MD01G1132800.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0015003
Physical Location & Seq
Reverse (-)
24270803 .. 24273012
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1132800.v1.1.491

Sequence Viewer

Length: 852 bp
ATGACTGCCGCCACAGCCACCGTTACCTCCCACTTCTTTGGATCCCAACTCCGAACCCCAGAGCCCAGTTTCGGACGCTTCCAAGCCCGCCTTGGCGGCTTCGGAGGCTTCAGCTTCGGCACCAAGAAGTCACCACAACCTGCACCGCCAAAGCAAAAGCAAAAAAAGTTTGATGACGGCGAACGACTGGTATGGTTTCCGGGTGTTGAACCGCCAGAGTGGCTTGACGGATCTCTGCCCGGGGACCGTGGGTTTGACCCCTTTGGGTTGGGGAAGCCCGCCGAGTACTTGCAGTACGATTACGATGGGCTCGACCAGAACCTGGCCAAGAATGTGGCGGGTGACATCATCGGGACAAGGATCGAGACCGTGGAGGTGAATCCGACGCCTTTTCAGCCGTACACGGAGGTTTTTGGGCTGCAGAGGTTCAGGGAGTGCGAGCTGATTCACGGGAGGTGGGCCATGCTAGGAGCGCTTGGTGCTCTTGCCGTTGAGGGACTCACCGGTGTTGCATGGCAAGACGCTGGAAAGGTTGAGTTGATCGAAGGATCGTCCTACCTTGGCCTTCCACTTCCCTTCTCCATCACCACATTGATATGGATCGAGGTGTTGGTGATTGGCTACATTGAGTTCCAGAGGAATGCCGAGCTTGACCCGGAGAAGAGGTTGTACCCGGGTGGCAAGTTTTTCGACCCATTGGGTTTGGCCTCCGACCCCGATGAATTTGAAAGGCTTCAACTGGCTGAGATCAAGCATGCCCGTCTTGCCATGGTCGTCTTCCTCATTTTTGGAATCCAAGCTGCTGTCACAGGAAAGGGACCTATCAGTTTTCTTCTTACCTTTAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

284

Amino Acids

31.2

Weight (kDa)

