Prupe.2G248900_v2.0.a1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015003
Physical Location & Seq
Reverse (-)
26441288 .. 26443733
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G248900.1

Sequence Viewer

Length: 849 bp
ATGGCCACCACCACAGCCGCTGTCACTACCTACTTCTTCGGAGCCCGCCTCCCAAACCCCGGACCCAGTTTCGGGAGATTCCAAGCCCGATTCGGAAACTTCGGCGGCTTCAGCTTAGGCACCAAGAAGTCACCGCCACCTCCACCACCAAAACAAAAGCAGAAATTTGACGACGGGGAACGACCCGTATGGTTCCCGGGTGCCGAACCGCCCGAGTGGCTCGACGGGTCGCTGGTCGGGGACCGGGGGTTCGATCCGTTCGGGCTCGGGAAGCCCGCGGAGTACTTGCAGTTCGATTACGACGGGCTGGACCAGAACTTGGCGAAGAATGTGGCGGGTGATGTGATCGGGACCCGGATCGAGACGGCAGAGGTGAATCCGACGCCGTTTCAGCCGTACTCGGAGGTGTTTGGGCTGCAGAGGTTCCGAGAGTGCGAGCTGATTCATGGGAGATGGGCGATGTTGGGTGCGCTTGGCGCTCTTGCTGTCGAGGGCCTCACTGGGGTTGCATGGCAGGACGCTGGCAAGGTTGAACTGATTGAAGGATCATCATACCTTGGGCTTCCCCTTCCCTTTTCCATAACCACTTTGATTTGGATCGAAGTGTTGGTGATTGGGTACATTGAGTTCCAGAGGAATGCTGAGCTGGACCCAGAGAAAAGGCTGTACCCGGGTGGCAAGTTCTTTGACCCACTGGGCCTGGCCTCTGACCCGGAAGAGAAGGAGAGGCTTCAATTGGCTGAGATCAAGCATGCCCGTCTTGCCATGGTGGTCTTCCTCATTTTTGGCATCCAAGCTGCTGTGACAGGGAAGGGCCCTGTCAGTTTTGTGGCAACCTTTAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

283

Amino Acids

30.87

Weight (kDa)

