Rh1DG368400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
59376844 .. 59377143
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG368400.1

Sequence Viewer

Length: 300 bp
ATGGAGCAGAAAGCCATTGAAGATGCTTCATTTTCTGTGGTTCATCTGTGTTTGTATTTCATTTATATGCATGCTTGTTCTCCTGAGCGGATTGTTGAAACACGGACTAGTAACAAAGTCCCAGCACGATTTATGGTTCGAAGTAAATGTCCAAATTATCAATTTACTTTTCACCATTTTGTGTTTGTACCAGCATCCAAGGTGGTGCCAGCACCTTTTTCTGCTGTGCAGATGGAGACCAGAAGATGCTTCAAAGCTTCGAAGGTTTTACTGCAAAATTGGGAAAGAGAAGCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.52

Weight (kDa)

9.27

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25460
rosa_chinensis RchiOBHm_Chr1g0371421
rosa_laevigata RLG00000026964
rosa_samantha Rh1AG374000 Rh1BG337400 Rh1CG350700 Rh1DG368400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 2 cut(s) 88, 294
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 3 cut(s) 20, 98, 253
AhlI ACTAGT 1 cut(s) 107
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 2 cut(s) 139, 260
BanI GGYRCC 1 cut(s) 205
BccI CCATC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 3 cut(s) 13, 203, 236
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 2 cut(s) 139, 260
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 230
Bsp119I TTCGAA 2 cut(s) 139, 260
BspACI CCGC 2 cut(s) 88, 294
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 207
BspT104I TTCGAA 2 cut(s) 139, 260
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 198
BstBI TTCGAA 2 cut(s) 139, 260
BstC8I GCNNGC 2 cut(s) 72, 210
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 72, 210
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 71, 297
CviJI RGCY 3 cut(s) 14, 257, 293
CviKI_1 RGCY 3 cut(s) 14, 257, 293
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 74, 300
FaiI YATR 5 cut(s) 66, 68, 72, 134, 298
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 70, 296
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 74, 300
HindIII AAGCTT 1 cut(s) 255
HphI GGTGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 70, 229, 274
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 74, 300
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 96, 135, 204, 222, 253
LweI GCATC 3 cut(s) 13, 203, 236
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 110
MbiI CCGCTC 1 cut(s) 88
MboII GAAGA 2 cut(s) 32, 255
MluCI AATT 3 cut(s) 154, 161, 277
Mph1103I ATGCAT 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 65
NlaIII CATG 2 cut(s) 74, 300
NlaIV GGNNCC 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 2 cut(s) 139, 260
PaeI GCATGC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 207
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 1 cut(s) 294
SetI ASST 4 cut(s) 204, 217, 259, 267
SfaNI GCATC 3 cut(s) 13, 203, 236
SfuI TTCGAA 2 cut(s) 139, 260
SmiMI CAYNNNNRTG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 107
SphI GCATGC 1 cut(s) 74
Sse9I AATT 3 cut(s) 154, 161, 277
SsiI CCGC 2 cut(s) 88, 294
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 139, 260
TasI AATT 3 cut(s) 154, 161, 277
TauI GCSGC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 18, 32, 49
TspGWI ACGGA 1 cut(s) 118
XceI RCATGY 1 cut(s) 74
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.