FvH4_7g24350

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015003
Physical Location & Seq
Reverse (-)
18809139 .. 18811090
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24350.t1

Sequence Viewer

Length: 825 bp
ATGGCCACCACCACAGCTGCCGTCACTTCACATTTCTTTGGAGCTCAACTCCAAAACCCTAGCCCTAGCTTTGGAAAGTTCCAGGCTCTCTTTAGCTTCGGCAAGAAGTCACCGCCACCACCGCCAAAGAAGGCTCCCAAGAAGCCGGATACCGACCGGCTCGTGTGGTTCCCCGGCGCGCAACCGCCCGAATGGCTCGACGGTTCGTACGTCGGGGACCGCGGGTTTGATCCATTGGGGTTAGGGAAGCCGGTGGAGTACTTGCAGTATGACTACGACGGGTTGGACCAGAACCTGGCCAAGAACTTGGCTGGTGATGTGATCGGGACCAGGATCGAAGCTTCTGATCTCAACCCGACTCCGTTGCAGCCGTACACGGAGGTTTTTGGGCTGCAGAGGTTCAGAGAGTGCGAGCTGATTCATGGGAGGTGGGCAATGCTGGGAGCTCTTGGGGCTCTTGCTGTTGAGGGTCTCACCGGTGTTGCATGGCAAGACGCCGGAAAGGTTGAACTGGTTGAAGGATCATCCTACCTCGGCCTTCCACTTCCATTTTCCATTTCGACCTTGATATGGATCGAGGTGCTGGTTCTAGGGTACATCGAGTTCCAAAGGAATGCAGAACTCGACCCCGAGATGAGGCTATACCCCGGCGGCAAGTTCTTTGATCCGTTGGGTTTGGCCGCCGATCCGGAAGAGAAGGAAAGACTTCAACTGGCTGAGATCAAGCATGCTCGTCTGGCTATGGTAGTTTTCCTGATTTTTGGTATTCAAGCTGCTGTGACAGGAAAAGGACCCATCGCTTTTATAGCTACCTTTAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

275

Amino Acids

29.98

Weight (kDa)