5.15

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40100
fragaria_vesca FvH4_7g24350
malus_domestica MD01G1132800.v1.1
prunus_persica Prupe.2G248900_v2.0.a1
pyrus_communis pycom01g16940
rosa_chinensis RchiOBHm_Chr1g0370011
rosa_laevigata RLG00000027078
rosa_multiflora Rmu_sc0005056.1_g000015
rosa_roxburghii Rroxscaffold_4G00286870 Rroxscaffold_4G00287160
rosa_rugosa Rorug01G0353400
rosa_samantha Rh1AG362100 Rh1BG325300 Rh1CG338600 Rh1DG355800
rosa_wichuraiana Rw1G031860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 119, 200
AccB7I CCANNNNNTGG 1 cut(s) 319
AccII CGCG 1 cut(s) 278
AciI CCGC 8 cut(s) 18, 46, 105, 134, 209, 276, 278, 335
AclWI GGATC 4 cut(s) 248, 365, 553, 605
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 4 cut(s) 284, 398, 620, 668
AfiI CCNNNNNNNGG 5 cut(s) 59, 71, 72, 319, 502
AgsI TTSAA 3 cut(s) 533, 542, 734
AjnI CCWGG 1 cut(s) 699
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 114, 439, 646, 797
AluI AGCT 4 cut(s) 114, 439, 646, 797
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 4 cut(s) 248, 365, 553, 605
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 4 cut(s) 196, 212, 266, 670
AoxI GGCC 5 cut(s) 3, 493, 697, 702, 814
ApaI GGGCCC 1 cut(s) 818
ApeKI GCWGC 2 cut(s) 415, 797
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 2 cut(s) 472, 479
AspS9I GGNCC 9 cut(s) 62, 241, 310, 351, 493, 649, 697, 814, 815
AsuC2I CCSGG 8 cut(s) 60, 197, 198, 245, 355, 671, 672, 713
AsuHPI GGTGA 4 cut(s) 123, 350, 385, 622
AvaI CYCGRG 4 cut(s) 196, 212, 266, 670
AvaII GGWCC 5 cut(s) 62, 241, 310, 351, 649
BaeGI GKGCMC 1 cut(s) 818
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 119, 200
BanII GRGCYC 3 cut(s) 46, 267, 818
BbsI GAAGAC 1 cut(s) 766
BbvI GCAGC 2 cut(s) 402, 784
BccI CCATC 1 cut(s) 447
BceAI ACGGC 3 cut(s) 370, 379, 381
BciT130I CCWGG 1 cut(s) 701
BcnI CCSGG 8 cut(s) 60, 197, 198, 245, 355, 671, 672, 713
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 416
BfoI RGCGCY 1 cut(s) 480
BglI GCCNNNNNGGC 1 cut(s) 217
BisI GCNGC 4 cut(s) 18, 106, 416, 798
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 4 cut(s) 19, 107, 417, 799
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 9 cut(s) 60, 197, 198, 245, 355, 671, 672, 701, 713
Bme18I GGWCC 5 cut(s) 62, 241, 310, 351, 649
BmeT110I CYCGRG 4 cut(s) 196, 212, 266, 670
BmgT120I GGNCC 9 cut(s) 62, 241, 310, 351, 493, 649, 697, 814, 815
BmrFI CCNGG 9 cut(s) 60, 197, 198, 245, 355, 671, 672, 701, 713
BmrI ACTGGG 3 cut(s) 60, 510, 704
BmsI GCATC 1 cut(s) 798
BmuI ACTGGG 3 cut(s) 60, 510, 704
BpiI GAAGAC 1 cut(s) 766
BplI GAGNNNNNCTC 2 cut(s) 33, 65
Bpu10I CCTNAGC 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 642
BpuMI CCSGG 8 cut(s) 60, 197, 198, 245, 355, 671, 672, 713
BsaBI GATNNNNATC 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 7 cut(s) 58, 196, 244, 276, 556, 670, 765
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 71, 72, 319, 502
Bse1I ACTGG 3 cut(s) 66, 505, 699
Bse8I GATNNNNATC 1 cut(s) 596
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 7 cut(s) 58, 196, 244, 276, 556, 670, 765
BseGI GGATG 1 cut(s) 789
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 5 cut(s) 59, 71, 72, 319, 502
BseMII CTCAG 2 cut(s) 633, 732
BseNI ACTGG 3 cut(s) 66, 505, 699
BseSI GKGCMC 1 cut(s) 818
BseXI GCAGC 2 cut(s) 402, 784
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 5 cut(s) 5, 495, 699, 704, 816
BshNI GGYRCC 2 cut(s) 119, 200
BsiHKCI CYCGRG 4 cut(s) 196, 212, 266, 670
BsiSI CCGG 6 cut(s) 60, 197, 244, 355, 671, 713