5.15

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 71 - 267 7.9e-40 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40100
fragaria_vesca FvH4_7g24350
malus_domestica MD01G1132800.v1.1
prunus_persica Prupe.2G248900_v2.0.a1
pyrus_communis pycom01g16940
rosa_chinensis RchiOBHm_Chr1g0370011
rosa_laevigata RLG00000027078
rosa_multiflora Rmu_sc0005056.1_g000015
rosa_roxburghii Rroxscaffold_4G00286870 Rroxscaffold_4G00287160
rosa_rugosa Rorug01G0353400
rosa_samantha Rh1AG362100 Rh1BG325300 Rh1CG338600 Rh1DG355800
rosa_wichuraiana Rw1G031860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 7 cut(s) 9, 88, 96, 146, 212, 279, 338
AclWI GGATC 6 cut(s) 36, 49, 238, 368, 556, 608
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 4 cut(s) 287, 296, 401, 671
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 2 cut(s) 71, 322
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 3 cut(s) 209, 728, 737
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 4 cut(s) 114, 442, 649, 800
AluI AGCT 4 cut(s) 114, 442, 649, 800
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 6 cut(s) 36, 49, 238, 368, 556, 608
AlwNI CAGNNNCTG 1 cut(s) 322
Ama87I CYCGRG 2 cut(s) 239, 673
Aor51HI AGCGCT 1 cut(s) 474
AoxI GGCC 4 cut(s) 324, 459, 562, 705
ApeKI GCWGC 2 cut(s) 418, 800
ApoI RAATTY 1 cut(s) 722
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsiGI ACCGGT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 244, 459, 818
AsuC2I CCSGG 6 cut(s) 201, 240, 241, 656, 674, 675
AsuHPI GGTGA 6 cut(s) 123, 353, 388, 493, 577, 625
AvaI CYCGRG 2 cut(s) 239, 673
AvaII GGWCC 2 cut(s) 244, 818
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 66, 312
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BbsI GAAGAC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 405, 787
BccI CCATC 2 cut(s) 299, 590
BceAI ACGGC 3 cut(s) 193, 382, 473
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BciT130I CCWGG 1 cut(s) 323
BcnI CCSGG 6 cut(s) 201, 240, 241, 656, 674, 675
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 2 cut(s) 96, 220
BisI GCNGC 4 cut(s) 9, 97, 419, 801
BlsI GCNGC 4 cut(s) 10, 98, 420, 802
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 7 cut(s) 201, 240, 241, 323, 656, 674, 675
Bme18I GGWCC 2 cut(s) 244, 818
BmeT110I CYCGRG 2 cut(s) 239, 673
BmgT120I GGNCC 3 cut(s) 244, 459, 818
BmiI GGNNCC 4 cut(s) 43, 121, 245, 819
BmrFI CCNGG 7 cut(s) 201, 240, 241, 323, 656, 674, 675
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 769
BpuMI CCSGG 6 cut(s) 201, 240, 241, 656, 674, 675
BsaBI GATNNNNATC 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 8 cut(s) 91, 239, 240, 247, 369, 559, 673, 768
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 322
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 66, 192, 744
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 8 cut(s) 91, 239, 240, 247, 369, 559, 673, 768
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 71, 322
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 3 cut(s) 66, 192, 744
BseXI GCAGC 2 cut(s) 405, 787
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 4 cut(s) 326, 461, 564, 707
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 2 cut(s) 239, 673
BsiSI CCGG 5 cut(s) 200, 240, 504, 656, 674
BslFI GGGAC 4 cut(s) 257, 367, 510, 831
BslI CCNNNNNNNGG 2 cut(s) 71, 322
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 4 cut(s) 257, 367, 510, 831
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 4 cut(s) 326, 461, 564, 707
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 2 cut(s) 239, 673
Bsp1286I GDGCHC 3 cut(s) 66, 312, 484
Bsp143I GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 7 cut(s) 9, 88, 96, 146, 212, 279, 338
BspANI GGCC 4 cut(s) 326, 461, 564, 707
BspCNI CTCAG 1 cut(s) 736
BspLI GGNNCC 4 cut(s) 43, 121, 245, 819
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 6 cut(s) 36, 49, 238, 368, 556, 608
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 3 cut(s) 66, 192, 744
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 8 cut(s) 91, 239, 240, 247, 369, 559, 673, 768
BssMI GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 3 cut(s) 91, 559, 768
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 3 cut(s) 22, 248, 370
Bst6I CTCTTC 1 cut(s) 656
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 88, 279, 440, 756
BstDEI CTNAG 1 cut(s) 744
BstDSI CCRYGG 3 cut(s) 247, 369, 768
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 7 cut(s) 44, 233, 363, 543, 551, 603, 750
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
BstMWI GCNNNNNNNGC 8 cut(s) 14, 96, 105, 220, 394, 472, 479, 764
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 7 cut(s) 199, 238, 239, 321, 654, 672, 673
BstSFI CTRYAG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 405, 787
BstV2I GAAGAC 1 cut(s) 769
BstX2I RGATCY 2 cut(s) 41, 230
BstXI CCANNNNNNTGG 2 cut(s) 38, 334
BstYI RGATCY 2 cut(s) 41, 230
BsuRI GGCC 4 cut(s) 326, 461, 564, 707
BtgI CCRYGG 3 cut(s) 247, 369, 768
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 88, 279, 440, 756
CaiI CAGNNNCTG 1 cut(s) 322
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 3 cut(s) 244, 459, 818
Cfr9I CCCGGG 2 cut(s) 239, 673
CseI GACGC 3 cut(s) 84, 394, 530
