	TTSAA	2 cut(s)	797, 875
AjnI	CCWGG	3 cut(s)	242, 322, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AluBI	AGCT	4 cut(s)	37, 251, 843, 923
AluI	AGCT	4 cut(s)	37, 251, 843, 923
Alw26I	GTCTC	2 cut(s)	352, 665
AlwI	GGATC	3 cut(s)	63, 76, 410
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	4 cut(s)	164, 240, 309, 591
ApeKI	GCWGC	4 cut(s)	149, 367, 700, 840
Asp700I	GAANNNNTTC	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	4 cut(s)	103, 154, 466, 705
AspS9I	GGNCC	4 cut(s)	207, 240, 457, 567
AsuHPI	GGTGA	2 cut(s)	922, 944
AvaII	GGWCC	3 cut(s)	207, 457, 567
AvrII	CCTAGG	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	952
BbvI	GCAGC	4 cut(s)	136, 354, 712, 852
BccI	CCATC	3 cut(s)	197, 517, 883
BceAI	ACGGC	2 cut(s)	26, 690
BciT130I	CCWGG	3 cut(s)	244, 324, 386
BcoDI	GTCTC	2 cut(s)	352, 665
BfaI	CTAG	4 cut(s)	63, 162, 180, 413
BfoI	RGCGCY	1 cut(s)	706
BisI	GCNGC	5 cut(s)	150, 173, 368, 701, 841
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	5 cut(s)	151, 174, 369, 702, 842
Bme1390I	CCNGG	3 cut(s)	244, 324, 386
Bme18I	GGWCC	3 cut(s)	207, 457, 567
BmgT120I	GGNCC	4 cut(s)	207, 240, 457, 567
BmiI	GGNNCC	5 cut(s)	70, 159, 171, 208, 459
BmrFI	CCNGG	3 cut(s)	244, 324, 386
BmsI	GCATC	1 cut(s)	675
BpuEI	CTTGAG	2 cut(s)	605, 936
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	138, 161, 243, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 600
Bse118I	RCCGGY	3 cut(s)	154, 166, 696
Bse1I	ACTGG	2 cut(s)	551, 656
Bse21I	CCTNAGG	1 cut(s)	563
BseBI	CCWGG	3 cut(s)	244, 324, 386
BseDI	CCNNGG	4 cut(s)	138, 161, 243, 323
BseGI	GGATG	2 cut(s)	208, 528
BseLI	CCNNNNNNNGG	2 cut(s)	48, 600
BseMII	CTCAG	2 cut(s)	471, 531
BseNI	ACTGG	2 cut(s)	551, 656
BseXI	GCAGC	4 cut(s)	136, 354, 712, 852
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	4 cut(s)	166, 242, 311, 593
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	98, 155, 167, 697
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	48, 600
BsmAI	GTCTC	2 cut(s)	352, 665
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	166, 242, 311, 593
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	3 cut(s)	68, 415, 487
BspACI	CCGC	3 cut(s)	66, 143, 173
BspANI	GGCC	4 cut(s)	166, 242, 311, 593
BspCNI	CTCAG	2 cut(s)	472, 532
BspLI	GGNNCC	5 cut(s)	70, 159, 171, 208, 459
BspPI	GGATC	3 cut(s)	63, 76, 410
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	3 cut(s)	154, 166, 696
BsrI	ACTGG	2 cut(s)	551, 656
BssAI	RCCGGY	3 cut(s)	154, 166, 696
BssECI	CCNNGG	4 cut(s)	138, 161, 243, 323
BssMI	GATC	3 cut(s)	68, 415, 487
BssT1I	CCWWGG	2 cut(s)	138, 161
Bst2UI	CCWGG	3 cut(s)	244, 324, 386
Bst4CI	ACNGT	3 cut(s)	363, 744, 849
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	39, 309, 591
BstDEI	CTNAG	4 cut(s)	480, 540, 563, 765
BstF5I	GGATG	2 cut(s)	208, 528
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	4 cut(s)	103, 154, 466, 705
BstKTI	GATC	3 cut(s)	71, 418, 490
BstMAI	GTCTC	2 cut(s)	352, 665
BstMBI	GATC	3 cut(s)	68, 415, 487
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 38, 149, 172, 181, 248, 947
BstNI	CCWGG	3 cut(s)	244, 324, 386
BstSCI	CCNGG	3 cut(s)	242, 322, 384
BstV1I	GCAGC	4 cut(s)	136, 354, 712, 852
BstX2I	RGATCY	2 cut(s)	68, 415
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	2 cut(s)	68, 415
Bsu36I	CCTNAGG	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	166, 242, 311, 593
BtsCI	GGATG	2 cut(s)	208, 528
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	4 cut(s)	220, 477, 558, 845
Cac8I	GCNNGC	3 cut(s)	39, 309, 591
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	4 cut(s)	103, 154, 466, 705
Cfr10I	RCCGGY	3 cut(s)	154, 166, 696
Cfr13I	GGNCC	4 cut(s)	207, 240, 457, 567
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	112, 738
CviQI	GTAC	2 cut(s)	112, 738
DdeI	CTNAG	4 cut(s)	480, 540, 563, 765
DpnI	GATC	3 cut(s)	70, 417, 489
DpnII	GATC	3 cut(s)	68, 415, 487
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	138, 161
Eco147I	AGGCCT	2 cut(s)	311, 593
Eco24I	GRGCYC	1 cut(s)	952
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	207, 457, 567
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	242, 322, 384
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	138, 161
EcoT22I	ATGCAT	2 cut(s)	627, 907
