Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298685.1

Orthogroup ID

OG0024208

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 776

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

atgaggtgggttagagcagggtctagtgtggcaaagtttgccattaggagatcactatcgaataggcatgtagttcctttgcaaaatcgatacttgcaaaccacaatgtgcaagtattccaaggcaggggctgccccggttcctcggccggtgccgctttcgaagctgactgatagtttcttggatggaagcaatagtgtttatttagaggggcttcagagggcctgggaggctgatcccagcagtgttgatgaatcctgggataatttctttaggaattttgtggggcaggcctctacctcccctggagtttcggggcagaccattcaagagagtatgcgtttgttgttgcttgtgagggcttatcaggttacaggtcatatgaaagctaaattggatcctttggcattgcaggagaggaaagtcccagatgagttggaccctgcttcatatgggtttactgaggctgatcttgatagggagttctttttaggggtttggaggatagctgggtttctggctgagaatcgtccggtgcagacccttaggtccatattgacccggctagagcaggcttactgtgggagcattgggtatgagtatatgcacattgcggatcgtaacaaatgtaactggttgagagaaaagattgagactccaacaatgatgcaatacaatgggcagcgccgtgaggtttttcttgacaggcttatttggagtacacagtttgagaacttcttgcactctaagtggaaaacagcaaagaggtttgggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

258

Amino Acids

29.68

Weight (kDa)

