Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0024208

Physical Location & Seq

Genomic Coordinates Forward (+)

15000280 .. 15001137

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCGTGGTTTAGAGCTGGGTCTGGCGTGGCAAAGCTCGCCATTAGGAGAAGTTTATCGAATAGCGGGTCCTATGCGGCTAGGAGGCGGGTTCTTCCATCCCAAAGCCGAGACTTTCACACCACAATACCTAAATCGAAGGCTGCCCCGGTTCCACGACCTGTACCCCTCTCTAGGCTAACTGATAGTTTCTTAGATGGAACCAGCAGTGTTTATTTGGAGGGGCTTCAGAGGGCTTGGGAAGCCGACCCCAATAGCGTTGATGAGTCGTGGGACAATTTCTTTAGGAATTTTGTGGGTCAGGCCTCTACCTCGCCTGGAATTTCGGGGCAGACCATTCAAGAGAGTATGCGTCTGTTGTTGCTTGTGAGGGCATACCAGGTCAATGGTCATATGAAAGCTAAATTGGACCCTTTGGGTTTGGAAGAGAGAGAAATCCCTGATGATCTTGACCCTGCTCTATATGGGTTCACTGAGGCTGATCTTGATAGAGAGTTCTTTTTGGGGGTCTGGAGGATGGCTGGGTTTTTGTCTGAGAACCGTCCTGTGCAGACCCTTAGGTCCATATTGACCCGGCTTGAGCAGGCTTACTGTGGGACCATTGGGTATGAGTATATGCACATGATCGATCGTGAGAGATGTAACTGGTTGAGAGACAAGATTGAGACTCCTACATCAATGCAATATAATAGGCAGCGTCGTGAGGTTATTCTTGATAGGCTTATTTGGAGTACACAGTTTGAGAACTTCTTAGCCACTAAGTGGACAGCGGCAAAGAGGTTTGGGCTTGAAGGGGGAGAAACTCTTATTCCTGGCATGAAGGAGATGTTTGATAGGTCTGCTCGATCTCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

286

Amino Acids

32.6

Weight (kDa)