5.21

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 62 - 258 3e-38 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40100
fragaria_vesca FvH4_7g24350
malus_domestica MD01G1132800.v1.1
prunus_persica Prupe.2G248900_v2.0.a1
pyrus_communis pycom01g16940
rosa_chinensis RchiOBHm_Chr1g0370011
rosa_laevigata RLG00000027078
rosa_multiflora Rmu_sc0005056.1_g000015
rosa_roxburghii Rroxscaffold_4G00286870 Rroxscaffold_4G00287160
rosa_rugosa Rorug01G0353400
rosa_samantha Rh1AG362100 Rh1BG325300 Rh1CG338600 Rh1DG355800
rosa_wichuraiana Rw1G031860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 295
AccII CGCG 2 cut(s) 179, 222
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 7 cut(s) 113, 122, 185, 220, 222, 651, 681
AclWI GGATC 6 cut(s) 224, 341, 529, 581, 659, 680
AcoI YGGCCR 3 cut(s) 3, 297, 678
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 4 cut(s) 209, 260, 374, 596
AfiI CCNNNNNNNGG 4 cut(s) 71, 295, 570, 636
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 4 cut(s) 509, 518, 710, 770
AjnI CCWGG 3 cut(s) 81, 294, 329
AluBI AGCT 9 cut(s) 17, 44, 69, 96, 341, 415, 446, 773, 809
AluI AGCT 9 cut(s) 17, 44, 69, 96, 341, 415, 446, 773, 809
Alw21I GWGCWC 2 cut(s) 46, 448
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 6 cut(s) 224, 341, 529, 581, 659, 680
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 4 cut(s) 3, 297, 535, 678
ApeKI GCWGC 4 cut(s) 17, 367, 391, 773
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsiGI ACCGGT 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 2 cut(s) 179, 181
AspS9I GGNCC 4 cut(s) 217, 286, 327, 791
AsuC2I CCSGG 2 cut(s) 174, 648
AsuHPI GGTGA 3 cut(s) 102, 326, 466
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 4 cut(s) 217, 286, 327, 791
BalI TGGCCA 2 cut(s) 5, 299
BanII GRGCYC 3 cut(s) 46, 448, 457
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 46, 448
BbvI GCAGC 4 cut(s) 4, 378, 379, 760
BccI CCATC 1 cut(s) 803
BceAI ACGGC 2 cut(s) 5, 355
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 3 cut(s) 83, 296, 331
BciVI GTATCC 1 cut(s) 142
BcnI CCSGG 2 cut(s) 174, 648
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 3 cut(s) 60, 66, 590
BfmI CTRYAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 193
BisI GCNGC 6 cut(s) 18, 368, 392, 652, 681, 774
BlsI GCNGC 6 cut(s) 19, 369, 393, 653, 682, 775
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 5 cut(s) 83, 174, 296, 331, 648
Bme18I GGWCC 4 cut(s) 217, 286, 327, 791
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 4 cut(s) 217, 286, 327, 791
BmiI GGNNCC 5 cut(s) 135, 170, 218, 328, 793
BmrFI CCNGG 5 cut(s) 83, 174, 296, 331, 648
BplI GAGNNNNNCTC 2 cut(s) 33, 65
BpuMI CCSGG 2 cut(s) 174, 648
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 4 cut(s) 172, 220, 532, 646
BsaWI WCCGGW 2 cut(s) 476, 688
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 295, 570, 636
Bse118I RCCGGY 3 cut(s) 156, 250, 476
Bse1I ACTGG 2 cut(s) 516, 717
Bse3DI GCAATG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 572
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 3 cut(s) 83, 296, 331
BseDI CCNNGG 4 cut(s) 172, 220, 532, 646
BseGI GGATG 1 cut(s) 524
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 4 cut(s) 71, 295, 570, 636
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 2 cut(s) 516, 717
BsePI GCGCGC 1 cut(s) 177
BseXI GCAGC 4 cut(s) 4, 378, 379, 760
BseYI CCCAGC 1 cut(s) 439
Bsh1236I CGCG 2 cut(s) 179, 222
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 5, 299, 537, 680
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 2 cut(s) 46, 448
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 8 cut(s) 146, 157, 174, 251, 477, 498, 648, 689
BsiWI CGTACG 1 cut(s) 207
BslFI GGGAC 2 cut(s) 230, 340
BslI CCNNNNNNNGG 4 cut(s) 71, 295, 570, 636
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 230, 340
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 4 cut(s) 5, 299, 537, 680
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 46, 448, 457
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
BspACI CCGC 7 cut(s) 113, 122, 185, 220, 222, 651, 681
BspANI GGCC 4 cut(s) 5, 299, 537, 680
BspCNI CTCAG 1 cut(s) 709
BspEI TCCGGA 1 cut(s) 688
BspFNI CGCG 2 cut(s) 179, 222
BspLI GGNNCC 5 cut(s) 135, 170, 218, 328, 793
BspMAI CTGCAG 1 cut(s) 396
BspPI GGATC 6 cut(s) 224, 341, 529, 581, 659, 680
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 3 cut(s) 156, 250, 476
BsrI ACTGG 2 cut(s) 516, 717
BssAI RCCGGY 3 cut(s) 156, 250, 476
BssECI CCNNGG 4 cut(s) 172, 220, 532, 646
BssHII GCGCGC 1 cut(s) 177
BssMI GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 3 cut(s) 83, 296, 331
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 687
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 179, 413, 729
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 2 cut(s) 179, 222
BstHHI GCGC 2 cut(s) 179, 181
BstKTI GATC 9 cut(s) 232, 324, 336, 349, 524, 576, 667, 688, 723
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 121, 193, 452, 737, 806
BstNI CCWGG 3 cut(s) 83, 296, 331
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 5 cut(s) 81, 172, 294, 329, 646
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 2 cut(s) 179, 222
BstV1I GCAGC 4 cut(s) 4, 378, 379, 760
BstXI CCANNNNNNTGG 1 cut(s) 307
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 4 cut(s) 5, 299, 537, 680
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 781
BtsCI GGATG 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 179, 413, 729
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 2 cut(s) 179, 181
Cfr10I RCCGGY 3 cut(s) 156, 250, 476
Cfr13I GGNCC 4 cut(s) 217, 286, 327, 791
Cfr42I CCGCGG 1 cut(s) 223