9.46

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024208)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21781
pyrus_communis	pycom01g14970
rosa_multiflora	Rmu_co8298685.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	151
AciI	CCGC	2 cut(s)	155, 614
AclWI	GGATC	4 cut(s)	230, 392, 405, 624
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	224, 257, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	166, 389, 509
AluI	AGCT	3 cut(s)	166, 389, 509
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	4 cut(s)	230, 392, 405, 624
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	146, 222, 291
ApeKI	GCWGC	2 cut(s)	131, 682
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	3 cut(s)	222, 439, 549
AsuC2I	CCSGG	2 cut(s)	137, 562
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	439, 549
AxyI	CCTNAGG	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	118, 694
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	3 cut(s)	226, 259, 306
BcnI	CCSGG	2 cut(s)	137, 562
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	24, 566
BfoI	RGCGCY	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	132, 155, 683
BlsI	GCNGC	3 cut(s)	133, 156, 684
Bme1390I	CCNGG	5 cut(s)	137, 226, 259, 306, 562
Bme18I	GGWCC	2 cut(s)	439, 549
BmgT120I	GGNCC	3 cut(s)	222, 439, 549
BmiI	GGNNCC	4 cut(s)	141, 153, 399, 441
BmrFI	CCNGG	5 cut(s)	137, 226, 259, 306, 562
BmsI	GCATC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	137, 562
Bsa29I	ATCGAT	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	55
BsaJI	CCNNGG	6 cut(s)	120, 135, 143, 225, 258, 304
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	638
Bse21I	CCTNAGG	1 cut(s)	545
Bse3DI	GCAATG	2 cut(s)	407, 609
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	3 cut(s)	226, 259, 306
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	6 cut(s)	120, 135, 143, 225, 258, 304
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	2 cut(s)	407, 609
BseMII	CTCAG	2 cut(s)	453, 513
BseNI	ACTGG	1 cut(s)	638
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	118, 694
BseYI	CCCAGC	2 cut(s)	239, 509
BsgI	GTGCAG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	148, 224, 293
BshNI	GGYRCC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	137, 149, 533, 562
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	148, 224, 293
Bsp119I	TTCGAA	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	50, 235, 397, 469, 616
BspACI	CCGC	2 cut(s)	155, 614
BspANI	GGCC	3 cut(s)	148, 224, 293
BspCNI	CTCAG	2 cut(s)	454, 514
BspDI	ATCGAT	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	141, 153, 399, 441
BspPI	GGATC	4 cut(s)	230, 392, 405, 624
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	407, 609
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	6 cut(s)	120, 135, 143, 225, 258, 304
BssMI	GATC	5 cut(s)	50, 235, 397, 469, 616
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	3 cut(s)	226, 259, 306
Bst4CI	ACNGT	2 cut(s)	581, 726
BstAPI	GCANNNNNTGC	2 cut(s)	38, 131
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	291, 573
BstDEI	CTNAG	4 cut(s)	462, 522, 545, 747
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	5 cut(s)	53, 238, 400, 472, 619
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	5 cut(s)	50, 235, 397, 469, 616
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 131, 154, 163, 230
BstNI	CCWGG	3 cut(s)	226, 259, 306
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	135, 224, 257, 304, 560
BstV1I	GCAGC	2 cut(s)	118, 694
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	148, 224, 293
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	291, 573
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	687
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	222, 439, 549
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	1 cut(s)	68
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	4 cut(s)	462, 522, 545, 747
DpnI	GATC	5 cut(s)	52, 237, 399, 471, 618
DpnII	GATC	5 cut(s)	50, 235, 397, 469, 616
DraIII	CACNNNGTG	1 cut(s)	108
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	439, 549
Eco52I	CGGCCG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	224, 257, 304
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	71
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	67
FauNDI	CATATG	2 cut(s)	381, 451
Fnu4HI	GCNGC	3 cut(s)	132, 155, 683
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	132, 155, 683
FspBI	CTAG	2 cut(s)	24, 566
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	3 cut(s)	132, 155, 683
GsaI	CCCAGC	2 cut(s)	243, 513
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	3 cut(s)	148, 224, 293
HapII	CCGG	4 cut(s)	137, 149, 533, 562
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	254, 526, 655
HpaII	CCGG	4 cut(s)	137, 149, 533, 562
Hpy166II	GTNNAC	2 cut(s)	459, 722
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	3 cut(s)	329, 473, 701
Hpy8I	GTNNAC	2 cut(s)	459, 722
HpyCH4III	ACNGT	2 cut(s)	581, 726
HpyCH4V	TGCA	8 cut(s)	82, 97, 111, 412, 538, 607, 670, 742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 131, 154, 163, 230
HpyF3I	CTNAG	4 cut(s)	462, 522, 545, 747
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	685
Kzo9I	GATC	5 cut(s)	50, 235, 397, 469, 616
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	2 cut(s)	118, 694
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	2 cut(s)	24, 566
MaeIII	GTNAC	3 cut(s)	370, 620, 629
MalI	GATC	5 cut(s)	52, 237, 399, 471, 618
MboI	GATC	5 cut(s)	50, 235, 397, 469, 616
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	3 cut(s)	265, 277, 392
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	2 cut(s)	417, 683
MspI	CCGG	4 cut(s)	137, 149, 533, 562
MspR9I	CCNGG	5 cut(s)	137, 226, 259, 306, 562
MvaI	CCWGG	3 cut(s)	226, 259, 306
MwoI	GCNNNNNNNGC	5 cut(s)	38, 131, 154, 163, 230
NciI	CCSGG	2 cut(s)	137, 562
NdeI	CATATG	2 cut(s)	381, 451
NdeII	GATC	5 cut(s)	50, 235, 397, 469, 616
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	4 cut(s)	141, 153, 399, 441
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	254, 526
PkrI	GCNGC	3 cut(s)	133, 156, 684
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
Psp6I	CCWGG	3 cut(s)	224, 257, 304
PspFI	CCCAGC	2 cut(s)	239, 509
PspGI	CCWGG	3 cut(s)	224, 257, 304
PspN4I	GGNNCC	4 cut(s)	141, 153, 399, 441
PspPI	GGNCC	3 cut(s)	222, 439, 549
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
SatI	GCNGC	3 cut(s)	132, 155, 683
Sau3AI	GATC	5 cut(s)	50, 235, 397, 469, 616
Sau96I	GGNCC	3 cut(s)	222, 439, 549
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	5 cut(s)	137, 226, 259, 306, 562
SfaNI	GCATC	1 cut(s)	657
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	2 cut(s)	439, 549
Sse9I	AATT	3 cut(s)	265, 277, 392
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	155, 614
SspMI	CTAG	2 cut(s)	24, 566
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	5 cut(s)	135, 224, 257, 304, 560
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	581, 726
TaqI	TCGA	3 cut(s)	59, 88, 161
TasI	AATT	3 cut(s)	265, 277, 392
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	254, 526
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	131, 682
TspDTI	ATGAA	3 cut(s)	267, 398, 438
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	439, 549
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	2 cut(s)	24, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.