FvH4_7g25460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0019730
Physical Location & Seq
Reverse (-)
19424235 .. 19424775
541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25460.t1

Sequence Viewer

Length: 429 bp
ATGGGTCAGACAGCCATTGAAGATGCTTCATCTTCTGTGGTTCATCTGTGTTTGTGCTTCATTTACCTCCATGCTTGTTCTCCTAACCGGATTCTTGAAACACAAACTAGTAACCAAGTCCGAGCACGATTTATGGTTCGAAGTAAATATCCAAATCATCAATTTACTCTTCACCATTCTGTGTTTGTACCACCATCCAAGGTGGTGCCACCACCTTTTTCTTCTATGCAGATGGAGACCAGAAGATGTTTCGAAGCTTCGAAGTGGTGTTACAGCATTTCAGAACGACCTTGGGAGGCAATCGGAAAATGTGTGTTGATTATTGTTTGTTCAGCTACAATTGCTGTTGTGTACAAAACTTGCAGCCCCTTGCAGAAGAGGGATCCTAACTCCGGCGTGGATGTGGAAGCGCCGGCTGTGAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

8.85

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25460
rosa_chinensis RchiOBHm_Chr1g0371421
rosa_laevigata RLG00000026964
rosa_samantha Rh1AG374000 Rh1BG337400 Rh1CG350700 Rh1DG368400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AclWI GGATC 2 cut(s) 377, 390
AfaI GTAC 2 cut(s) 189, 353
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 2 cut(s) 20, 98
AhlI ACTAGT 1 cut(s) 107
AluBI AGCT 2 cut(s) 257, 335
AluI AGCT 2 cut(s) 257, 335
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 377, 390
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 3 cut(s) 139, 252, 260
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 202, 226
BcoDI GTCTC 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 413
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 207, 384
BmsI GCATC 1 cut(s) 13
Bpu14I TTCGAA 3 cut(s) 139, 252, 260
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 198, 290
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 198, 290
BseGI GGATG 2 cut(s) 194, 406
BseLI CCNNNNNNNGG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 3 cut(s) 88, 393, 413
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 230
Bsp119I TTCGAA 3 cut(s) 139, 252, 260
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 1 cut(s) 382
BspANI GGCC 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 207, 384
BspPI GGATC 2 cut(s) 377, 390
BspT104I TTCGAA 3 cut(s) 139, 252, 260
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 198, 290
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 198, 290
Bst6I CTCTTC 2 cut(s) 174, 371
BstAUI TGTACA 1 cut(s) 351
BstBI TTCGAA 3 cut(s) 139, 252, 260
BstC8I GCNNGC 1 cut(s) 414
BstF5I GGATG 2 cut(s) 194, 406
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 341, 422
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 2 cut(s) 194, 406
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 412
Csp6I GTAC 2 cut(s) 188, 352
CviAII CATG 1 cut(s) 71
CviJI RGCY 6 cut(s) 14, 257, 335, 366, 416, 425
CviKI_1 RGCY 6 cut(s) 14, 257, 335, 366, 416, 425
CviQI GTAC 2 cut(s) 188, 352
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 174, 371
EarI CTCTTC 2 cut(s) 174, 371
Eco130I CCWWGG 2 cut(s) 198, 290
Eco147I AGGCCT 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 198, 290
ErhI CCWWGG 2 cut(s) 198, 290
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 134, 227
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 2 cut(s) 181, 413
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 364
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 1 cut(s) 425
HapII CCGG 3 cut(s) 88, 393, 413
HhaI GCGC 1 cut(s) 412
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 91
HpaII CCGG 3 cut(s) 88, 393, 413
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 9, 122, 283, 305
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 229, 363, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 422
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 1 cut(s) 410
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Kzo9I GATC 1 cut(s) 382
LpnPI CCDG 3 cut(s) 101, 253, 406
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 110, 269
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 6 cut(s) 24, 32, 161, 213, 255, 388
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 161, 339
MnlI CCTC 3 cut(s) 77, 289, 372
MroNI GCCGGC 1 cut(s) 412
MspI CCGG 3 cut(s) 88, 393, 413
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 341, 422
NaeI GCCGGC 1 cut(s) 414
NdeII GATC 1 cut(s) 382
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 207, 384
NspV TTCGAA 3 cut(s) 139, 252, 260
PceI AGGCCT 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 207, 384
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 189, 353
RsaNI GTAC 2 cut(s) 188, 352
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 69, 204, 217, 259, 292, 337
SfaNI GCATC 1 cut(s) 13
SfuI TTCGAA 3 cut(s) 139, 252, 260
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 2 cut(s) 161, 339
SseBI AGGCCT 1 cut(s) 425
SspMI CTAG 1 cut(s) 108
StuI AGGCCT 1 cut(s) 425
StyI CCWWGG 2 cut(s) 198, 290
TaqI TCGA 3 cut(s) 139, 252, 260
TasI AATT 2 cut(s) 161, 339
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 91
TseI GCWGC 1 cut(s) 363
TspDTI ATGAA 3 cut(s) 18, 32, 49
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.