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	2 cut(s)	138, 161
FaqI	GGGAC	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	150, 173, 368, 701, 841
FokI	GGATG	2 cut(s)	215, 535
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	5 cut(s)	150, 173, 368, 701, 841
FspBI	CTAG	4 cut(s)	63, 162, 180, 413
GlaI	GCGC	4 cut(s)	102, 153, 465, 704
GluI	GCNGC	5 cut(s)	150, 173, 368, 701, 841
GsaI	CCCAGC	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	4 cut(s)	166, 242, 311, 593
HapII	CCGG	4 cut(s)	98, 155, 167, 697
HhaI	GCGC	4 cut(s)	103, 154, 466, 705
Hin6I	GCGC	4 cut(s)	101, 152, 464, 703
HinP1I	GCGC	4 cut(s)	101, 152, 464, 703
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	6 cut(s)	106, 272, 544, 577, 824, 895
HpaII	CCGG	4 cut(s)	98, 155, 167, 697
HphI	GGTGA	2 cut(s)	922, 944
Hpy166II	GTNNAC	3 cut(s)	477, 740, 771
Hpy188I	TCNGA	4 cut(s)	237, 541, 829, 853
Hpy188III	TCNNGA	3 cut(s)	347, 491, 719
Hpy8I	GTNNAC	3 cut(s)	477, 740, 771
Hpy99I	CGWCG	2 cut(s)	322, 685
HpyAV	CCTTC	3 cut(s)	221, 397, 791
HpyCH4III	ACNGT	3 cut(s)	363, 744, 849
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	8 cut(s)	118, 132, 556, 625, 688, 840, 905, 941
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 38, 149, 172, 181, 248, 947
HpyF3I	CTNAG	4 cut(s)	480, 540, 563, 765
HpySE526I	ACGT	1 cut(s)	317
HspAI	GCGC	4 cut(s)	101, 152, 464, 703
Kzo9I	GATC	3 cut(s)	68, 415, 487
LmnI	GCTCC	2 cut(s)	430, 603
Lsp1109I	GCAGC	4 cut(s)	136, 354, 712, 852
LweI	GCATC	1 cut(s)	675
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	4 cut(s)	63, 162, 180, 413
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	79, 647, 881
MalI	GATC	3 cut(s)	70, 417, 489
MboI	GATC	3 cut(s)	68, 415, 487
MflI	RGATCY	2 cut(s)	68, 415
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	3 cut(s)	283, 875, 926
MlyI	GAGTC	2 cut(s)	281, 571
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	2 cut(s)	627, 907
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	390
MspI	CCGG	4 cut(s)	98, 155, 167, 697
MspR9I	CCNGG	3 cut(s)	244, 324, 386
MvaI	CCWGG	3 cut(s)	244, 324, 386
MwoI	GCNNNNNNNGC	7 cut(s)	29, 38, 149, 172, 181, 248, 947
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	3 cut(s)	68, 415, 487
NlaIV	GGNNCC	5 cut(s)	70, 159, 171, 208, 459
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	2 cut(s)	627, 907
PceI	AGGCCT	2 cut(s)	311, 593
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	106, 544, 824, 895
PkrI	GCNGC	5 cut(s)	151, 174, 369, 702, 842
PleI	GAGTC	2 cut(s)	280, 571
PpsI	GAGTC	2 cut(s)	280, 571
Psp6I	CCWGG	3 cut(s)	242, 322, 384
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	3 cut(s)	242, 322, 384
PspN4I	GGNNCC	5 cut(s)	70, 159, 171, 208, 459
PspPI	GGNCC	4 cut(s)	207, 240, 457, 567
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	68, 415
RsaI	GTAC	2 cut(s)	113, 739
RsaNI	GTAC	2 cut(s)	112, 738
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	150, 173, 368, 701, 841
Sau3AI	GATC	3 cut(s)	68, 415, 487
Sau96I	GGNCC	4 cut(s)	207, 240, 457, 567
SchI	GAGTC	2 cut(s)	281, 571
ScrFI	CCNGG	3 cut(s)	244, 324, 386
SduI	GDGCHC	1 cut(s)	952
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	675
SinI	GGWCC	3 cut(s)	207, 457, 567
SmlI	CTYRAG	2 cut(s)	584, 951
SmoI	CTYRAG	2 cut(s)	584, 951
Sse9I	AATT	3 cut(s)	283, 875, 926
SseBI	AGGCCT	2 cut(s)	311, 593
SsiI	CCGC	3 cut(s)	66, 143, 173
SspMI	CTAG	4 cut(s)	63, 162, 180, 413
StuI	AGGCCT	2 cut(s)	311, 593
StyD4I	CCNGG	3 cut(s)	242, 322, 384
StyI	CCWWGG	2 cut(s)	138, 161
TaaI	ACNGT	3 cut(s)	363, 744, 849
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	59, 887
TasI	AATT	3 cut(s)	283, 875, 926
TatI	WGTACW	1 cut(s)	737
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	4 cut(s)	106, 544, 824, 895
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	4 cut(s)	220, 484, 558, 852
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	4 cut(s)	149, 367, 700, 840
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	4 cut(s)	220, 484, 558, 852
VpaK11BI	GGWCC	3 cut(s)	207, 457, 567
XmaJI	CCTAGG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	63, 162, 180, 413
Zsp2I	ATGCAT	2 cut(s)	627, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.