BslFI GGGAC 2 cut(s) 254, 364
BslI CCNNNNNNNGG 5 cut(s) 59, 71, 72, 319, 502
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 2 cut(s) 254, 364
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 5 cut(s) 5, 495, 699, 704, 816
BsoBI CYCGRG 4 cut(s) 196, 212, 266, 670
Bsp120I GGGCCC 1 cut(s) 814
Bsp1286I GDGCHC 3 cut(s) 46, 267, 818
Bsp143I GATC 6 cut(s) 253, 345, 357, 545, 597, 744
Bsp1720I GCTNAGC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 8 cut(s) 18, 46, 105, 134, 209, 276, 278, 335
BspANI GGCC 5 cut(s) 5, 495, 699, 704, 816
BspCNI CTCAG 2 cut(s) 634, 733
BspFNI CGCG 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 4 cut(s) 248, 365, 553, 605
BspT107I GGYRCC 2 cut(s) 119, 200
BsrI ACTGG 3 cut(s) 66, 505, 699
BssECI CCNNGG 7 cut(s) 58, 196, 244, 276, 556, 670, 765
BssMI GATC 6 cut(s) 253, 345, 357, 545, 597, 744
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 2 cut(s) 556, 765
Bst2UI CCWGG 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 46, 276, 437, 523, 753
BstDEI CTNAG 3 cut(s) 115, 642, 741
BstDSI CCRYGG 2 cut(s) 276, 765
BstF5I GGATG 1 cut(s) 789
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 2 cut(s) 472, 479
BstKTI GATC 6 cut(s) 256, 348, 360, 548, 600, 747
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 6 cut(s) 253, 345, 357, 545, 597, 744
BstMWI GCNNNNNNNGC 6 cut(s) 111, 217, 271, 391, 476, 761
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 9 cut(s) 58, 195, 196, 243, 353, 669, 670, 699, 711
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 818
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 402, 784
BstV2I GAAGAC 1 cut(s) 766
BsuRI GGCC 5 cut(s) 5, 495, 699, 704, 816
BtgI CCRYGG 2 cut(s) 276, 765
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 498, 692
Cac8I GCNNGC 5 cut(s) 46, 276, 437, 523, 753
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 2 cut(s) 472, 479
Cfr13I GGNCC 9 cut(s) 62, 241, 310, 351, 493, 649, 697, 814, 815
Cfr42I CCGCGG 1 cut(s) 279
Cfr9I CCCGGG 2 cut(s) 196, 670
CseI GACGC 2 cut(s) 391, 527
Csp6I GTAC 4 cut(s) 283, 397, 619, 667
CviAII CATG 4 cut(s) 446, 510, 752, 766
CviQI GTAC 4 cut(s) 283, 397, 619, 667
DdeI CTNAG 3 cut(s) 115, 642, 741
DpnI GATC 6 cut(s) 255, 347, 359, 547, 599, 746
DpnII GATC 6 cut(s) 253, 345, 357, 545, 597, 744
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 556, 765
Eco24I GRGCYC 3 cut(s) 46, 267, 818
Eco47I GGWCC 5 cut(s) 62, 241, 310, 351, 649
Eco57I CTGAAG 1 cut(s) 94
Eco88I CYCGRG 4 cut(s) 196, 212, 266, 670
EcoO109I RGGNCCY 4 cut(s) 351, 493, 814, 815
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 556, 765
EcoT38I GRGCYC 3 cut(s) 46, 267, 818
ErhI CCWWGG 2 cut(s) 556, 765
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 4 cut(s) 449, 513, 755, 769
FaiI YATR 7 cut(s) 190, 447, 511, 553, 581, 753, 767
FaqI GGGAC 2 cut(s) 254, 364
FatI CATG 4 cut(s) 445, 509, 751, 765
FauI CCCGC 3 cut(s) 53, 283, 328
Fnu4HI GCNGC 4 cut(s) 18, 106, 416, 798
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 3 cut(s) 46, 267, 818
Fsp4HI GCNGC 4 cut(s) 18, 106, 416, 798
GlaI GCGC 2 cut(s) 471, 478
GluI GCNGC 4 cut(s) 18, 106, 416, 798
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 5 cut(s) 5, 495, 699, 704, 816
HapII CCGG 6 cut(s) 60, 197, 244, 355, 671, 713
HgaI GACGC 2 cut(s) 391, 527
HhaI GCGC 2 cut(s) 472, 479
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 4 cut(s) 449, 513, 755, 769
Hin6I GCGC 2 cut(s) 470, 477
HinP1I GCGC 2 cut(s) 470, 477
HinfI GANTC 4 cut(s) 78, 90, 376, 442