9.09

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	62 - 99	7.3e-15	2-oxoglutarate dehydrogenase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024208)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21781
pyrus_communis	pycom01g14970
rosa_multiflora	Rmu_co8298685.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	762
AciI	CCGC	4 cut(s)	66, 77, 88, 770
AcsI	RAATTY	2 cut(s)	289, 321
AcuI	CTGAAG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	165, 733
AfiI	CCNNNNNNNGG	2 cut(s)	174, 762
AgsI	TTSAA	2 cut(s)	341, 791
AjnI	CCWGG	3 cut(s)	316, 378, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	17, 37, 401
AluI	AGCT	3 cut(s)	17, 37, 401
Alw26I	GTCTC	3 cut(s)	105, 648, 659
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	143, 694
ApoI	RAATTY	2 cut(s)	289, 321
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspS9I	GGNCC	4 cut(s)	69, 409, 561, 597
AsuC2I	CCSGG	2 cut(s)	149, 574
AvaI	CYCGRG	1 cut(s)	849
AvaII	GGWCC	4 cut(s)	69, 409, 561, 597
AxyI	CCTNAGG	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	130, 706
BccI	CCATC	3 cut(s)	106, 191, 511
BciT130I	CCWGG	3 cut(s)	318, 380, 813
BcnI	CCSGG	2 cut(s)	149, 574
BcoDI	GTCTC	3 cut(s)	105, 648, 659
BfaI	CTAG	2 cut(s)	81, 174
BisI	GCNGC	4 cut(s)	78, 144, 695, 771
BlsI	GCNGC	4 cut(s)	79, 145, 696, 772
Bme1390I	CCNGG	5 cut(s)	149, 318, 380, 574, 813
Bme18I	GGWCC	4 cut(s)	69, 409, 561, 597
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	4 cut(s)	69, 409, 561, 597
BmiI	GGNNCC	5 cut(s)	70, 153, 202, 411, 598
BmrFI	CCNGG	5 cut(s)	149, 318, 380, 574, 813
BpmI	CTGGAG	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	149, 574
Bsa29I	ATCGAT	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 762
Bse1I	ACTGG	1 cut(s)	650
Bse21I	CCTNAGG	1 cut(s)	557
BseBI	CCWGG	3 cut(s)	318, 380, 813
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	98, 522
BseLI	CCNNNNNNNGG	2 cut(s)	174, 762
BseMII	CTCAG	2 cut(s)	465, 525
BseNI	ACTGG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	130, 706
BseYI	CCCAGC	2 cut(s)	17, 521
BsgI	GTGCAG	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	2 cut(s)	149, 574
BslFI	GGGAC	2 cut(s)	287, 610
BslI	CCNNNNNNNGG	2 cut(s)	174, 762
BsmAI	GTCTC	3 cut(s)	105, 648, 659
BsmFI	GGGAC	2 cut(s)	287, 610
BsnI	GGCC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	849
Bsp143I	GATC	5 cut(s)	445, 481, 624, 628, 845
BspACI	CCGC	4 cut(s)	66, 77, 88, 770
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	466, 526
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	5 cut(s)	70, 153, 202, 411, 598
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	445, 481, 624, 628, 845
Bst2UI	CCWGG	3 cut(s)	318, 380, 813
Bst4CI	ACNGT	3 cut(s)	542, 593, 738
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	39, 585
BstDEI	CTNAG	6 cut(s)	193, 474, 534, 557, 751, 759
BstF5I	GGATG	2 cut(s)	98, 522
BstKTI	GATC	5 cut(s)	448, 484, 627, 631, 848
BstMAI	GTCTC	3 cut(s)	105, 648, 659
BstMBI	GATC	5 cut(s)	445, 481, 624, 628, 845
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 242
BstNI	CCWGG	3 cut(s)	318, 380, 813
BstSCI	CCNGG	5 cut(s)	147, 316, 378, 572, 811
BstV1I	GCAGC	2 cut(s)	130, 706
BstXI	CCANNNNNNTGG	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	305
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	98, 522
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	214, 471
Cac8I	GCNNGC	2 cut(s)	39, 585
Cfr13I	GGNCC	4 cut(s)	69, 409, 561, 597
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	2 cut(s)	341, 686
CsiI	ACCWGGT	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	164, 732
CviAII	CATG	2 cut(s)	622, 817
CviQI	GTAC	2 cut(s)	164, 732
DdeI	CTNAG	6 cut(s)	193, 474, 534, 557, 751, 759