Csp6I GTAC 4 cut(s) 286, 295, 400, 670
CspAI ACCGGT 1 cut(s) 503
CviAII CATG 4 cut(s) 463, 513, 755, 769
CviQI GTAC 4 cut(s) 286, 295, 400, 670
DdeI CTNAG 1 cut(s) 744
DpnI GATC 7 cut(s) 43, 232, 362, 542, 550, 602, 749
DpnII GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
Eco130I CCWWGG 3 cut(s) 91, 559, 768
Eco24I GRGCYC 2 cut(s) 66, 312
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 244, 818
Eco47III AGCGCT 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 239, 673
EcoO109I RGGNCCY 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 3 cut(s) 91, 559, 768
EcoT38I GRGCYC 2 cut(s) 66, 312
ErhI CCWWGG 3 cut(s) 91, 559, 768
FaeI CATG 4 cut(s) 466, 516, 758, 772
FaiI YATR 6 cut(s) 193, 464, 514, 598, 756, 770
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 4 cut(s) 257, 367, 510, 831
FatI CATG 4 cut(s) 462, 512, 754, 768
FauI CCCGC 3 cut(s) 95, 286, 331
Fnu4HI GCNGC 4 cut(s) 9, 97, 419, 801
FriOI GRGCYC 2 cut(s) 66, 312
Fsp4HI GCNGC 4 cut(s) 9, 97, 419, 801
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 474
GluI GCNGC 4 cut(s) 9, 97, 419, 801
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 4 cut(s) 326, 461, 564, 707
HapII CCGG 5 cut(s) 200, 240, 504, 656, 674
HgaI GACGC 3 cut(s) 84, 394, 530
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 4 cut(s) 466, 516, 758, 772
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 4 cut(s) 379, 445, 498, 792
HpaII CCGG 5 cut(s) 200, 240, 504, 656, 674
HphI GGTGA 6 cut(s) 123, 353, 388, 493, 577, 625
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 5 cut(s) 53, 74, 104, 384, 712
Hpy188III TCNNGA 3 cut(s) 352, 364, 634
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 3 cut(s) 539, 575, 586
HpyCH4III ACNGT 3 cut(s) 22, 248, 370
HpyCH4V TGCA 4 cut(s) 143, 292, 421, 512
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 96, 105, 220, 394, 472, 479, 764
HpyF3I CTNAG 1 cut(s) 744
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 4 cut(s) 466, 516, 758, 772
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 2 cut(s) 405, 787
MaeI CTAG 1 cut(s) 467
MaeIII GTNAC 4 cut(s) 22, 129, 341, 805
MalI GATC 7 cut(s) 43, 232, 362, 542, 550, 602, 749
MboI GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
MboII GAAGA 3 cut(s) 673, 769, 824
MflI RGATCY 2 cut(s) 41, 230
MhlI GDGCHC 3 cut(s) 66, 312, 484
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 1 cut(s) 722
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 2 cut(s) 407, 735
Mox20I TGGCCA 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 732
MscI TGGCCA 1 cut(s) 326
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 1 cut(s) 595
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 5 cut(s) 200, 240, 504, 656, 674
MspR9I CCNGG 7 cut(s) 201, 240, 241, 323, 656, 674, 675
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 8 cut(s) 14, 96, 105, 220, 394, 472, 479, 764
NciI CCSGG 6 cut(s) 201, 240, 241, 656, 674, 675
NcoI CCATGG 1 cut(s) 768
NdeII GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
NlaIII CATG 4 cut(s) 466, 516, 758, 772
NlaIV GGNNCC 4 cut(s) 43, 121, 245, 819
NmeAIII GCCGAG 2 cut(s) 307, 670
NmuCI GTSAC 3 cut(s) 129, 341, 805
NspI RCATGY 1 cut(s) 758
PaeI GCATGC 1 cut(s) 758
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 3 cut(s) 379, 445, 792
PflMI CCANNNNNTGG 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 4 cut(s) 10, 98, 420, 802
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
PpuMI RGGWCCY 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 4 cut(s) 43, 121, 245, 819
PspPI GGNCC 3 cut(s) 244, 459, 818
PspPPI RGGWCCY 1 cut(s) 818
PstI CTGCAG 1 cut(s) 423
PstNI CAGNNNCTG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 41, 230
RsaI GTAC 4 cut(s) 287, 296, 401, 671
RsaNI GTAC 4 cut(s) 286, 295, 400, 670
RseI CAYNNNNRTG 1 cut(s) 595
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 4 cut(s) 9, 97, 419, 801
Sau3AI GATC 7 cut(s) 41, 230, 360, 540, 548, 600, 747
Sau96I GGNCC 3 cut(s) 244, 459, 818
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 492
ScrFI CCNGG 7 cut(s) 201, 240, 241, 323, 656, 674, 675
SduI GDGCHC 3 cut(s) 66, 312, 484
SfcI CTRYAG 1 cut(s) 419
SgrAI CRCCGGYG 1 cut(s) 503
SinI GGWCC 2 cut(s) 244, 818
SmaI CCCGGG 2 cut(s) 241, 675
SmiMI CAYNNNNRTG 1 cut(s) 595
SphI GCATGC 1 cut(s) 758
Sse9I AATT 1 cut(s) 722
SsiI CCGC 7 cut(s) 9, 88, 96, 146, 212, 279, 338
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 7 cut(s) 199, 238, 239, 321, 654, 672, 673
StyI CCWWGG 3 cut(s) 91, 559, 768
TaaI ACNGT 3 cut(s) 22, 248, 370
TaqI TCGA 5 cut(s) 312, 363, 543, 603, 690
TasI AATT 1 cut(s) 722
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 11, 99
TfiI GAWTC 3 cut(s) 379, 445, 792
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TseFI GTSAC 3 cut(s) 129, 341, 805
TseI GCWGC 2 cut(s) 418, 800
Tsp45I GTSAC 3 cut(s) 129, 341, 805
TspDTI ATGAA 1 cut(s) 735
TspGWI ACGGA 2 cut(s) 243, 419
TspMI CCCGGG 2 cut(s) 239, 673
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 244, 818
XapI RAATTY 1 cut(s) 722
XceI RCATGY 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmaI CCCGGG 2 cut(s) 239, 673
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 1 cut(s) 467
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.