HpaII CCGG 6 cut(s) 60, 197, 244, 355, 671, 713
HphI GGTGA 4 cut(s) 123, 350, 385, 622
Hpy188I TCNGA 6 cut(s) 41, 95, 381, 403, 428, 709
Hpy188III TCNNGA 5 cut(s) 73, 268, 349, 361, 631
Hpy99I CGWCG 4 cut(s) 176, 227, 305, 385
HpyAV CCTTC 4 cut(s) 536, 578, 715, 805
HpyCH4V TGCA 3 cut(s) 289, 418, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 217, 271, 391, 476, 761
HpyF3I CTNAG 3 cut(s) 115, 642, 741
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 4 cut(s) 449, 513, 755, 769
HspAI GCGC 2 cut(s) 470, 477
KflI GGGWCCC 1 cut(s) 351
KspI CCGCGG 1 cut(s) 279
Kzo9I GATC 6 cut(s) 253, 345, 357, 545, 597, 744
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 402, 784
LweI GCATC 1 cut(s) 798
MaeIII GTNAC 3 cut(s) 22, 129, 802
MalI GATC 6 cut(s) 255, 347, 359, 547, 599, 746
MboI GATC 6 cut(s) 253, 345, 357, 545, 597, 744
MboII GAAGA 4 cut(s) 28, 337, 728, 766
MfeI CAATTG 1 cut(s) 734
MhlI GDGCHC 3 cut(s) 46, 267, 818
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 164, 734
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 20, 278
MspI CCGG 6 cut(s) 60, 197, 244, 355, 671, 713
MspR9I CCNGG 9 cut(s) 60, 197, 198, 245, 355, 671, 672, 701, 713
MunI CAATTG 1 cut(s) 734
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 111, 217, 271, 391, 476, 761
NciI CCSGG 8 cut(s) 60, 197, 198, 245, 355, 671, 672, 713
NcoI CCATGG 1 cut(s) 765
NdeII GATC 6 cut(s) 253, 345, 357, 545, 597, 744
NlaIII CATG 4 cut(s) 449, 513, 755, 769
NmuCI GTSAC 3 cut(s) 22, 129, 802
NspI RCATGY 1 cut(s) 755
PaeI GCATGC 1 cut(s) 755
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 4 cut(s) 78, 90, 376, 442
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 4 cut(s) 19, 107, 417, 799
PpuMI RGGWCCY 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspOMI GGGCCC 1 cut(s) 814
PspPI GGNCC 9 cut(s) 62, 241, 310, 351, 493, 649, 697, 814, 815
PspPPI RGGWCCY 1 cut(s) 351
PsrI GAACNNNNNNTAC 4 cut(s) 275, 307, 611, 643
PstI CTGCAG 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 4 cut(s) 284, 398, 620, 668
RsaNI GTAC 4 cut(s) 283, 397, 619, 667
SacII CCGCGG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 840
SatI GCNGC 4 cut(s) 18, 106, 416, 798
Sau3AI GATC 6 cut(s) 253, 345, 357, 545, 597, 744
Sau96I GGNCC 9 cut(s) 62, 241, 310, 351, 493, 649, 697, 814, 815
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 9 cut(s) 60, 197, 198, 245, 355, 671, 672, 701, 713
SduI GDGCHC 3 cut(s) 46, 267, 818
SfaNI GCATC 1 cut(s) 798
SfcI CTRYAG 1 cut(s) 416
Sfr303I CCGCGG 1 cut(s) 279
SgrBI CCGCGG 1 cut(s) 279
SinI GGWCC 5 cut(s) 62, 241, 310, 351, 649
SmaI CCCGGG 2 cut(s) 198, 672
SphI GCATGC 1 cut(s) 755
Sse9I AATT 2 cut(s) 164, 734
SsiI CCGC 8 cut(s) 18, 46, 105, 134, 209, 276, 278, 335
StyD4I CCNGG 9 cut(s) 58, 195, 196, 243, 353, 669, 670, 699, 711
StyI CCWWGG 2 cut(s) 556, 765
TaqI TCGA 6 cut(s) 222, 252, 294, 360, 489, 600
TasI AATT 2 cut(s) 164, 734
TatI WGTACW 1 cut(s) 282
TauI GCSGC 2 cut(s) 20, 108
TfiI GAWTC 4 cut(s) 78, 90, 376, 442
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 2 cut(s) 505, 699
TseFI GTSAC 3 cut(s) 22, 129, 802
TseI GCWGC 2 cut(s) 415, 797
Tsp45I GTSAC 3 cut(s) 22, 129, 802
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 1 cut(s) 246
TspMI CCCGGG 2 cut(s) 196, 670
TspRI CASTG 2 cut(s) 505, 699
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 5 cut(s) 62, 241, 310, 351, 649
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 755
XmaI CCCGGG 2 cut(s) 196, 670
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.