DpnI	GATC	5 cut(s)	447, 483, 626, 630, 847
DpnII	GATC	5 cut(s)	445, 481, 624, 628, 845
DraIII	CACNNNGTG	1 cut(s)	762
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	4 cut(s)	69, 409, 561, 597
Eco57I	CTGAAG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	849
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	316, 378, 811
FaeI	CATG	2 cut(s)	625, 820
FaqI	GGGAC	2 cut(s)	287, 610
FatI	CATG	2 cut(s)	621, 816
FauI	CCCGC	2 cut(s)	59, 81
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	78, 144, 695, 771
FokI	GGATG	2 cut(s)	85, 529
Fsp4HI	GCNGC	4 cut(s)	78, 144, 695, 771
FspBI	CTAG	2 cut(s)	81, 174
GluI	GCNGC	4 cut(s)	78, 144, 695, 771
GsaI	CCCAGC	2 cut(s)	21, 525
GsuI	CTGGAG	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	149, 574
HgaI	GACGC	2 cut(s)	341, 686
Hin1II	CATG	2 cut(s)	625, 820
HinfI	GANTC	2 cut(s)	266, 667
HpaII	CCGG	2 cut(s)	149, 574
Hpy166II	GTNNAC	3 cut(s)	471, 734, 765
Hpy188I	TCNGA	2 cut(s)	231, 535
Hpy188III	TCNNGA	7 cut(s)	341, 449, 485, 511, 632, 701, 713
Hpy8I	GTNNAC	3 cut(s)	471, 734, 765
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	3 cut(s)	133, 785, 814
HpyCH4III	ACNGT	3 cut(s)	542, 593, 738
HpyCH4V	TGCA	3 cut(s)	550, 619, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 242
HpyF3I	CTNAG	6 cut(s)	193, 474, 534, 557, 751, 759
Hsp92II	CATG	2 cut(s)	625, 820
Kzo9I	GATC	5 cut(s)	445, 481, 624, 628, 845
Lsp1109I	GCAGC	2 cut(s)	130, 706
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	2 cut(s)	81, 174
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	5 cut(s)	447, 483, 626, 630, 847
MboI	GATC	5 cut(s)	445, 481, 624, 628, 845
MboII	GAAGA	2 cut(s)	86, 437
MluCI	AATT	4 cut(s)	277, 289, 321, 404
MlyI	GAGTC	2 cut(s)	275, 661
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	2 cut(s)	149, 574
MspR9I	CCNGG	5 cut(s)	149, 318, 380, 574, 813
MvaI	CCWGG	3 cut(s)	318, 380, 813
MwoI	GCNNNNNNNGC	2 cut(s)	38, 242
NciI	CCSGG	2 cut(s)	149, 574
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	445, 481, 624, 628, 845
NlaIII	CATG	2 cut(s)	625, 820
NlaIV	GGNNCC	5 cut(s)	70, 153, 202, 411, 598
NmeAIII	GCCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	762
PkrI	GCNGC	4 cut(s)	79, 145, 696, 772
Ple19I	CGATCG	1 cut(s)	631
PleI	GAGTC	2 cut(s)	274, 661
PpsI	GAGTC	2 cut(s)	274, 661
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	316, 378, 811
PspFI	CCCAGC	2 cut(s)	17, 521
PspGI	CCWGG	3 cut(s)	316, 378, 811
PspN4I	GGNNCC	5 cut(s)	70, 153, 202, 411, 598
PspPI	GGNCC	4 cut(s)	69, 409, 561, 597
PspPPI	RGGWCCY	1 cut(s)	69
PvuI	CGATCG	1 cut(s)	631
RsaI	GTAC	2 cut(s)	165, 733
RsaNI	GTAC	2 cut(s)	164, 732
SatI	GCNGC	4 cut(s)	78, 144, 695, 771
Sau3AI	GATC	5 cut(s)	445, 481, 624, 628, 845
Sau96I	GGNCC	4 cut(s)	69, 409, 561, 597
SchI	GAGTC	2 cut(s)	275, 661
ScrFI	CCNGG	5 cut(s)	149, 318, 380, 574, 813
SexAI	ACCWGGT	1 cut(s)	378
SinI	GGWCC	4 cut(s)	69, 409, 561, 597
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	4 cut(s)	277, 289, 321, 404
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	4 cut(s)	66, 77, 88, 770
SspMI	CTAG	2 cut(s)	81, 174
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	5 cut(s)	147, 316, 378, 572, 811
TaaI	ACNGT	3 cut(s)	542, 593, 738
TaqI	TCGA	4 cut(s)	59, 137, 627, 844
TasI	AATT	4 cut(s)	277, 289, 321, 404
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	2 cut(s)	80, 773
TscAI	CASTG	2 cut(s)	214, 478
TseI	GCWGC	2 cut(s)	143, 694
TspDTI	ATGAA	2 cut(s)	410, 833
TspRI	CASTG	2 cut(s)	214, 478
Van91I	CCANNNNNTGG	1 cut(s)	762
VpaK11BI	GGWCC	4 cut(s)	69, 409, 561, 597
XapI	RAATTY	2 cut(s)	289, 321
XspI	CTAG	2 cut(s)	81, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.