CseI GACGC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 208, 259, 373, 595
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 3 cut(s) 422, 486, 728
CviQI GTAC 4 cut(s) 208, 259, 373, 595
DdeI CTNAG 1 cut(s) 717
DpnI GATC 9 cut(s) 231, 323, 335, 348, 523, 575, 666, 687, 722
DpnII GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
EaeI YGGCCR 3 cut(s) 3, 297, 678
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Ecl136II GAGCTC 2 cut(s) 44, 446
Eco24I GRGCYC 3 cut(s) 46, 448, 457
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 4 cut(s) 217, 286, 327, 791
Eco53kI GAGCTC 2 cut(s) 44, 446
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 2 cut(s) 44, 446
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 3 cut(s) 81, 294, 329
EcoT38I GRGCYC 3 cut(s) 46, 448, 457
FaeI CATG 3 cut(s) 425, 489, 731
FaiI YATR 8 cut(s) 270, 423, 487, 571, 643, 729, 743, 806
FaqI GGGAC 2 cut(s) 230, 340
FatI CATG 3 cut(s) 421, 485, 727
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 6 cut(s) 18, 368, 392, 652, 681, 774
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 3 cut(s) 46, 448, 457
Fsp4HI GCNGC 6 cut(s) 18, 368, 392, 652, 681, 774
FspBI CTAG 3 cut(s) 60, 66, 590
GlaI GCGC 2 cut(s) 178, 180
GluI GCNGC 6 cut(s) 18, 368, 392, 652, 681, 774
GsaI CCCAGC 1 cut(s) 443
HaeIII GGCC 4 cut(s) 5, 299, 537, 680
HapII CCGG 8 cut(s) 146, 157, 174, 251, 477, 498, 648, 689
HgaI GACGC 1 cut(s) 503
HhaI GCGC 2 cut(s) 179, 181
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 425, 489, 731
Hin6I GCGC 2 cut(s) 177, 179
HinP1I GCGC 2 cut(s) 177, 179
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 2 cut(s) 358, 418
HpaII CCGG 8 cut(s) 146, 157, 174, 251, 477, 498, 648, 689
HphI GGTGA 3 cut(s) 102, 326, 466
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 346, 404
Hpy188III TCNNGA 3 cut(s) 325, 689, 754
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 3 cut(s) 203, 215, 281
HpyAV CCTTC 4 cut(s) 124, 512, 548, 691
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 265, 367, 394, 485, 617
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 193, 452, 737, 806
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 425, 489, 731
HspAI GCGC 2 cut(s) 177, 179
Kpn2I TCCGGA 1 cut(s) 688
KspI CCGCGG 1 cut(s) 223
Kzo9I GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
LmnI GCTCC 3 cut(s) 41, 139, 443
Lsp1109I GCAGC 4 cut(s) 4, 378, 379, 760
MaeI CTAG 3 cut(s) 60, 66, 590
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 22, 108, 778
MalI GATC 9 cut(s) 231, 323, 335, 348, 523, 575, 666, 687, 722
MboI GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
MboII GAAGA 1 cut(s) 704
MhlI GDGCHC 3 cut(s) 46, 448, 457
MlsI TGGCCA 2 cut(s) 5, 299
MluNI TGGCCA 2 cut(s) 5, 299
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 7 cut(s) 373, 390, 420, 460, 542, 571, 630
Mox20I TGGCCA 2 cut(s) 5, 299
MroI TCCGGA 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 705
MscI TGGCCA 2 cut(s) 5, 299
MseI TTAA 1 cut(s) 816
Msp20I TGGCCA 2 cut(s) 5, 299
MspA1I CMGCKG 2 cut(s) 17, 222
MspI CCGG 8 cut(s) 146, 157, 174, 251, 477, 498, 648, 689
MspR9I CCNGG 5 cut(s) 83, 174, 296, 331, 648
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 3 cut(s) 83, 296, 331
MvnI CGCG 2 cut(s) 179, 222
MwoI GCNNNNNNNGC 5 cut(s) 121, 193, 452, 737, 806
NciI CCSGG 2 cut(s) 174, 648
NdeII GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
NlaIII CATG 3 cut(s) 425, 489, 731
NlaIV GGNNCC 5 cut(s) 135, 170, 218, 328, 793
NmeAIII GCCGAG 1 cut(s) 513
NmuCI GTSAC 3 cut(s) 22, 108, 778
NspI RCATGY 1 cut(s) 731
PaeI GCATGC 1 cut(s) 731
PauI GCGCGC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 418
Pfl23II CGTACG 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 295
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 6 cut(s) 19, 369, 393, 653, 682, 775
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 791
Psp124BI GAGCTC 2 cut(s) 46, 448
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 81, 294, 329
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 3 cut(s) 81, 294, 329
PspLI CGTACG 1 cut(s) 207
PspN4I GGNNCC 5 cut(s) 135, 170, 218, 328, 793
PspPI GGNCC 4 cut(s) 217, 286, 327, 791
PspPPI RGGWCCY 1 cut(s) 791
PsrI GAACNNNNNNTAC 2 cut(s) 587, 619
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 295
PteI GCGCGC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 4 cut(s) 209, 260, 374, 596
RsaNI GTAC 4 cut(s) 208, 259, 373, 595
SacI GAGCTC 2 cut(s) 46, 448
SacII CCGCGG 1 cut(s) 223
SaqAI TTAA 1 cut(s) 816
SatI GCNGC 6 cut(s) 18, 368, 392, 652, 681, 774
Sau3AI GATC 9 cut(s) 229, 321, 333, 346, 521, 573, 664, 685, 720
Sau96I GGNCC 4 cut(s) 217, 286, 327, 791
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 5 cut(s) 83, 174, 296, 331, 648
SduI GDGCHC 3 cut(s) 46, 448, 457
SfcI CTRYAG 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 223
SinI GGWCC 4 cut(s) 217, 286, 327, 791
SphI GCATGC 1 cut(s) 731
SsiI CCGC 7 cut(s) 113, 122, 185, 220, 222, 651, 681
SspMI CTAG 3 cut(s) 60, 66, 590
SstI GAGCTC 2 cut(s) 46, 448
StyD4I CCNGG 5 cut(s) 81, 172, 294, 329, 646
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 213
TaqI TCGA 6 cut(s) 198, 336, 560, 576, 600, 624
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 654, 683
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 816
Tru9I TTAA 1 cut(s) 816
TseFI GTSAC 3 cut(s) 22, 108, 778
TseI GCWGC 4 cut(s) 17, 367, 391, 773
Tsp45I GTSAC 3 cut(s) 22, 108, 778
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 3 cut(s) 351, 392, 657
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 4 cut(s) 217, 286, 327, 791
XceI RCATGY 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 3 cut(s) 60, 66, 590
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.